Rh5CG346800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000268
Physical Location & Seq
Forward (+)
39962760 .. 39980421
17662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG346800.1

Sequence Viewer

Length: 288 bp
ATGGTGTCTAATTTGATTCCTACATTTTCCCTCAAGTACAGAGAGTCACAAACACCTCTACAAGATTTAGTTCAATGGAAACTTGATCTTGGAATTGTGGAATTGCTTGGTACTTTCCCTCTTGCAAAGCTTAGCTGGGATCGTGGCAGTCTCGATGATTTGGATGCAAGGAAACCTGACCCACCACCTGGTACAAGTGCAATAAAAGGCAAAAGAAGAGCAACTAATTATGGCGTACTCTCATTTGCAGCTCTCCATTTCAGGAGGGTGGTGAAGTTTATAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.71

Weight (kDa)

9.69

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 188
AclWI GGATC 1 cut(s) 147
AfaI GTAC 4 cut(s) 38, 112, 193, 237
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 130, 135, 251
AluI AGCT 3 cut(s) 130, 135, 251
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 283
BbvI GCAGC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 155
BisI GCNGC 1 cut(s) 249
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 154
Bpu1102I GCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 85, 139
Bsp1720I GCTNAGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 147
BspQI GCTCTTC 1 cut(s) 211
BssMI GATC 2 cut(s) 85, 139
Bst2UI CCWGG 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 2 cut(s) 88, 142
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 85, 139
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 169
CsiI ACCWGGT 1 cut(s) 187
Csp6I GTAC 4 cut(s) 37, 111, 192, 236
CviJI RGCY 3 cut(s) 130, 135, 251
CviKI_1 RGCY 3 cut(s) 130, 135, 251
CviQI GTAC 4 cut(s) 37, 111, 192, 236
DdeI CTNAG 1 cut(s) 131
DpnI GATC 2 cut(s) 87, 141
DpnII GATC 2 cut(s) 85, 139
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 187
FaiI YATR 2 cut(s) 231, 281
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 249
GsaI CCCAGC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 16, 44
HphI GGTGA 1 cut(s) 283
Hpy188III TCNNGA 2 cut(s) 152, 262
HpyCH4V TGCA 4 cut(s) 125, 167, 200, 248
HpyF3I CTNAG 1 cut(s) 131
Kzo9I GATC 2 cut(s) 85, 139
LguI GCTCTTC 1 cut(s) 211
LpnPI CCDG 5 cut(s) 121, 174, 189, 201, 247
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 1 cut(s) 154
MabI ACCWGGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 45
MalI GATC 2 cut(s) 87, 141
MboI GATC 2 cut(s) 85, 139
MboII GAAGA 1 cut(s) 228
MluCI AATT 4 cut(s) 10, 93, 101, 226
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 4 cut(s) 41, 66, 129, 258
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
NdeII GATC 2 cut(s) 85, 139
NmuCI GTSAC 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 1 cut(s) 187
RsaI GTAC 4 cut(s) 38, 112, 193, 237
RsaNI GTAC 4 cut(s) 37, 111, 192, 236
SapI GCTCTTC 1 cut(s) 211
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 85, 139
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 189
SetI ASST 6 cut(s) 58, 132, 137, 178, 190, 253
SexAI ACCWGGT 1 cut(s) 187
SfaNI GCATC 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 4 cut(s) 10, 93, 101, 226
StyD4I CCNGG 1 cut(s) 187
TaqI TCGA 1 cut(s) 153
TasI AATT 4 cut(s) 10, 93, 101, 226
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 1 cut(s) 16
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.