Rorug06G0005600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000268
Physical Location & Seq
Forward (+)
730007 .. 735402
5396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0005600.1

Sequence Viewer

Length: 978 bp
ATGGCCTGCGACGAACCTGTGAAAGCTATAGCAGCTGCGACCTGTCAGAATCAAGAGAAGAAGAAGAATCTTCGGCTGCAGGTTCAGCGAGCACTGCTTTCTGTTTTCCAAATTGTTCGGCGGCCGGGGAAGCACTGGTTGTGCGGCGGCCAGGGCGCGGCGCACTCCCCTAGTACAAAGAACCTGGGCCGAGTGAGGAGCTCGCGCCGGTCGGACCACTTGAAGAGGCCGGGGCCTGGTAGTGTCTTCAGAGAAGCGAGCGAGCATTTCAATATCGGCAGGATAAGGATTCCTCAGCTCGCAAAAGAGAGTTGCGAAGAGTTCGTCGTCTGGTTGGGTCCAGCAATTGACAGAAACTTCTTTCCACCAAATCTCATATCCCTCTTCAGTTCCGTCTACAGCGTCGAGGGTTGTGGAGCCCATAGTTCCAGTTATTTTTCAACACACAAAGGCAACCACTTCCATATAGAGAAACAGGCAGTGGGATCCATTATTGTCGGACAGTCGGACTATAGATTTGCTGTAGACCCCAATGGTGGTATTCCTAATAATCATCAACCGAATGGCCCTTCTGAAGTATGCGAACCAACAGAGAGTCCTCTACGTTATGGATTTTGTGATGATTGTATCAACCACCACCTTTCAAGTGGCCATGCTGGTCATAGTAATGGGGTTTCAGTTCCAGCTGGAAACCTGGGAATTCCTCGCGCTGATGTTAATGCCATTCCCAGTGATTTCATAATTCCTCCTGCCGGTTTTGATGGTGTACAGAATGACATAAGAATGCCAACGGCCACCTATACAAATGAGCAGGAGAAGGGTCAGCAAATAGCATTGAACAGACTTTCAAAACCTTCAAACCAAGGCCTTGAAGAGTTTCAAAACGAGGATAGGATGCGTATGAAGACCAATGTTGTGATAAGGGTTCTCTCATGCAATGTAATTCGGAATCAAGGTCTTATCACTGACAACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

325

Amino Acids

35.69

Weight (kDa)

8.73

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccI GTMKAC 2 cut(s) 396, 525
AccII CGCG 3 cut(s) 158, 205, 708
AciI CCGC 4 cut(s) 121, 144, 147, 158
AclWI GGATC 2 cut(s) 480, 493
AcoI YGGCCR 4 cut(s) 122, 148, 649, 792
AcsI RAATTY 1 cut(s) 699
AcuI CTGAAG 3 cut(s) 232, 370, 594
AfaI GTAC 2 cut(s) 175, 768
AfiI CCNNNNNNNGG 4 cut(s) 157, 236, 536, 752
AgsI TTSAA 9 cut(s) 223, 271, 441, 645, 838, 849, 858, 872, 881
AjnI CCWGG 4 cut(s) 150, 183, 235, 693
AluBI AGCT 5 cut(s) 26, 35, 201, 298, 686
AluI AGCT 5 cut(s) 26, 35, 201, 298, 686
Alw21I GWGCWC 2 cut(s) 94, 203
AlwI GGATC 2 cut(s) 480, 493
ApeKI GCWGC 3 cut(s) 32, 35, 76
ApoI RAATTY 1 cut(s) 699
ArsI GACNNNNNNTTYG 4 cut(s) 309, 341, 500, 532
Asp700I GAANNNNTTC 1 cut(s) 876
AspLEI GCGC 4 cut(s) 158, 163, 207, 710
AspS9I GGNCC 5 cut(s) 187, 214, 233, 338, 566
AsuC2I CCSGG 2 cut(s) 126, 231
AvaII GGWCC 2 cut(s) 214, 338
BalI TGGCCA 1 cut(s) 651
BamHI GGATCC 1 cut(s) 485
BanII GRGCYC 2 cut(s) 203, 421
BbsI GAAGAC 2 cut(s) 238, 911
Bbv12I GWGCWC 2 cut(s) 94, 203
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 22, 44, 63
BccI CCATC 1 cut(s) 755
BceAI ACGGC 1 cut(s) 807
BciT130I CCWGG 4 cut(s) 152, 185, 237, 695
BcnI CCSGG 2 cut(s) 126, 231
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 5 cut(s) 27, 77, 397, 511, 522
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 7 cut(s) 33, 36, 77, 122, 145, 148, 159
BlsI GCNGC 7 cut(s) 34, 37, 78, 123, 146, 149, 160
Bme1390I CCNGG 6 cut(s) 126, 152, 185, 231, 237, 695
Bme18I GGWCC 2 cut(s) 214, 338
BmgT120I GGNCC 5 cut(s) 187, 214, 233, 338, 566
BmiI GGNNCC 4 cut(s) 234, 339, 418, 487
BmrFI CCNGG 6 cut(s) 126, 152, 185, 231, 237, 695
BmrI ACTGGG 1 cut(s) 723
BmsI GCATC 1 cut(s) 885
BmuI ACTGGG 1 cut(s) 723
BpiI GAAGAC 2 cut(s) 238, 911
Bpu10I CCTNAGC 1 cut(s) 294
BpuMI CCSGG 2 cut(s) 126, 231
BsaJI CCNNGG 6 cut(s) 125, 151, 184, 230, 694, 862
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 236, 536, 752
Bse118I RCCGGY 2 cut(s) 207, 752
Bse1I ACTGG 3 cut(s) 140, 429, 729
Bse3DI GCAATG 1 cut(s) 943
BseBI CCWGG 4 cut(s) 152, 185, 237, 695
BseDI CCNNGG 6 cut(s) 125, 151, 184, 230, 694, 862
BseGI GGATG 1 cut(s) 900
BseLI CCNNNNNNNGG 4 cut(s) 157, 236, 536, 752
BseMI GCAATG 1 cut(s) 943
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 3 cut(s) 140, 429, 729
BseRI GAGGAG 1 cut(s) 211
BseX3I CGGCCG 1 cut(s) 122
BseXI GCAGC 3 cut(s) 22, 44, 63
Bsh1236I CGCG 3 cut(s) 158, 205, 708
Bsh1285I CGRYCG 2 cut(s) 125, 212
BsiEI CGRYCG 2 cut(s) 125, 212
BsiHKAI GWGCWC 2 cut(s) 94, 203
BsiSI CCGG 4 cut(s) 125, 208, 230, 753
BslI CCNNNNNNNGG 4 cut(s) 157, 236, 536, 752
BsmI GAATGC 1 cut(s) 789
Bsp1286I GDGCHC 3 cut(s) 94, 203, 421
Bsp1407I TGTACA 1 cut(s) 766
Bsp143I GATC 1 cut(s) 485
BspACI CCGC 4 cut(s) 121, 144, 147, 158
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 3 cut(s) 158, 205, 708
BspLI GGNNCC 4 cut(s) 234, 339, 418, 487
BspMAI CTGCAG 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 2 cut(s) 480, 493
BsrDI GCAATG 1 cut(s) 943
BsrFI RCCGGY 2 cut(s) 207, 752
BsrGI TGTACA 1 cut(s) 766
BsrI ACTGG 3 cut(s) 140, 429, 729
BssAI RCCGGY 2 cut(s) 207, 752
BssECI CCNNGG 6 cut(s) 125, 151, 184, 230, 694, 862
BssMI GATC 1 cut(s) 485
BssT1I CCWWGG 1 cut(s) 862
Bst2UI CCWGG 4 cut(s) 152, 185, 237, 695
Bst4CI ACNGT 1 cut(s) 504
Bst6I CTCTTC 4 cut(s) 218, 312, 389, 867
BstAUI TGTACA 1 cut(s) 766
BstC8I GCNNGC 6 cut(s) 7, 90, 203, 259, 263, 300
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 900
BstFNI CGCG 3 cut(s) 158, 205, 708
BstHHI GCGC 4 cut(s) 158, 163, 207, 710
BstKTI GATC 1 cut(s) 488
BstMBI GATC 1 cut(s) 485
BstMCI CGRYCG 2 cut(s) 125, 212
BstMWI GCNNNNNNNGC 5 cut(s) 32, 85, 94, 130, 153
BstNI CCWGG 4 cut(s) 152, 185, 237, 695
BstSCI CCNGG 6 cut(s) 124, 150, 183, 229, 235, 693
BstSFI CTRYAG 5 cut(s) 27, 77, 397, 511, 522
BstUI CGCG 3 cut(s) 158, 205, 708
BstV1I GCAGC 3 cut(s) 22, 44, 63
BstV2I GAAGAC 2 cut(s) 238, 911
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BstZI CGGCCG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 900
BtsI GCAGTG 2 cut(s) 92, 486
BtsIMutI CAGTG 5 cut(s) 92, 133, 486, 736, 963
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 6 cut(s) 7, 90, 203, 259, 263, 300
CfoI GCGC 4 cut(s) 158, 163, 207, 710
Cfr10I RCCGGY 2 cut(s) 207, 752
Cfr13I GGNCC 5 cut(s) 187, 214, 233, 338, 566
CseI GACGC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 174, 767
CviAII CATG 2 cut(s) 653, 933
CviQI GTAC 2 cut(s) 174, 767
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 487
DpnII GATC 1 cut(s) 485
EaeI YGGCCR 4 cut(s) 122, 148, 649, 792
EagI CGGCCG 1 cut(s) 122
Eam1104I CTCTTC 4 cut(s) 218, 312, 389, 867
EarI CTCTTC 4 cut(s) 218, 312, 389, 867
Ecl136II GAGCTC 1 cut(s) 201
EclXI CGGCCG 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 862
Eco147I AGGCCT 1 cut(s) 867
Eco24I GRGCYC 2 cut(s) 203, 421
Eco47I GGWCC 2 cut(s) 214, 338
Eco52I CGGCCG 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 3 cut(s) 232, 370, 594
EcoICRI GAGCTC 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 699
EcoRII CCWGG 4 cut(s) 150, 183, 235, 693
EcoT14I CCWWGG 1 cut(s) 862
EcoT38I GRGCYC 2 cut(s) 203, 421
ErhI CCWWGG 1 cut(s) 862
FaeI CATG 2 cut(s) 656, 936
FatI CATG 2 cut(s) 652, 932
FblI GTMKAC 2 cut(s) 396, 525
Fnu4HI GCNGC 7 cut(s) 33, 36, 77, 122, 145, 148, 159
FokI GGATG 1 cut(s) 907
FriOI GRGCYC 2 cut(s) 203, 421
Fsp4HI GCNGC 7 cut(s) 33, 36, 77, 122, 145, 148, 159
FspBI CTAG 1 cut(s) 171
GlaI GCGC 4 cut(s) 157, 162, 206, 709
GluI GCNGC 7 cut(s) 33, 36, 77, 122, 145, 148, 159
HapII CCGG 4 cut(s) 125, 208, 230, 753
HgaI GACGC 1 cut(s) 391
HhaI GCGC 4 cut(s) 158, 163, 207, 710
Hin1II CATG 2 cut(s) 656, 936
Hin6I GCGC 4 cut(s) 156, 161, 205, 708
HinP1I GCGC 4 cut(s) 156, 161, 205, 708
HinfI GANTC 5 cut(s) 49, 67, 289, 595, 949
HpaII CCGG 4 cut(s) 125, 208, 230, 753
Hpy166II GTNNAC 3 cut(s) 397, 526, 767
Hpy188I TCNGA 7 cut(s) 48, 214, 251, 500, 508, 574, 948
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 3 cut(s) 397, 526, 767
Hpy99I CGWCG 3 cut(s) 14, 329, 407
HpyAV CCTTC 3 cut(s) 579, 811, 864
HpyCH4III ACNGT 1 cut(s) 504
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 2 cut(s) 79, 936
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 85, 94, 130, 153
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 2 cut(s) 656, 936
HspAI GCGC 4 cut(s) 156, 161, 205, 708
Kzo9I GATC 1 cut(s) 485
LmnI GCTCC 2 cut(s) 198, 416
Lsp1109I GCAGC 3 cut(s) 22, 44, 63
LweI GCATC 1 cut(s) 885
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 604
MalI GATC 1 cut(s) 487
MboI GATC 1 cut(s) 485
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 3 cut(s) 94, 203, 421
MlsI TGGCCA 1 cut(s) 651
MluCI AATT 5 cut(s) 111, 345, 699, 741, 942
MluNI TGGCCA 1 cut(s) 651
MlyI GAGTC 1 cut(s) 604
MmeI TCCRAC 3 cut(s) 192, 478, 486
MnlI CCTC 9 cut(s) 189, 219, 303, 392, 400, 609, 714, 756, 880
Mox20I TGGCCA 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 876
MscI TGGCCA 1 cut(s) 651
MseI TTAA 1 cut(s) 717
MslI CAYNNNNRTG 2 cut(s) 666, 782
Msp20I TGGCCA 1 cut(s) 651
MspA1I CMGCKG 2 cut(s) 35, 686
MspI CCGG 4 cut(s) 125, 208, 230, 753
MspR9I CCNGG 6 cut(s) 126, 152, 185, 231, 237, 695
MteI GCGCNGCGC 1 cut(s) 159
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 789
MvaI CCWGG 4 cut(s) 152, 185, 237, 695
MvnI CGCG 3 cut(s) 158, 205, 708
MwoI GCNNNNNNNGC 5 cut(s) 32, 85, 94, 130, 153
NciI CCSGG 2 cut(s) 126, 231
NdeII GATC 1 cut(s) 485
NlaIII CATG 2 cut(s) 656, 936
NlaIV GGNNCC 4 cut(s) 234, 339, 418, 487
NmeAIII GCCGAG 1 cut(s) 215
PceI AGGCCT 1 cut(s) 867
PctI GAATGC 1 cut(s) 789
PdmI GAANNNNTTC 1 cut(s) 876
PfeI GAWTC 4 cut(s) 49, 67, 289, 949
PkrI GCNGC 7 cut(s) 34, 37, 78, 123, 146, 149, 160
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
Psp124BI GAGCTC 1 cut(s) 203
Psp6I CCWGG 4 cut(s) 150, 183, 235, 693
PspGI CCWGG 4 cut(s) 150, 183, 235, 693
PspN4I GGNNCC 4 cut(s) 234, 339, 418, 487
PspPI GGNCC 5 cut(s) 187, 214, 233, 338, 566
PstI CTGCAG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 485
PvuII CAGCTG 2 cut(s) 35, 686
RsaI GTAC 2 cut(s) 175, 768
RsaNI GTAC 2 cut(s) 174, 767
RseI CAYNNNNRTG 2 cut(s) 666, 782
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 717
SatI GCNGC 7 cut(s) 33, 36, 77, 122, 145, 148, 159
Sau3AI GATC 1 cut(s) 485
Sau96I GGNCC 5 cut(s) 187, 214, 233, 338, 566
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 6 cut(s) 126, 152, 185, 231, 237, 695
SduI GDGCHC 3 cut(s) 94, 203, 421
SfaNI GCATC 1 cut(s) 885
SfcI CTRYAG 5 cut(s) 27, 77, 397, 511, 522
SinI GGWCC 2 cut(s) 214, 338
SmiMI CAYNNNNRTG 2 cut(s) 666, 782
Sse9I AATT 5 cut(s) 111, 345, 699, 741, 942
SseBI AGGCCT 1 cut(s) 867
SsiI CCGC 4 cut(s) 121, 144, 147, 158
SspMI CTAG 1 cut(s) 171
SstI GAGCTC 1 cut(s) 203
StuI AGGCCT 1 cut(s) 867
StyD4I CCNGG 6 cut(s) 124, 150, 183, 229, 235, 693
StyI CCWWGG 1 cut(s) 862
TaaI ACNGT 1 cut(s) 504
TaiI ACGT 1 cut(s) 607
TaqI TCGA 1 cut(s) 405
TasI AATT 5 cut(s) 111, 345, 699, 741, 942
TatI WGTACW 2 cut(s) 173, 766
TauI GCSGC 4 cut(s) 124, 147, 150, 161
TfiI GAWTC 4 cut(s) 49, 67, 289, 949
Tru1I TTAA 1 cut(s) 717
Tru9I TTAA 1 cut(s) 717
TscAI CASTG 5 cut(s) 99, 140, 486, 736, 970
TseI GCWGC 3 cut(s) 32, 35, 76
TspDTI ATGAA 2 cut(s) 727, 917
TspGWI ACGGA 1 cut(s) 382
TspRI CASTG 5 cut(s) 99, 140, 486, 736, 970
VpaK11BI GGWCC 2 cut(s) 214, 338
XapI RAATTY 1 cut(s) 699
XcmI CCANNNNNNNNNTGG 1 cut(s) 644
XmiI GTMKAC 2 cut(s) 396, 525
XmnI GAANNNNTTC 1 cut(s) 876
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.