Prupe.5G238300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000268
Physical Location & Seq
Reverse (-)
18009446 .. 18012998
3553 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G238300.1

Sequence Viewer

Length: 2520 bp
ATGGAAGCTAAAAAAAGGGGATCAGCAAAAGGAAAACGCAAGGGCGACAGTAATGTGCAACAATCAAGAGTTGGGCGAGATGCATTTTTTAATTTCATGAAAAAACAACGACATGAAATGGGGAAAGAGGCAAATGCAAAGTTGGACAGAAAGGTACAAGAAGAGATTGCTAATAAATGGAGGAATTTGAACCCTCAAGAGAAGGCAACATATGGCTCTGCCTTGGATTTATCGGGTGGGCAAGTAGAAGGATCAAGTGGGCAAGTAAACGTGTCAGTGAATGAGAAGGGTTTTACCAGTAGATGCAGCCCGGATCGATTCCATCAGACGGTGGAAAAATTGTCGAATCAGAAGCGCTTAGCAATTAATGAAATTGGGTTTGGTAAAGTGGCATCTTTGTGTTGCACTCGTTTACGCCGCGAACTATGCCAATTTCTAATTGAAAGGTTCAATCCTGATACGTCTTCTATACAACTGCACGGCAATGTGATTGGAATAAGTGCCGTTGAGTTTGGGCGTGTTATGGGTCTTAAGAACACCGGCGAGGTTGTTGAACTTGAGTGGCTGGTAGAAGATGAAAAGGTGAAAGAGTTAGTGAATAGTTTCGGTGGAAATGGCAAGAGAGTATTAGTAAGGGATTTAGCTGAACAATTGGAAAAGTGCGAAAATGCCGATGAGGACTTTAAAGTTCGATTTGTGATGTTCGCACTTGGCACTGTACTTTGCCCGACCTCCTCACCATCAGTGACGGGGAACTATTTAACTTTCTTGACGATCCCAGGGAAGATAGAGACTAAGAACTGGGCCGACCATGGATTCAACTTCTTATGTGAAGGTATTAGGTCGTTCAAAGCAAAGAAAGTTTCGTATGTAAATGGGTCACTACTATTTCTCCAACTACTGTATTTCGATTCAATTCTCCATGGTGGAGTATATGTTGATAAGTCTTTGGATCCCATTGTGTCATGGGACAATAAGTCGGTGTGGAAAATGATTAAATGGGTCAGAAAGCAAGGTGGGTTTGATAGTCCAACCGTTCGGGTAGTTTCAAAGCACAGTCCAACGAATGAAGTGTCGAGAGTAAACCTTGAAAGAATTGTTCAAGAAGTTGCAGTCAGTTTGGCGCCAATAATACAGGCCGAGGTGAAGCGATCAGTTGAAGGACTTGCTATAACTTTGGGGCCGATAATACAGGCGGAGGTCCAGCGGTCAATGTTGGAACTCACTGACAAGGTAATGAGTCAAGTGAGCTCCTTCAATAAAGACGCAAGACAACATCTTCATCCGGGACATGAAGATGTAAATCAAACTAAGGACAGTCCACTGAAAGAACGAGATCAAGGTGGTGAGAGTGTTGTGAAGAAGAAGGGTGAAGAAGCTAGCAAATTAAAGGAGAAAGGTGTAGTTGATGTAAACAATACTTGGATGCTATTACCGGATGGACAGAGTTTCAGTGAACCCGAGTTGAAAATTGGCGTGGAAAAGAGGAAGTTCACAAAACCGGCCCGTGGTGATGAAACTCGAATTAAAACACGTCGAACGGCCGAAAGGCGTCCAGGAGTTCTTTGTAGAGAGCCATGGGTTGACCCGTCAACCGCAAAAGGAAAGGTTGTGCATTCAACGACGTCTAAGATGAAAATTGGGCCTTTCAAATTAAAACCCGGGGACTTAGAAGACTCCGATTTAGAGTTATTTAGTTATATTTTTAGGTCTAACAACCTTTCAAGTGGCGAAATTATAATTCAAATTGAAAACAAACATCATGTCACGAGAGGTGAGTTCATGTGCTTAAGGCCCGAAGAGTGGATTAATGATGGAGTACTCAACGCACACGTGTATTATCTAGAAGAAAAGGGGTCAAGGAATTGGTACTTCCCCACATATATGGCGGAGCAAGTTCATAATACAAGTGATGGTCAACTTTTCGAATTGGCTGTCAAACTGAGAAGGGAAAACACAAATCGGTTCACCGTAAGGCTTAAGAAGTGCGAGAAGATGTTCATTCCCGTTTTTGATCGAATCGGGAGTCATTGGTATTTGATTGTGGTGCTTCCTAGCGATAAAAAAGTTGAAATATGGGATAGCCTCCCCGGTCCTAAGTACAACGCAGGTCGTTATCAACAAGCAGAACGAATTATGAAAGTGTTGGACCACATTTACAATGAGGAGATTGTCAACTATTTTGAAAAGGGATGGCAGTTTGCAAAATTCAACATTGTGCTAACTGACAAGGCCCGTAGACAAGTAAATGGATGCGATTGTGGTGTGTTCGTTATGAATTGGCTACAAGACATTGAATGCAGATCACACGGTTCAAATAAATTTCAACATGCAAGTGAGCGCGTTCGCATTGCACTATCGTTGCTGAAGAACCCAAGAAACCGGCGTCTAAAGGAAGTAAGGGAGTCCGCTCGAAGAGTTGTCGACGAACAACTTGACAAGTTGGTCGAACAGAAGGATCCCTTCATCCCTCATCATCCCATCGCAAGGAAGCCAATAACACGCTCCCAGGCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

840

Amino Acids

95.72

Weight (kDa)

9.33

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1739
AasI GACNNNNNNGTC 1 cut(s) 2444
AatII GACGTC 1 cut(s) 1628
Acc36I ACCTGC 1 cut(s) 2099
AccB1I GGYRCC 1 cut(s) 1123
AccBSI CCGCTC 1 cut(s) 2411
AccI GTMKAC 2 cut(s) 2239, 2424
AccII CGCG 2 cut(s) 420, 2343
AciI CCGC 6 cut(s) 418, 1196, 1207, 1596, 1889, 2409
AclWI GGATC 8 cut(s) 28, 259, 321, 769, 947, 960, 2453, 2466
AcoI YGGCCR 1 cut(s) 1542
AcsI RAATTY 3 cut(s) 184, 2207, 2321
AcuI CTGAAG 1 cut(s) 2387
AcvI CACGTG 1 cut(s) 1834
AcyI GRCGYC 4 cut(s) 1124, 1552, 1625, 2386
AfaI GTAC 5 cut(s) 156, 720, 1821, 1871, 2102
AfeI AGCGCT 1 cut(s) 356
AfiI CCNNNNNNNGG 4 cut(s) 328, 1508, 1803, 2487
AflII CTTAAG 3 cut(s) 530, 1789, 1979
AflIII ACRYGT 4 cut(s) 270, 1532, 1831, 1833
AhdI GACNNNNNGTC 1 cut(s) 976
AjiI CACGTC 1 cut(s) 1535
AjnI CCWGG 3 cut(s) 778, 1555, 2508
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AluBI AGCT 4 cut(s) 8, 644, 1251, 1379
AluI AGCT 4 cut(s) 8, 644, 1251, 1379
Alw21I GWGCWC 1 cut(s) 1253
Alw26I GTCTC 1 cut(s) 785
AlwI GGATC 8 cut(s) 28, 259, 321, 769, 947, 960, 2453, 2466
Ama87I CYCGRG 2 cut(s) 1460, 1661
Aor51HI AGCGCT 1 cut(s) 356
AoxI GGCC 8 cut(s) 804, 1137, 1181, 1503, 1542, 1643, 1793, 2232
ApeKI GCWGC 1 cut(s) 306
ApoI RAATTY 3 cut(s) 184, 2207, 2321
ArsI GACNNNNNNTTYG 8 cut(s) 1058, 1090, 1749, 1781, 1920, 1952, 2011, 2043
AseI ATTAAT 2 cut(s) 366, 1809
Asp700I GAANNNNTTC 2 cut(s) 602, 1997
AspLEI GCGC 3 cut(s) 357, 1126, 2343
AspS9I GGNCC 9 cut(s) 804, 1181, 1201, 1504, 1643, 1794, 2093, 2149, 2233
AsuC2I CCSGG 5 cut(s) 311, 1287, 1662, 1663, 2091
AsuHPI GGTGA 8 cut(s) 595, 729, 1156, 1358, 1382, 1523, 1787, 1960
AsuII TTCGAA 1 cut(s) 1926
AsuNHI GCTAGC 1 cut(s) 1379
AvaI CYCGRG 2 cut(s) 1460, 1661
AvaII GGWCC 3 cut(s) 1201, 2093, 2149
BamHI GGATCC 2 cut(s) 952, 2458
BanI GGYRCC 1 cut(s) 1123
BanII GRGCYC 1 cut(s) 1253
BauI CACGAG 1 cut(s) 1768
BbrPI CACGTG 1 cut(s) 1834
BbsI GAAGAC 2 cut(s) 456, 1680
Bbv12I GWGCWC 1 cut(s) 1253
BbvI GCAGC 1 cut(s) 318
BccI CCATC 7 cut(s) 330, 748, 1433, 1808, 1907, 2187, 2489
BceAI ACGGC 3 cut(s) 488, 496, 1557
BciT130I CCWGG 3 cut(s) 780, 1557, 2510
BcnI CCSGG 5 cut(s) 311, 1287, 1662, 1663, 2091
BcoDI GTCTC 1 cut(s) 785
BfaI CTAG 3 cut(s) 1380, 1844, 2055
BfoI RGCGCY 2 cut(s) 358, 1127
BfrI CTTAAG 3 cut(s) 530, 1789, 1979
BfuAI ACCTGC 1 cut(s) 2099
BisI GCNGC 2 cut(s) 307, 418
BlpI GCTNAGC 1 cut(s) 358
BlsI GCNGC 2 cut(s) 308, 419
BmcAI AGTACT 1 cut(s) 1821
Bme1390I CCNGG 8 cut(s) 311, 780, 1287, 1557, 1662, 1663, 2091, 2510
Bme18I GGWCC 3 cut(s) 1201, 2093, 2149
BmeRI GACNNNNNGTC 1 cut(s) 976
BmeT110I CYCGRG 2 cut(s) 1460, 1661
BmgBI CACGTC 1 cut(s) 1535
BmgT120I GGNCC 9 cut(s) 804, 1181, 1201, 1504, 1643, 1794, 2093, 2149, 2233
BmiI GGNNCC 4 cut(s) 954, 1125, 1182, 2460
BmrFI CCNGG 8 cut(s) 311, 780, 1287, 1557, 1662, 1663, 2091, 2510
BmrI ACTGGG 1 cut(s) 811
BmsI GCATC 5 cut(s) 70, 293, 401, 1416, 2243
BmtI GCTAGC 1 cut(s) 1383
BmuI ACTGGG 1 cut(s) 811
BpiI GAAGAC 2 cut(s) 456, 1680
Bpu1102I GCTNAGC 1 cut(s) 358
Bpu14I TTCGAA 1 cut(s) 1926
BpuEI CTTGAG 2 cut(s) 180, 578
BpuMI CCSGG 5 cut(s) 311, 1287, 1662, 1663, 2091
Bsa29I ATCGAT 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 1834
BsaBI GATNNNNATC 1 cut(s) 1302
BsaHI GRCGYC 4 cut(s) 1124, 1552, 1625, 2386
BsaWI WCCGGW 1 cut(s) 1435
BsaXI ACNNNNNCTCC 4 cut(s) 876, 906, 921, 951
Bsc4I CCNNNNNNNGG 4 cut(s) 328, 1508, 1803, 2487
Bse118I RCCGGY 3 cut(s) 539, 1501, 2382
Bse1I ACTGG 2 cut(s) 297, 806
Bse3DI GCAATG 2 cut(s) 490, 2349
Bse8I GATNNNNATC 1 cut(s) 1302
BseBI CCWGG 3 cut(s) 780, 1557, 2510
BseCI ATCGAT 1 cut(s) 316
BseGI GGATG 7 cut(s) 1282, 1431, 1444, 2198, 2258, 2466, 2476
BseJI GATNNNNATC 1 cut(s) 1302
BseLI CCNNNNNNNGG 4 cut(s) 328, 1508, 1803, 2487
BseMI GCAATG 2 cut(s) 490, 2349
BseMII CTCAG 1 cut(s) 1934
BseNI ACTGG 2 cut(s) 297, 806
BseRI GAGGAG 2 cut(s) 724, 2180
BseX3I CGGCCG 1 cut(s) 1542
BseXI GCAGC 1 cut(s) 318
BsgI GTGCAG 1 cut(s) 461
Bsh1236I CGCG 2 cut(s) 420, 2343
Bsh1285I CGRYCG 1 cut(s) 1545
BshFI GGCC 8 cut(s) 806, 1139, 1183, 1505, 1544, 1645, 1795, 2234
BshNI GGYRCC 1 cut(s) 1123
BshVI ATCGAT 1 cut(s) 316
BsiEI CGRYCG 1 cut(s) 1545
BsiHKAI GWGCWC 1 cut(s) 1253
BsiHKCI CYCGRG 2 cut(s) 1460, 1661
BsiSI CCGG 8 cut(s) 311, 540, 1286, 1436, 1502, 1662, 2091, 2383
BslFI GGGAC 3 cut(s) 983, 1302, 1679
BslI CCNNNNNNNGG 4 cut(s) 328, 1508, 1803, 2487
BsmAI GTCTC 1 cut(s) 785
BsmFI GGGAC 3 cut(s) 983, 1302, 1679
BsmI GAATGC 2 cut(s) 1615, 2303
BsnI GGCC 8 cut(s) 806, 1139, 1183, 1505, 1544, 1645, 1795, 2234
BsoBI CYCGRG 2 cut(s) 1460, 1661
Bsp119I TTCGAA 1 cut(s) 1926
Bsp1286I GDGCHC 1 cut(s) 1253
Bsp1720I GCTNAGC 1 cut(s) 358
Bsp19I CCATGG 3 cut(s) 811, 922, 1577
BspACI CCGC 6 cut(s) 418, 1196, 1207, 1596, 1889, 2409
BspANI GGCC 8 cut(s) 806, 1139, 1183, 1505, 1544, 1645, 1795, 2234
BspCNI CTCAG 1 cut(s) 1935
BspDI ATCGAT 1 cut(s) 316
BspFNI CGCG 2 cut(s) 420, 2343
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 4 cut(s) 954, 1125, 1182, 2460
BspMI ACCTGC 1 cut(s) 2099
BspOI GCTAGC 1 cut(s) 1383
BspPI GGATC 8 cut(s) 28, 259, 321, 769, 947, 960, 2453, 2466
BspT104I TTCGAA 1 cut(s) 1926
BspT107I GGYRCC 1 cut(s) 1123
BspTI CTTAAG 3 cut(s) 530, 1789, 1979
BsrBI CCGCTC 1 cut(s) 2411
BsrDI GCAATG 2 cut(s) 490, 2349
BsrFI RCCGGY 3 cut(s) 539, 1501, 2382
BsrI ACTGG 2 cut(s) 297, 806
BssAI RCCGGY 3 cut(s) 539, 1501, 2382
BssNI GRCGYC 4 cut(s) 1124, 1552, 1625, 2386
BssSI CACGAG 1 cut(s) 1768
BssT1I CCWWGG 4 cut(s) 222, 811, 922, 1577
Bst2BI CACGAG 1 cut(s) 1768
Bst2UI CCWGG 3 cut(s) 780, 1557, 2510
Bst4CI ACNGT 9 cut(s) 50, 331, 718, 903, 1036, 1058, 1319, 1972, 2312
Bst6I CTCTTC 3 cut(s) 156, 1794, 2410
BstACI GRCGYC 4 cut(s) 1124, 1552, 1625, 2386
BstAFI CTTAAG 3 cut(s) 530, 1789, 1979
BstBAI YACGTR 1 cut(s) 1834
BstBI TTCGAA 1 cut(s) 1926
BstC8I GCNNGC 1 cut(s) 1381
BstDEI CTNAG 7 cut(s) 358, 795, 1311, 1629, 1669, 1943, 2097
BstDSI CCRYGG 4 cut(s) 811, 922, 1507, 1577
BstF5I GGATG 7 cut(s) 1282, 1431, 1444, 2198, 2258, 2466, 2476
BstFNI CGCG 2 cut(s) 420, 2343
BstH2I RGCGCY 2 cut(s) 358, 1127
BstHHI GCGC 3 cut(s) 357, 1126, 2343
BstMAI GTCTC 1 cut(s) 785
BstMCI CGRYCG 1 cut(s) 1545
BstMWI GCNNNNNNNGC 1 cut(s) 426
BstNI CCWGG 3 cut(s) 780, 1557, 2510
BstNSI RCATGY 1 cut(s) 2333
BstSCI CCNGG 8 cut(s) 309, 778, 1285, 1555, 1660, 1661, 2089, 2508
BstUI CGCG 2 cut(s) 420, 2343
BstV1I GCAGC 1 cut(s) 318
BstV2I GAAGAC 2 cut(s) 456, 1680
BstX2I RGATCY 2 cut(s) 952, 2458
BstXI CCANNNNNNTGG 1 cut(s) 1885
BstYI RGATCY 2 cut(s) 952, 2458
BstZI CGGCCG 1 cut(s) 1542
Bsu15I ATCGAT 1 cut(s) 316
BsuRI GGCC 8 cut(s) 806, 1139, 1183, 1505, 1544, 1645, 1795, 2234
BsuTUI ATCGAT 1 cut(s) 316
BtgI CCRYGG 4 cut(s) 811, 922, 1507, 1577
BtgZI GCGATG 1 cut(s) 2467
BtrI CACGTC 1 cut(s) 1535
BtsCI GGATG 7 cut(s) 1282, 1431, 1444, 2198, 2258, 2466, 2476
BtsIMutI CAGTG 6 cut(s) 282, 714, 750, 1224, 1322, 1459
BveI ACCTGC 1 cut(s) 2099
Cac8I GCNNGC 1 cut(s) 1381
CciI TCATGA 1 cut(s) 96
CfoI GCGC 3 cut(s) 357, 1126, 2343
Cfr10I RCCGGY 3 cut(s) 539, 1501, 2382
Cfr13I GGNCC 9 cut(s) 804, 1181, 1201, 1504, 1643, 1794, 2093, 2149, 2233
Cfr9I CCCGGG 1 cut(s) 1661
ClaI ATCGAT 1 cut(s) 316
CseI GACGC 3 cut(s) 1274, 1541, 2375
Csp6I GTAC 5 cut(s) 155, 719, 1820, 1870, 2101
CviQI GTAC 5 cut(s) 155, 719, 1820, 1870, 2101
DdeI CTNAG 7 cut(s) 358, 795, 1311, 1629, 1669, 1943, 2097
DinI GGCGCC 1 cut(s) 1125
DraI TTTAAA 1 cut(s) 685
DrdI GACNNNNNNGTC 1 cut(s) 2444
DriI GACNNNNNGTC 1 cut(s) 976
DseDI GACNNNNNNGTC 1 cut(s) 2444
EaeI YGGCCR 1 cut(s) 1542
EagI CGGCCG 1 cut(s) 1542
Eam1104I CTCTTC 3 cut(s) 156, 1794, 2410
Eam1105I GACNNNNNGTC 1 cut(s) 976
EarI CTCTTC 3 cut(s) 156, 1794, 2410
EciI GGCGGA 2 cut(s) 1211, 1904
Ecl136II GAGCTC 1 cut(s) 1251
EclXI CGGCCG 1 cut(s) 1542
Eco130I CCWWGG 4 cut(s) 222, 811, 922, 1577
Eco24I GRGCYC 1 cut(s) 1253
Eco47I GGWCC 3 cut(s) 1201, 2093, 2149
Eco47III AGCGCT 1 cut(s) 356
Eco52I CGGCCG 1 cut(s) 1542
Eco53kI GAGCTC 1 cut(s) 1251
Eco57I CTGAAG 1 cut(s) 2387
Eco72I CACGTG 1 cut(s) 1834
Eco88I CYCGRG 2 cut(s) 1460, 1661
EcoICRI GAGCTC 1 cut(s) 1251
EcoRII CCWGG 3 cut(s) 778, 1555, 2508
EcoT14I CCWWGG 4 cut(s) 222, 811, 922, 1577
EcoT22I ATGCAT 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 1253
EgeI GGCGCC 1 cut(s) 1125
EheI GGCGCC 1 cut(s) 1125
ErhI CCWWGG 4 cut(s) 222, 811, 922, 1577
FalI AAGNNNNNCTT 2 cut(s) 2447, 2479
FaqI GGGAC 3 cut(s) 983, 1302, 1679
FauNDI CATATG 1 cut(s) 211
FblI GTMKAC 2 cut(s) 2239, 2424
Fnu4HI GCNGC 2 cut(s) 307, 418
FokI GGATG 7 cut(s) 1269, 1438, 1451, 2205, 2265, 2453, 2463
FriOI GRGCYC 1 cut(s) 1253
Fsp4HI GCNGC 2 cut(s) 307, 418
FspBI CTAG 3 cut(s) 1380, 1844, 2055
GlaI GCGC 3 cut(s) 356, 1125, 2342
GluI GCNGC 2 cut(s) 307, 418
HaeII RGCGCY 2 cut(s) 358, 1127
HaeIII GGCC 8 cut(s) 806, 1139, 1183, 1505, 1544, 1645, 1795, 2234
HapII CCGG 8 cut(s) 311, 540, 1286, 1436, 1502, 1662, 2091, 2383
HgaI GACGC 3 cut(s) 1274, 1541, 2375
HhaI GCGC 3 cut(s) 357, 1126, 2343
Hin1I GRCGYC 4 cut(s) 1124, 1552, 1625, 2386
Hin6I GCGC 3 cut(s) 355, 1124, 2341
HinP1I GCGC 3 cut(s) 355, 1124, 2341
HincII GTYRAC 5 cut(s) 1585, 1593, 1919, 2176, 2425
HindII GTYRAC 5 cut(s) 1585, 1593, 1919, 2176, 2425
HinfI GANTC 9 cut(s) 318, 346, 816, 911, 1240, 1676, 2019, 2026, 2405
HpaII CCGG 8 cut(s) 311, 540, 1286, 1436, 1502, 1662, 2091, 2383
HphI GGTGA 8 cut(s) 595, 729, 1156, 1358, 1382, 1523, 1787, 1960
Hpy188I TCNGA 4 cut(s) 327, 351, 1007, 1681
Hpy99I CGWCG 3 cut(s) 1539, 1627, 2429
HpyCH4III ACNGT 9 cut(s) 50, 331, 718, 903, 1036, 1058, 1319, 1972, 2312
HpyCH4IV ACGT 5 cut(s) 270, 461, 1534, 1625, 1833
HpyF10VI GCNNNNNNNGC 1 cut(s) 426
HpyF3I CTNAG 7 cut(s) 358, 795, 1311, 1629, 1669, 1943, 2097
HpySE526I ACGT 5 cut(s) 270, 461, 1534, 1625, 1833
Hsp92I GRCGYC 4 cut(s) 1124, 1552, 1625, 2386
HspAI GCGC 3 cut(s) 355, 1124, 2341
KasI GGCGCC 1 cut(s) 1123
LmnI GCTCC 3 cut(s) 1256, 1891, 2510
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 5 cut(s) 70, 293, 401, 1416, 2243
MaeI CTAG 3 cut(s) 1380, 1844, 2055
MaeII ACGT 5 cut(s) 270, 461, 1534, 1625, 1833
MaeIII GTNAC 3 cut(s) 745, 879, 1765
MbiI CCGCTC 1 cut(s) 2411
MfeI CAATTG 1 cut(s) 650
MflI RGATCY 2 cut(s) 952, 2458
MhlI GDGCHC 1 cut(s) 1253
Mly113I GGCGCC 1 cut(s) 1124
MlyI GAGTC 4 cut(s) 1249, 1670, 2035, 2414
MmeI TCCRAC 6 cut(s) 123, 919, 1055, 1085, 1197, 2127
Mph1103I ATGCAT 1 cut(s) 85
MroXI GAANNNNTTC 2 cut(s) 602, 1997
MslI CAYNNNNRTG 5 cut(s) 397, 483, 1296, 1883, 2334
MspA1I CMGCKG 1 cut(s) 1207
MspCI CTTAAG 3 cut(s) 530, 1789, 1979
MspI CCGG 8 cut(s) 311, 540, 1286, 1436, 1502, 1662, 2091, 2383
MspR9I CCNGG 8 cut(s) 311, 780, 1287, 1557, 1662, 1663, 2091, 2510
MunI CAATTG 1 cut(s) 650
Mva1269I GAATGC 2 cut(s) 1615, 2303
MvaI CCWGG 3 cut(s) 780, 1557, 2510
MvnI CGCG 2 cut(s) 420, 2343
MwoI GCNNNNNNNGC 1 cut(s) 426
NarI GGCGCC 1 cut(s) 1124
NciI CCSGG 5 cut(s) 311, 1287, 1662, 1663, 2091
NcoI CCATGG 3 cut(s) 811, 922, 1577
NdeI CATATG 1 cut(s) 211
NheI GCTAGC 1 cut(s) 1379
NlaIV GGNNCC 4 cut(s) 954, 1125, 1182, 2460
NmeAIII GCCGAG 1 cut(s) 1165
NmuCI GTSAC 3 cut(s) 745, 879, 1765
NsiI ATGCAT 1 cut(s) 85
NspI RCATGY 1 cut(s) 2333
NspV TTCGAA 1 cut(s) 1926
PagI TCATGA 1 cut(s) 96
PasI CCCWGGG 1 cut(s) 779
PctI GAATGC 2 cut(s) 1615, 2303
PdmI GAANNNNTTC 2 cut(s) 602, 1997
PfeI GAWTC 5 cut(s) 318, 346, 816, 911, 2019
PfoI TCCNGGA 2 cut(s) 1285, 1555
PkrI GCNGC 2 cut(s) 308, 419
PleI GAGTC 4 cut(s) 1248, 1670, 2034, 2413
PluTI GGCGCC 1 cut(s) 1127
PmaCI CACGTG 1 cut(s) 1834
PmlI CACGTG 1 cut(s) 1834
PpsI GAGTC 4 cut(s) 1248, 1670, 2034, 2413
Ppu21I YACGTR 1 cut(s) 1834
PshBI ATTAAT 2 cut(s) 366, 1809
PsiI TTATAA 1 cut(s) 1739
Psp124BI GAGCTC 1 cut(s) 1253
Psp6I CCWGG 3 cut(s) 778, 1555, 2508
PspCI CACGTG 1 cut(s) 1834
PspGI CCWGG 3 cut(s) 778, 1555, 2508
PspN4I GGNNCC 4 cut(s) 954, 1125, 1182, 2460
PspPI GGNCC 9 cut(s) 804, 1181, 1201, 1504, 1643, 1794, 2093, 2149, 2233
PsuI RGATCY 2 cut(s) 952, 2458
RsaI GTAC 5 cut(s) 156, 720, 1821, 1871, 2102
RsaNI GTAC 5 cut(s) 155, 719, 1820, 1870, 2101
RseI CAYNNNNRTG 5 cut(s) 397, 483, 1296, 1883, 2334
SacI GAGCTC 1 cut(s) 1253
SalI GTCGAC 1 cut(s) 2423
SatI GCNGC 2 cut(s) 307, 418
Sau96I GGNCC 9 cut(s) 804, 1181, 1201, 1504, 1643, 1794, 2093, 2149, 2233
ScaI AGTACT 1 cut(s) 1821
SchI GAGTC 4 cut(s) 1249, 1670, 2035, 2414
ScrFI CCNGG 8 cut(s) 311, 780, 1287, 1557, 1662, 1663, 2091, 2510
SduI GDGCHC 1 cut(s) 1253
SfaNI GCATC 5 cut(s) 70, 293, 401, 1416, 2243
SfoI GGCGCC 1 cut(s) 1125
SfuI TTCGAA 1 cut(s) 1926
SgrAI CRCCGGYG 1 cut(s) 539
SinI GGWCC 3 cut(s) 1201, 2093, 2149
SmaI CCCGGG 1 cut(s) 1663
SmiMI CAYNNNNRTG 5 cut(s) 397, 483, 1296, 1883, 2334
SmlI CTYRAG 5 cut(s) 195, 530, 557, 1789, 1979
SmoI CTYRAG 5 cut(s) 195, 530, 557, 1789, 1979
SsiI CCGC 6 cut(s) 418, 1196, 1207, 1596, 1889, 2409
SspDI GGCGCC 1 cut(s) 1123
SspMI CTAG 3 cut(s) 1380, 1844, 2055
SstI GAGCTC 1 cut(s) 1253
StyD4I CCNGG 8 cut(s) 309, 778, 1285, 1555, 1660, 1661, 2089, 2508
StyI CCWWGG 4 cut(s) 222, 811, 922, 1577
TaaI ACNGT 9 cut(s) 50, 331, 718, 903, 1036, 1058, 1319, 1972, 2312
TaiI ACGT 5 cut(s) 273, 464, 1537, 1628, 1836
TatI WGTACW 3 cut(s) 718, 1819, 2100
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 5 cut(s) 318, 346, 816, 911, 2019
TscAI CASTG 6 cut(s) 282, 721, 750, 1231, 1329, 1459
TseFI GTSAC 3 cut(s) 745, 879, 1765
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 3 cut(s) 745, 879, 1765
TspMI CCCGGG 1 cut(s) 1661
TspRI CASTG 6 cut(s) 282, 721, 750, 1231, 1329, 1459
Vha464I CTTAAG 3 cut(s) 530, 1789, 1979
VpaK11BI GGWCC 3 cut(s) 1201, 2093, 2149
VspI ATTAAT 2 cut(s) 366, 1809
XapI RAATTY 3 cut(s) 184, 2207, 2321
XbaI TCTAGA 1 cut(s) 1843
XceI RCATGY 1 cut(s) 2333
XmaI CCCGGG 1 cut(s) 1661
XmiI GTMKAC 2 cut(s) 2239, 2424
XmnI GAANNNNTTC 2 cut(s) 602, 1997
XspI CTAG 3 cut(s) 1380, 1844, 2055
ZraI GACGTC 1 cut(s) 1626
ZrmI AGTACT 1 cut(s) 1821
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.