RchiOBHm_Chr6g0266661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000268
Physical Location & Seq
Forward (+)
23136936 .. 23140253
3318 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23915

Sequence Viewer

Length: 1359 bp
ATGGATGAGTTGATGAATATCGGCAGTCTCAAGGACAGAGGAAAAAGACCTAGGATGTACATTGAGAAGAAACAACCTAGCAAACTCAGTTTTTTTAATTTTTTTACAATTAAATCTCAAGAGATGAAGGAGAAAAACATTAAGGTGGATGTTATGGTTAGGAGACAGCTGGCTAATACATGGAGGTCTATGAAACCTGAAGAGAAGGCAAAGTATGCTGGGTCATATCCATGTGTTAAAGTTGGTTGTAGGGAATTCAGACATGATTTTTGTGGATTGAAACCTATAATCACCCAATGTCGTCCGGATGTTTTTAAAGATGTCATTTCAACATTTTCTGATGAAAGAAAAGCTGCAGTAGAAGAAATGGGTTTTGGGTTACTATTGCAGCTTCGCTGTGACCAATTGCAGTGCACCTTGTGTGGTTGGTTGGTTGATAGATTTGATGCTGATGCATCTTCAATTGAGGTACATGGTAAGACATTCAAACTTAAACCATCTGACTTTGAGAATATAATGGGGGTCAAAGATGGAGGACATGATGTTGAGCTAAGTGACTCAGAGGATAACAACATACACGGATTAAAGATTATCCGTTGTGGAAAAGATAGAAATCAAATAAGTATGAGAGAAATAGCAAAGAGGTTGAGACAGACAAATATTGTCGATGACACCTTTAGAGTTGGGTTCGTGTTATTTTTGCTGGGCACCTTGCTCTGTCCTTCTTCAATTATATTGGCTTCAAAGTACCTGCAACCATTAAGGGGAACGAGTGATATAAAACTCAAAAATTGGGCGACATTCTCATTCAAATATCTAGTTGAAGGTGTTAGTTCCTTTAAGAATAGAAAACGATCCTGTGTGATCAATGGATGTGTACTATTCTTGCAGCTCTTTTATTTTGATCTCATTGTTCATGGAAGAACGTTTGTAAATAGGTCATTAGCACCCATTGTTGCATGGGGAGATAAGGAGGCAAATGAATTAATTAAGTGGATCAGGACTCACAAAGGGGGTTTTGAAAGTGTGGACATTACTGTTGTTTCTGACCGTACAGCCTTGATCAGCAAGGAAGATGAGGTGGCCCTGAAGAATGGTCTTGGGAGTGTACACATAAAGGTTACTGCAAATGAACGGATGCAGCGAAAGACAAATGATGAAATGAAAGTGGCTGAATTGGAAGCTAAACTTGACAGTGAGATGAGCAAAATTGAAGGCCTTACTTACTGGCAAGTCTTTCAAGCTACTAACATTTTGGCTACCAGATTTGACCTGCTGAGCGCGTTCCTTCCCATGTCCCAGGAAAGGAAGAAGGATTATGTTTTATATCTCTTAGAGCATGGCACCCATGGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

452

Amino Acids

51.77

Weight (kDa)

9.06

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 759, 1281
AccB1I GGYRCC 2 cut(s) 707, 1343
AccII CGCG 1 cut(s) 1283
AccIII TCCGGA 1 cut(s) 304
AclI AACGTT 1 cut(s) 926
AclWI GGATC 2 cut(s) 849, 1004
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 2 cut(s) 219, 1109
AdeI CACNNNGTG 1 cut(s) 420
AfaI GTAC 6 cut(s) 59, 471, 749, 879, 1054, 1110
AfiI CCNNNNNNNGG 2 cut(s) 764, 1305
AjnI CCWGG 1 cut(s) 1299
AjuI GAANNNNNNNTTGG 2 cut(s) 357, 389
AluBI AGCT 7 cut(s) 169, 353, 391, 550, 892, 1184, 1244
AluI AGCT 7 cut(s) 169, 353, 391, 550, 892, 1184, 1244
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 3 cut(s) 32, 157, 643
Alw44I GTGCAC 1 cut(s) 412
AlwI GGATC 2 cut(s) 849, 1004
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 2 cut(s) 1083, 1216
ApaLI GTGCAC 1 cut(s) 412
ApeKI GCWGC 4 cut(s) 353, 388, 889, 1141
ApoI RAATTY 1 cut(s) 254
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
AseI ATTAAT 1 cut(s) 986
AspA2I CCTAGG 1 cut(s) 50
AspLEI GCGC 1 cut(s) 1283
AspS9I GGNCC 1 cut(s) 1084
AsuHPI GGTGA 1 cut(s) 283
AvrII CCTAGG 1 cut(s) 50
BaeGI GKGCMC 2 cut(s) 416, 710
BanI GGYRCC 2 cut(s) 707, 1343
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 4 cut(s) 340, 400, 901, 1153
BccI CCATC 2 cut(s) 505, 524
BciT130I CCWGG 1 cut(s) 1301
BclI TGATCA 2 cut(s) 864, 1062
BcoDI GTCTC 3 cut(s) 32, 157, 643
BfaI CTAG 3 cut(s) 51, 78, 818
BfmI CTRYAG 1 cut(s) 354
BfuAI ACCTGC 2 cut(s) 759, 1281
BisI GCNGC 4 cut(s) 354, 389, 890, 1142
BlnI CCTAGG 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 1277
BlsI GCNGC 4 cut(s) 355, 390, 891, 1143
Bme1390I CCNGG 1 cut(s) 1301
BmgT120I GGNCC 1 cut(s) 1084
BmiI GGNNCC 2 cut(s) 709, 1345
BmrFI CCNGG 1 cut(s) 1301
BmsI GCATC 4 cut(s) 436, 442, 464, 1128
Bpu1102I GCTNAGC 1 cut(s) 1277
BpuEI CTTGAG 2 cut(s) 14, 102
BsaBI GATNNNNATC 2 cut(s) 17, 612
BsaJI CCNNGG 3 cut(s) 50, 1299, 1348
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 2 cut(s) 764, 1305
Bse1I ACTGG 1 cut(s) 1232
Bse8I GATNNNNATC 2 cut(s) 17, 612
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 1 cut(s) 1301
BseDI CCNNGG 3 cut(s) 50, 1299, 1348
BseGI GGATG 6 cut(s) 10, 60, 154, 313, 878, 1143
BseJI GATNNNNATC 2 cut(s) 17, 612
BseLI CCNNNNNNNGG 2 cut(s) 764, 1305
BseMII CTCAG 3 cut(s) 100, 573, 1268
BseNI ACTGG 1 cut(s) 1232
BseSI GKGCMC 2 cut(s) 416, 710
BseXI GCAGC 4 cut(s) 340, 400, 901, 1153
BseYI CCCAGC 2 cut(s) 218, 703
Bsh1236I CGCG 1 cut(s) 1283
BshFI GGCC 2 cut(s) 1085, 1218
BshNI GGYRCC 2 cut(s) 707, 1343
BsiHKAI GWGCWC 1 cut(s) 416
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 1 cut(s) 1282
BslI CCNNNNNNNGG 2 cut(s) 764, 1305
BsmAI GTCTC 3 cut(s) 32, 157, 643
BsmFI GGGAC 1 cut(s) 1282
BsnI GGCC 2 cut(s) 1085, 1218
Bsp1286I GDGCHC 2 cut(s) 416, 710
Bsp13I TCCGGA 1 cut(s) 304
Bsp1407I TGTACA 2 cut(s) 57, 1108
Bsp143I GATC 5 cut(s) 854, 864, 904, 996, 1062
Bsp1720I GCTNAGC 1 cut(s) 1277
Bsp19I CCATGG 1 cut(s) 1348
BspANI GGCC 2 cut(s) 1085, 1218
BspCNI CTCAG 3 cut(s) 99, 572, 1269
BspEI TCCGGA 1 cut(s) 304
BspFNI CGCG 1 cut(s) 1283
BspLI GGNNCC 2 cut(s) 709, 1345
BspMAI CTGCAG 1 cut(s) 358
BspMI ACCTGC 2 cut(s) 759, 1281
BspPI GGATC 2 cut(s) 849, 1004
BspT107I GGYRCC 2 cut(s) 707, 1343
BsrGI TGTACA 2 cut(s) 57, 1108
BsrI ACTGG 1 cut(s) 1232
BssECI CCNNGG 3 cut(s) 50, 1299, 1348
BssMI GATC 5 cut(s) 854, 864, 904, 996, 1062
BssT1I CCWWGG 2 cut(s) 50, 1348
Bst2UI CCWGG 1 cut(s) 1301
Bst4CI ACNGT 3 cut(s) 1039, 1052, 1196
Bst6I CTCTTC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 215
BstAUI TGTACA 2 cut(s) 57, 1108
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 5 cut(s) 86, 551, 559, 1277, 1333
BstDSI CCRYGG 1 cut(s) 1348
BstF5I GGATG 6 cut(s) 10, 60, 154, 313, 878, 1143
BstFNI CGCG 1 cut(s) 1283
BstHHI GCGC 1 cut(s) 1283
BstKTI GATC 5 cut(s) 857, 867, 907, 999, 1065
BstMAI GTCTC 3 cut(s) 32, 157, 643
BstMBI GATC 5 cut(s) 854, 864, 904, 996, 1062
BstMWI GCNNNNNNNGC 2 cut(s) 215, 1350
BstNI CCWGG 1 cut(s) 1301
BstSCI CCNGG 1 cut(s) 1299
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 2 cut(s) 416, 710
BstUI CGCG 1 cut(s) 1283
BstV1I GCAGC 4 cut(s) 340, 400, 901, 1153
BsuRI GGCC 2 cut(s) 1085, 1218
BtgI CCRYGG 1 cut(s) 1348
BtsCI GGATG 6 cut(s) 10, 60, 154, 313, 878, 1143
BtsI GCAGTG 1 cut(s) 416
BtsIMutI CAGTG 2 cut(s) 416, 1201
BveI ACCTGC 2 cut(s) 759, 1281
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 1283
Cfr13I GGNCC 1 cut(s) 1084
Csp6I GTAC 6 cut(s) 58, 470, 748, 878, 1053, 1109
CviQI GTAC 6 cut(s) 58, 470, 748, 878, 1053, 1109
DdeI CTNAG 5 cut(s) 86, 551, 559, 1277, 1333
DpnI GATC 5 cut(s) 856, 866, 906, 998, 1064
DpnII GATC 5 cut(s) 854, 864, 904, 996, 1062
DraI TTTAAA 1 cut(s) 316
DraIII CACNNNGTG 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 50, 1348
Eco147I AGGCCT 1 cut(s) 1218
Eco57I CTGAAG 2 cut(s) 219, 1109
EcoRI GAATTC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 1299
EcoT14I CCWWGG 2 cut(s) 50, 1348
EcoT22I ATGCAT 1 cut(s) 457
ErhI CCWWGG 2 cut(s) 50, 1348
FalI AAGNNNNNCTT 2 cut(s) 1173, 1205
FaqI GGGAC 1 cut(s) 1282
FbaI TGATCA 2 cut(s) 864, 1062
Fnu4HI GCNGC 4 cut(s) 354, 389, 890, 1142
FokI GGATG 6 cut(s) 17, 67, 161, 320, 885, 1150
Fsp4HI GCNGC 4 cut(s) 354, 389, 890, 1142
FspBI CTAG 3 cut(s) 51, 78, 818
GlaI GCGC 1 cut(s) 1282
GluI GCNGC 4 cut(s) 354, 389, 890, 1142
GsaI CCCAGC 2 cut(s) 222, 707
HaeIII GGCC 2 cut(s) 1085, 1218
HapII CCGG 1 cut(s) 305
HhaI GCGC 1 cut(s) 1283
Hin6I GCGC 1 cut(s) 1281
HinP1I GCGC 1 cut(s) 1281
HinfI GANTC 2 cut(s) 557, 1003
HpaII CCGG 1 cut(s) 305
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 5 cut(s) 414, 878, 1030, 1109, 1111
Hpy188I TCNGA 5 cut(s) 260, 340, 502, 562, 1048
Hpy188III TCNNGA 3 cut(s) 119, 305, 1000
Hpy8I GTNNAC 5 cut(s) 414, 878, 1030, 1109, 1111
HpyAV CCTTC 7 cut(s) 121, 199, 732, 818, 1208, 1298, 1306
HpyCH4III ACNGT 3 cut(s) 1039, 1052, 1196
HpyCH4IV ACGT 1 cut(s) 926
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 1350
HpyF3I CTNAG 5 cut(s) 86, 551, 559, 1277, 1333
HpySE526I ACGT 1 cut(s) 926
HspAI GCGC 1 cut(s) 1281
Kpn2I TCCGGA 1 cut(s) 304
Ksp22I TGATCA 2 cut(s) 864, 1062
Kzo9I GATC 5 cut(s) 854, 864, 904, 996, 1062
Lsp1109I GCAGC 4 cut(s) 340, 400, 901, 1153
LweI GCATC 4 cut(s) 436, 442, 464, 1128
MaeI CTAG 3 cut(s) 51, 78, 818
MaeII ACGT 1 cut(s) 926
MaeIII GTNAC 4 cut(s) 378, 398, 554, 1120
MalI GATC 5 cut(s) 856, 866, 906, 998, 1064
MboI GATC 5 cut(s) 854, 864, 904, 996, 1062
MboII GAAGA 9 cut(s) 79, 212, 374, 450, 717, 933, 1085, 1102, 1321
MfeI CAATTG 2 cut(s) 404, 462
MhlI GDGCHC 2 cut(s) 416, 710
MlyI GAGTC 2 cut(s) 551, 997
MnlI CCTC 8 cut(s) 32, 177, 460, 527, 556, 636, 967, 1072
Mph1103I ATGCAT 1 cut(s) 457
MroI TCCGGA 1 cut(s) 304
MslI CAYNNNNRTG 2 cut(s) 143, 229
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 1301
MunI CAATTG 2 cut(s) 404, 462
MvaI CCWGG 1 cut(s) 1301
MvnI CGCG 1 cut(s) 1283
MwoI GCNNNNNNNGC 2 cut(s) 215, 1350
NcoI CCATGG 1 cut(s) 1348
NdeII GATC 5 cut(s) 854, 864, 904, 996, 1062
NlaIV GGNNCC 2 cut(s) 709, 1345
NmuCI GTSAC 2 cut(s) 398, 554
NsiI ATGCAT 1 cut(s) 457
PacI TTAATTAA 1 cut(s) 990
PceI AGGCCT 1 cut(s) 1218
PcsI WCGNNNNNNNCGW 1 cut(s) 1141
PkrI GCNGC 4 cut(s) 355, 390, 891, 1143
PleI GAGTC 2 cut(s) 551, 997
PpsI GAGTC 2 cut(s) 551, 997
PshBI ATTAAT 1 cut(s) 986
Psp1406I AACGTT 1 cut(s) 926
Psp6I CCWGG 1 cut(s) 1299
PspFI CCCAGC 2 cut(s) 218, 703
PspGI CCWGG 1 cut(s) 1299
PspN4I GGNNCC 2 cut(s) 709, 1345
PspPI GGNCC 1 cut(s) 1084
PstI CTGCAG 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 6 cut(s) 59, 471, 749, 879, 1054, 1110
RsaNI GTAC 6 cut(s) 58, 470, 748, 878, 1053, 1109
RseI CAYNNNNRTG 2 cut(s) 143, 229
SatI GCNGC 4 cut(s) 354, 389, 890, 1142
Sau3AI GATC 5 cut(s) 854, 864, 904, 996, 1062
Sau96I GGNCC 1 cut(s) 1084
SchI GAGTC 2 cut(s) 551, 997
ScrFI CCNGG 1 cut(s) 1301
SduI GDGCHC 2 cut(s) 416, 710
SfaNI GCATC 4 cut(s) 436, 442, 464, 1128
SfcI CTRYAG 1 cut(s) 354
SmiMI CAYNNNNRTG 2 cut(s) 143, 229
SmlI CTYRAG 2 cut(s) 29, 117
SmoI CTYRAG 2 cut(s) 29, 117
SseBI AGGCCT 1 cut(s) 1218
SspI AATATT 1 cut(s) 661
SspMI CTAG 3 cut(s) 51, 78, 818
StuI AGGCCT 1 cut(s) 1218
StyD4I CCNGG 1 cut(s) 1299
StyI CCWWGG 2 cut(s) 50, 1348
TaaI ACNGT 3 cut(s) 1039, 1052, 1196
TaiI ACGT 1 cut(s) 929
TaqI TCGA 1 cut(s) 666
TatI WGTACW 3 cut(s) 57, 877, 1108
TscAI CASTG 2 cut(s) 416, 1201
TseFI GTSAC 2 cut(s) 398, 554
TseI GCWGC 4 cut(s) 353, 388, 889, 1141
Tsp45I GTSAC 2 cut(s) 398, 554
TspDTI ATGAA 9 cut(s) 29, 140, 206, 357, 905, 996, 1146, 1173, 1178
TspGWI ACGGA 3 cut(s) 584, 594, 1150
TspRI CASTG 2 cut(s) 416, 1201
VneI GTGCAC 1 cut(s) 412
VspI ATTAAT 1 cut(s) 986
XapI RAATTY 1 cut(s) 254
XmaJI CCTAGG 1 cut(s) 50
XspI CTAG 3 cut(s) 51, 78, 818
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.