RLG00000030127

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000268
Physical Location & Seq
Forward (+)
55870357 .. 55870775
419 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030127

Sequence Viewer

Length: 339 bp
ATGGAGGATTATGAGAATGCATCCAAAGCAGGGGACAAGTATCATTCTGTGAACGAGCGTCTGCGCATAGCTCTCACCTTGTTGAGGCATCCGGACCACCAAGCACGCAATAATATTGCTGAAGCTAGACAAAGGTCACTTCAAAAAGTTATATGCAAGAAACGTGGACCAAACACAATGAAGATAGATCAAGATAGCACAGCACGCAGCGATACTGATGAAGGTTTGCAAAGGTCTCCAAAGAAAATGAAGGCAATCCACGAAATAGATGCAGCCAACGTGAACAAGAAAAAAGGTCCTGGTCGGCCTCGTGGATCAAAGAATAAACCTAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.71

Weight (kDa)

10.19

Isoelectric Point (pI)

54.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 65
AccIII TCCGGA 1 cut(s) 91
AclWI GGATC 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 30, 84
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 2 cut(s) 71, 125
AluI AGCT 2 cut(s) 71, 125
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 322
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 207, 272
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 3 cut(s) 94, 167, 296
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 3 cut(s) 94, 167, 296
BauI CACGAG 1 cut(s) 309
BbvI GCAGC 2 cut(s) 219, 284
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 126
BisI GCNGC 2 cut(s) 208, 273
BlsI GCNGC 2 cut(s) 209, 274
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 3 cut(s) 94, 167, 296
BmgT120I GGNCC 3 cut(s) 94, 167, 296
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 3 cut(s) 29, 97, 259
BoxI GACNNNNGTC 1 cut(s) 133
BsaI GGTCTC 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 84
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 20, 88
BseLI CCNNNNNNNGG 2 cut(s) 30, 84
BseXI GCAGC 2 cut(s) 219, 284
BshFI GGCC 1 cut(s) 307
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 30, 84
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 307
Bso31I GGTCTC 1 cut(s) 240
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 2 cut(s) 187, 314
BspANI GGCC 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 91
BspPI GGATC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 240
BssMI GATC 2 cut(s) 187, 314
BssSI CACGAG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 106, 205
BstDEI CTNAG 1 cut(s) 330
BstENI CCTNNNNNAGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 20, 88
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 190, 317
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 187, 314
BstMWI GCNNNNNNNGC 2 cut(s) 26, 204
BstNI CCWGG 1 cut(s) 300
BstPAI GACNNNNGTC 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 219, 284
BsuRI GGCC 1 cut(s) 307
BtsCI GGATG 2 cut(s) 20, 88
Cac8I GCNNGC 2 cut(s) 106, 205
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 3 cut(s) 94, 167, 296
CseI GACGC 1 cut(s) 47
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviJI RGCY 4 cut(s) 71, 125, 275, 307
CviKI_1 RGCY 4 cut(s) 71, 125, 275, 307
DdeI CTNAG 1 cut(s) 330
DpnI GATC 2 cut(s) 189, 316
DpnII GATC 2 cut(s) 187, 314
Eco31I GGTCTC 1 cut(s) 240
Eco47I GGWCC 3 cut(s) 94, 167, 296
Eco57I CTGAAG 1 cut(s) 141
EcoNI CCTNNNNNAGG 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 22
FaiI YATR 4 cut(s) 12, 68, 152, 154
FaqI GGGAC 1 cut(s) 47
Fnu4HI GCNGC 2 cut(s) 208, 273
FokI GGATG 2 cut(s) 7, 75
Fsp4HI GCNGC 2 cut(s) 208, 273
FspBI CTAG 1 cut(s) 126
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 1 cut(s) 65
GluI GCNGC 2 cut(s) 208, 273
HaeIII GGCC 1 cut(s) 307
HapII CCGG 1 cut(s) 92
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 52, 167, 283
Hpy188III TCNNGA 2 cut(s) 92, 191
Hpy8I GTNNAC 3 cut(s) 52, 167, 283
HpyAV CCTTC 2 cut(s) 215, 244
HpyCH4IV ACGT 2 cut(s) 163, 279
HpyCH4V TGCA 4 cut(s) 20, 156, 229, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 204
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 2 cut(s) 163, 279
HspAI GCGC 1 cut(s) 64
Kpn2I TCCGGA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 187, 314
LpnPI CCDG 4 cut(s) 15, 105, 285, 312
Lsp1109I GCAGC 2 cut(s) 219, 284
LweI GCATC 3 cut(s) 29, 97, 259
MaeI CTAG 1 cut(s) 126
MaeII ACGT 2 cut(s) 163, 279
MaeIII GTNAC 1 cut(s) 135
MalI GATC 2 cut(s) 189, 316
MboI GATC 2 cut(s) 187, 314
MboII GAAGA 1 cut(s) 193
MnlI CCTC 2 cut(s) 78, 318
Mph1103I ATGCAT 1 cut(s) 22
MroI TCCGGA 1 cut(s) 91
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 26, 204
NdeII GATC 2 cut(s) 187, 314
NmuCI GTSAC 1 cut(s) 135
NsbI TGCGCA 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 22
PctI GAATGC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 209, 274
PpuMI RGGWCCY 1 cut(s) 296
PshAI GACNNNNGTC 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspPI GGNCC 3 cut(s) 94, 167, 296
PspPPI RGGWCCY 1 cut(s) 296
SatI GCNGC 2 cut(s) 208, 273
Sau3AI GATC 2 cut(s) 187, 314
Sau96I GGNCC 3 cut(s) 94, 167, 296
ScrFI CCNGG 1 cut(s) 300
SfaNI GCATC 3 cut(s) 29, 97, 259
SinI GGWCC 3 cut(s) 94, 167, 296
SspI AATATT 1 cut(s) 115
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 298
TaiI ACGT 2 cut(s) 166, 282
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 2 cut(s) 207, 272
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 3 cut(s) 194, 234, 263
VpaK11BI GGWCC 3 cut(s) 94, 167, 296
XagI CCTNNNNNAGG 1 cut(s) 82
XspI CTAG 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.