FvH4_3g18421

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000268
Physical Location & Seq
Reverse (-)
11769639 .. 11770998
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18421.t1

Sequence Viewer

Length: 564 bp
ATGGATGGACCGCGCGAACCTTCAGCTTTTAAAAAAAGTGACGGTAATGAGATGGAATACAAGGGAGTTCAGTATGATAAGTTGTCTACAGAAGACATTAAAGGGCAGAAATTTAAGACTATGGAGGAGGCCGAGGAAAATCACTTCGTTGAGGTTGGTTTATTCTGCTCAGGGACAAAGAGATGCCGAGCGCATGAAAAACAAGAAAAGGGTTCGCAGGCAAAAGAAAGAGACAAGATTCAATTGTCCATGCTTGTTCAAAGTGAGGGCTTCGGCACATTGCTGCAATTGTCATGCACCCGAGTTCGTCGTGATCTATGTGGTTTTTTGATTGGCAAGTTGGACACAGAGAATTGTCAGATTGAGTTGCATGGTAAGGCTATGGAAGTCAATTCTTCAGACTTCAATTTGATTATGAGTGTGCCCGAAGGAGGATCTGATGTAGACTTGAACGGGTCAATTGATGATCCTGACATGAAACCTCTAGTTGATTATTATGGAGGAACTTCTGGAAATATTCATGTTTCAGACCTCATTAAGAAGCTAGATGGAATAACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

188

Amino Acids

20.8

Weight (kDa)

5.0

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 86, 444
AccII CGCG 2 cut(s) 13, 15
AciI CCGC 1 cut(s) 11
AclWI GGATC 2 cut(s) 442, 461
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 2 cut(s) 6, 381
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 4 cut(s) 242, 260, 406, 451
AluBI AGCT 2 cut(s) 26, 544
AluI AGCT 2 cut(s) 26, 544
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 2 cut(s) 442, 461
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 2 cut(s) 15, 193
AspS9I GGNCC 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 270
BccI CCATC 2 cut(s) 46, 542
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 2 cut(s) 485, 545
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 8
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 1 cut(s) 173
BmuI ACTGGG 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 559
Bse3DI GCAATG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 1 cut(s) 270
Bsh1236I CGCG 2 cut(s) 13, 15
BshFI GGCC 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 3 cut(s) 313, 434, 466
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 182
BspFNI CGCG 2 cut(s) 13, 15
BspPI GGATC 2 cut(s) 442, 461
BsrDI GCAATG 1 cut(s) 278
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 313, 434, 466
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 13, 15
BstHHI GCGC 2 cut(s) 15, 193
BstKTI GATC 3 cut(s) 316, 437, 469
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 3 cut(s) 313, 434, 466
BstSFI CTRYAG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 426
BstUI CGCG 2 cut(s) 13, 15
BstV1I GCAGC 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 2 cut(s) 15, 193
Cfr13I GGNCC 1 cut(s) 8
CviAII CATG 6 cut(s) 194, 250, 294, 371, 475, 521
CviJI RGCY 5 cut(s) 26, 131, 270, 380, 544
CviKI_1 RGCY 5 cut(s) 26, 131, 270, 380, 544
DdeI CTNAG 1 cut(s) 169
DpnI GATC 3 cut(s) 315, 436, 468
DpnII GATC 3 cut(s) 313, 434, 466
DraI TTTAAA 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 8
Eco57I CTGAAG 2 cut(s) 6, 381
Eco88I CYCGRG 1 cut(s) 300
FaeI CATG 6 cut(s) 197, 253, 297, 374, 478, 524
FaqI GGGAC 1 cut(s) 187
FatI CATG 6 cut(s) 193, 249, 293, 370, 474, 520
FblI GTMKAC 2 cut(s) 86, 444
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 2 cut(s) 485, 545
GlaI GCGC 2 cut(s) 14, 192
GluI GCNGC 1 cut(s) 284
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 2 cut(s) 15, 193
Hin1II CATG 6 cut(s) 197, 253, 297, 374, 478, 524
Hin6I GCGC 2 cut(s) 13, 191
HinP1I GCGC 2 cut(s) 13, 191
HinfI GANTC 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 87, 445
Hpy188I TCNGA 4 cut(s) 360, 400, 439, 529
Hpy188III TCNNGA 3 cut(s) 311, 470, 510
Hpy8I GTNNAC 2 cut(s) 87, 445
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 2 cut(s) 30, 422
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 3 cut(s) 286, 297, 370
HpyF3I CTNAG 1 cut(s) 169
Hsp92II CATG 6 cut(s) 197, 253, 297, 374, 478, 524
HspAI GCGC 2 cut(s) 13, 191
Kzo9I GATC 3 cut(s) 313, 434, 466
LpnPI CCDG 4 cut(s) 156, 203, 483, 495
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 1 cut(s) 173
MaeI CTAG 2 cut(s) 485, 545
MaeIII GTNAC 1 cut(s) 38
MalI GATC 3 cut(s) 315, 436, 468
MboI GATC 3 cut(s) 313, 434, 466
MboII GAAGA 2 cut(s) 104, 387
MfeI CAATTG 3 cut(s) 242, 287, 459
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 7 cut(s) 110, 242, 287, 352, 391, 406, 459
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 9 cut(s) 118, 121, 127, 145, 259, 425, 492, 494, 542
MseI TTAA 4 cut(s) 30, 99, 114, 537
MunI CAATTG 3 cut(s) 242, 287, 459
MvnI CGCG 2 cut(s) 13, 15
NdeII GATC 3 cut(s) 313, 434, 466
NlaIII CATG 6 cut(s) 197, 253, 297, 374, 478, 524
NmeAIII GCCGAG 2 cut(s) 157, 212
NmuCI GTSAC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 1 cut(s) 434
SaqAI TTAA 4 cut(s) 30, 99, 114, 537
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 3 cut(s) 313, 434, 466
Sau96I GGNCC 1 cut(s) 8
SduI GDGCHC 1 cut(s) 426
SetI ASST 6 cut(s) 22, 28, 156, 484, 534, 546
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 1 cut(s) 8
Sse9I AATT 7 cut(s) 110, 242, 287, 352, 391, 406, 459
SsiI CCGC 1 cut(s) 11
SspI AATATT 1 cut(s) 517
SspMI CTAG 2 cut(s) 485, 545
TaaI ACNGT 1 cut(s) 44
TasI AATT 7 cut(s) 110, 242, 287, 352, 391, 406, 459
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 4 cut(s) 30, 99, 114, 537
Tru9I TTAA 4 cut(s) 30, 99, 114, 537
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 3 cut(s) 210, 491, 509
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 110
XmiI GTMKAC 2 cut(s) 86, 444
XspI CTAG 2 cut(s) 485, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.