Rw7G019130

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000268
Physical Location & Seq
Forward (+)
20951057 .. 20952352
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019130.1

Sequence Viewer

Length: 495 bp
ATGGAGTATATTGAGTTTGATAAGTTAATACAGGATAAAGCAATTAAGGCTGCCAAGAAAGGAGGTAATGATTTGTTAGAATTTGCTGCCACAACACCAAAGAGGTTTGCCGATATATTACAATATCGAAAAGGCCTTAAGAATGGAGAAAATATATTTATCCCCATCCTGGATCCAGATATTTCCCCAAACCACTGGTTATTCATTGTGATTAAATTAGCGAGAACGGATGTAGAGATATGGAACACTTACCCGAATCTTGCACGCACTATGGCTCGAAATGATCTTGTTTATTATGTGCTTTTGGCATTGGACACTATATTTGACAGTGAAATCCAAAGCTGTTTCAAGAAAAGATGGTCGTTTTGTTCATTCACAGTTTTCAATGTAGATGACATTGACATTCAACAAAACAACTTCGATTGTGGCATTTTCATGCTCAGATACATAACAAACTATGATAATCCGTTGAAAGATGAGGACAATCAGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

164

Amino Acids

19.21

Weight (kDa)

4.89

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 46 - 151 4.1e-09 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 167, 180
AcsI RAATTY 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 169
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 4 cut(s) 349, 385, 407, 472
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
AlwI GGATC 2 cut(s) 167, 180
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 2 cut(s) 50, 86
ApoI RAATTY 1 cut(s) 80
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
BamHI GGATCC 1 cut(s) 172
BbvI GCAGC 2 cut(s) 37, 73
BccI CCATC 2 cut(s) 173, 351
BciT130I CCWGG 1 cut(s) 170
BfrI CTTAAG 1 cut(s) 137
BisI GCNGC 2 cut(s) 51, 87
BlsI GCNGC 2 cut(s) 52, 88
Bme1390I CCNGG 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 165, 235
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 37, 73
BshFI GGCC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 172, 283
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 2 cut(s) 167, 180
BspTI CTTAAG 1 cut(s) 137
BsrI ACTGG 1 cut(s) 200
BssMI GATC 2 cut(s) 172, 283
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 329, 379
BstAFI CTTAAG 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 440
BstF5I GGATG 2 cut(s) 165, 235
BstKTI GATC 2 cut(s) 175, 286
BstMBI GATC 2 cut(s) 172, 283
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 37, 73
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 135
BtsCI GGATG 2 cut(s) 165, 235
BtsIMutI CAGTG 3 cut(s) 193, 334, 494
Cac8I GCNNGC 1 cut(s) 265
CviAII CATG 1 cut(s) 436
CviJI RGCY 4 cut(s) 50, 135, 275, 342
CviKI_1 RGCY 4 cut(s) 50, 135, 275, 342
DdeI CTNAG 1 cut(s) 440
DpnI GATC 2 cut(s) 174, 285
DpnII GATC 2 cut(s) 172, 283
Eco147I AGGCCT 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 439
FatI CATG 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 51, 87
FokI GGATG 2 cut(s) 152, 242
Fsp4HI GCNGC 2 cut(s) 51, 87
GluI GCNGC 2 cut(s) 51, 87
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 1 cut(s) 439
HinfI GANTC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 2 cut(s) 176, 349
HpyCH4III ACNGT 2 cut(s) 329, 379
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 440
Hsp92II CATG 1 cut(s) 439
Kzo9I GATC 2 cut(s) 172, 283
LpnPI CCDG 5 cut(s) 17, 155, 181, 182, 189
Lsp1109I GCAGC 2 cut(s) 37, 73
MalI GATC 2 cut(s) 174, 285
MboI GATC 2 cut(s) 172, 283
MflI RGATCY 1 cut(s) 172
MluCI AATT 3 cut(s) 42, 80, 215
MnlI CCTC 3 cut(s) 56, 96, 472
MseI TTAA 4 cut(s) 26, 45, 138, 213
MslI CAYNNNNRTG 1 cut(s) 434
MspCI CTTAAG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 2 cut(s) 172, 283
NlaIII CATG 1 cut(s) 439
NlaIV GGNNCC 1 cut(s) 174
PceI AGGCCT 1 cut(s) 135
PfeI GAWTC 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 2 cut(s) 52, 88
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 174
PsuI RGATCY 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 4 cut(s) 26, 45, 138, 213
SatI GCNGC 2 cut(s) 51, 87
Sau3AI GATC 2 cut(s) 172, 283
ScrFI CCNGG 1 cut(s) 170
SetI ASST 3 cut(s) 67, 107, 344
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 3 cut(s) 42, 80, 215
SseBI AGGCCT 1 cut(s) 135
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 329, 379
TaqI TCGA 3 cut(s) 127, 277, 420
TasI AATT 3 cut(s) 42, 80, 215
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 4 cut(s) 26, 45, 138, 213
Tru9I TTAA 4 cut(s) 26, 45, 138, 213
TscAI CASTG 3 cut(s) 200, 334, 494
TseI GCWGC 2 cut(s) 50, 86
TspDTI ATGAA 3 cut(s) 193, 360, 424
TspGWI ACGGA 2 cut(s) 242, 456
TspRI CASTG 3 cut(s) 200, 334, 494
Vha464I CTTAAG 1 cut(s) 137
XapI RAATTY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.