Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000268

Physical Location & Seq

Genomic Coordinates Reverse (-)

1820207 .. 1825975

Gene Structure 5769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031078

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTGTGGTACGACCTTGGAGAAGAGCAGAAGCATAACGATGGAGGAGGCGAGAGTGATGACGCCACCGGGGAGGGTACCGCTGTAGAAATCTTCATTGATTTTAGGGTTTGTTTTATTGTTTTCCAAACAGATGATAACTTCCTAAACCGTTCTGATATAAAATGCTTACAGCCTGGTCAATATACCAAAGCACTTTCTAAAAAAGAAGGTGAAGACCTGTCAACATTTGCTGCCAAAGCGAAAAAGGAAAGCAAGGTTGAGTTCTGGTATTTTGTATTTGAGAAATGCGAAAAGATTTTTATTCCCATCCTAGATAAAATTGCAAAAGTGAACCACTGGTTCCTGATGCTGAATACACTGGATATGATATTTGATAATGAGATTATGATTCATTTCGATGAAGGATGCACATTCTCTTCATTTAAAATTTGTCATCCTGATTGTGTTCCAATACAACAAAATGGATTCGACTGTGGCATTTATATGCTAAAATTCATGGAGGATTATGAGAATGCATCCAAAGCAGGGGACAAGTATCATTCTGTGAATGAGCGTCTGCGCATAGCTCTCTCCTTGTTAAAGCATCCGGACAACCAAGCACGCAAAAATATTGCTGAAGCTAGACAAAGGCCACTACAAAAAGTTCTATGCAAGAAACGTGGACCACAGACGATGAAGACAAATGAGGACAGAGTAGCACATAGCGACACCGATGAAGAGTTCAATGGAAATAAACTTGATCTTGGAATTGTGGAATTGCTTGGTACTTTCCCTCTTGCAAAGCTTAGCTGGGATCGTGGCAGTCTCGATGATTTGGATGCAAGGAAACCTGACCCACCACCTGGTACAAGTGCAATAAAAGGCAAAAGAAGAGCAACTAATTATGGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006282 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0009790 GO:0009792 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0016787 GO:0016926 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:1904331 GO:1904333 GO:2000112 GO:2000278 GO:2000573 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

299

Amino Acids

34.01

Weight (kDa)

5.6

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica	Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata	RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora	Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii	Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa	Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha	Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana	Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	563
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	845
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	804
AcsI	RAATTY	2 cut(s)	429, 494
AcuI	CTGAAG	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	4 cut(s)	11, 79, 769, 850
AfiI	CCNNNNNNNGG	2 cut(s)	528, 845
AgsI	TTSAA	1 cut(s)	727
AjnI	CCWGG	2 cut(s)	175, 844
AluBI	AGCT	4 cut(s)	569, 623, 787, 792
AluI	AGCT	4 cut(s)	569, 623, 787, 792
Alw26I	GTCTC	1 cut(s)	812
AlwI	GGATC	1 cut(s)	804
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	1 cut(s)	632
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	2 cut(s)	429, 494
Asp718I	GGTACC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	665
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	665
BaeI	ACNNNNGTAYC	2 cut(s)	69, 102
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	222, 686
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	2 cut(s)	35, 317
BciT130I	CCWGG	2 cut(s)	177, 846
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	812
BfaI	CTAG	2 cut(s)	314, 624
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	234
BlpI	GCTNAGC	1 cut(s)	788
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	3 cut(s)	70, 177, 846
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmiI	GGNNCC	2 cut(s)	79, 344
BmrFI	CCNGG	3 cut(s)	70, 177, 846
BmsI	GCATC	5 cut(s)	339, 398, 527, 595, 811
BpiI	GAAGAC	2 cut(s)	222, 686
Bpu1102I	GCTNAGC	1 cut(s)	788
BpuMI	CCSGG	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	16, 69
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 845
Bse1I	ACTGG	2 cut(s)	344, 366
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	177, 846
BseDI	CCNNGG	2 cut(s)	16, 69
BseGI	GGATG	6 cut(s)	309, 413, 436, 518, 586, 826
BseLI	CCNNNNNNNGG	2 cut(s)	528, 845
BseNI	ACTGG	2 cut(s)	344, 366
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	792
BshFI	GGCC	1 cut(s)	634
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	69, 590
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	2 cut(s)	528, 845
BsmAI	GTCTC	1 cut(s)	812
BsmFI	GGGAC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	634
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	2 cut(s)	742, 796
Bsp1720I	GCTNAGC	1 cut(s)	788
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	634
BspEI	TCCGGA	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	79, 344
BspPI	GGATC	1 cut(s)	804
BspQI	GCTCTTC	2 cut(s)	18, 868
BspT107I	GGYRCC	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	344, 366
BssECI	CCNNGG	2 cut(s)	16, 69
BssMI	GATC	2 cut(s)	742, 796
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	177, 846
Bst4CI	ACNGT	2 cut(s)	152, 476
Bst6I	CTCTTC	4 cut(s)	18, 424, 714, 868
BstACI	GRCGYC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	604
BstDEI	CTNAG	1 cut(s)	788
BstF5I	GGATG	6 cut(s)	309, 413, 436, 518, 586, 826
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	2 cut(s)	745, 799
BstMAI	GTCTC	1 cut(s)	812
BstMBI	GATC	2 cut(s)	742, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 524
BstNI	CCWGG	2 cut(s)	177, 846
BstSCI	CCNGG	3 cut(s)	68, 175, 844
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	2 cut(s)	222, 686
BsuRI	GGCC	1 cut(s)	634
BtsCI	GGATG	6 cut(s)	309, 413, 436, 518, 586, 826
BtsIMutI	CAGTG	2 cut(s)	337, 359
Cac8I	GCNNGC	1 cut(s)	604
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	1 cut(s)	665
CseI	GACGC	2 cut(s)	71, 545
CsiI	ACCWGGT	1 cut(s)	844
Csp6I	GTAC	4 cut(s)	10, 78, 768, 849
CspCI	CAANNNNNGTGG	2 cut(s)	643, 678
CviAII	CATG	1 cut(s)	499
CviJI	RGCY	6 cut(s)	175, 569, 623, 634, 787, 792
CviKI_1	RGCY	6 cut(s)	175, 569, 623, 634, 787, 792
CviQI	GTAC	4 cut(s)	10, 78, 768, 849
DdeI	CTNAG	1 cut(s)	788
DpnI	GATC	2 cut(s)	744, 798
DpnII	GATC	2 cut(s)	742, 796
DraI	TTTAAA	1 cut(s)	427
Eam1104I	CTCTTC	4 cut(s)	18, 424, 714, 868
EarI	CTCTTC	4 cut(s)	18, 424, 714, 868
Eco130I	CCWWGG	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	1 cut(s)	639
EcoRII	CCWGG	2 cut(s)	175, 844
EcoT14I	CCWWGG	1 cut(s)	16
EcoT22I	ATGCAT	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	502
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	6 cut(s)	296, 420, 423, 505, 573, 833
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	314, 624
FspI	TGCGCA	1 cut(s)	563
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	1 cut(s)	234
GsaI	CCCAGC	1 cut(s)	796
HaeIII	GGCC	1 cut(s)	634
HapII	CCGG	2 cut(s)	69, 590
HgaI	GACGC	2 cut(s)	71, 545
HhaI	GCGC	1 cut(s)	564
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	502
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	2 cut(s)	391, 468
HpaII	CCGG	2 cut(s)	69, 590
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	3 cut(s)	225, 334, 665
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	4 cut(s)	346, 440, 590, 809
Hpy8I	GTNNAC	3 cut(s)	225, 334, 665
HpyAV	CCTTC	2 cut(s)	203, 398
HpyCH4III	ACNGT	2 cut(s)	152, 476
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	7 cut(s)	326, 411, 518, 654, 782, 824, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 524
HpyF3I	CTNAG	1 cut(s)	788
HpySE526I	ACGT	1 cut(s)	661
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	502
HspAI	GCGC	1 cut(s)	562
Kpn2I	TCCGGA	1 cut(s)	589
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	742, 796
LguI	GCTCTTC	2 cut(s)	18, 868
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	5 cut(s)	339, 398, 527, 595, 811
MabI	ACCWGGT	1 cut(s)	844
MaeI	CTAG	2 cut(s)	314, 624
MaeII	ACGT	1 cut(s)	661
MalI	GATC	2 cut(s)	744, 798
MboI	GATC	2 cut(s)	742, 796
MboII	GAAGA	7 cut(s)	35, 85, 227, 411, 691, 731, 885
MluCI	AATT	6 cut(s)	321, 429, 494, 750, 758, 883
MnlI	CCTC	6 cut(s)	38, 41, 67, 496, 682, 786
Mph1103I	ATGCAT	1 cut(s)	520
MroI	TCCGGA	1 cut(s)	589
MseI	TTAA	2 cut(s)	426, 581
MslI	CAYNNNNRTG	3 cut(s)	39, 399, 485
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	2 cut(s)	69, 590
MspR9I	CCNGG	3 cut(s)	70, 177, 846
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	2 cut(s)	177, 846
MwoI	GCNNNNNNNGC	2 cut(s)	239, 524
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	2 cut(s)	742, 796
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	2 cut(s)	79, 344
NsbI	TGCGCA	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	520
PciSI	GCTCTTC	2 cut(s)	18, 868
PctI	GAATGC	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	391, 468
PflMI	CCANNNNNTGG	1 cut(s)	845
PkrI	GCNGC	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	175, 844
PspFI	CCCAGC	1 cut(s)	792
PspGI	CCWGG	2 cut(s)	175, 844
PspN4I	GGNNCC	2 cut(s)	79, 344
PspPI	GGNCC	1 cut(s)	665
RsaI	GTAC	4 cut(s)	11, 79, 769, 850
RsaNI	GTAC	4 cut(s)	10, 78, 768, 849
RseI	CAYNNNNRTG	3 cut(s)	39, 399, 485
SapI	GCTCTTC	2 cut(s)	18, 868
SaqAI	TTAA	2 cut(s)	426, 581
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	742, 796
Sau96I	GGNCC	1 cut(s)	665
ScrFI	CCNGG	3 cut(s)	70, 177, 846
SexAI	ACCWGGT	1 cut(s)	844
SfaNI	GCATC	5 cut(s)	339, 398, 527, 595, 811
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	3 cut(s)	39, 399, 485
Sse9I	AATT	6 cut(s)	321, 429, 494, 750, 758, 883
SsiI	CCGC	1 cut(s)	81
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	2 cut(s)	314, 624
StyD4I	CCNGG	3 cut(s)	68, 175, 844
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	152, 476
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	3 cut(s)	399, 471, 810
TasI	AATT	6 cut(s)	321, 429, 494, 750, 758, 883
TfiI	GAWTC	2 cut(s)	391, 468
Tru1I	TTAA	2 cut(s)	426, 581
Tru9I	TTAA	2 cut(s)	426, 581
TscAI	CASTG	2 cut(s)	344, 366
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	7 cut(s)	85, 383, 411, 417, 487, 692, 732
TspRI	CASTG	2 cut(s)	344, 366
Van91I	CCANNNNNTGG	1 cut(s)	845
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	2 cut(s)	429, 494
XspI	CTAG	2 cut(s)	314, 624
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.