Rroxscaffold_2G00125800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000268
Physical Location & Seq
Forward (+)
60849047 .. 60850148
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00125800.1

Sequence Viewer

Length: 783 bp
ATGACAACTTCAGAGTCGGCTTCATGTTATTGGCCATTGCTTTATTATTACAACAGTATTGCCCATGGGAGGACAATTATCGATTGTTCAAAGCCTGTGGTTGCTGCCTGGGAAGACGTAAAGTCATCAAAACTACTTAAATGGATCTCGAGGAAAGGAGGTCTTCAGAGTTCTGCTATTAATCTTGTTTCTAACATTGATGGTGTAATGGGAAACAAGAATGGGGTGGAAGATGCGTTTCCAGTGAGAGCAGATGTGGAGCTTTTGAAAAATGTTGTTAGTTGCATTGAGAAATCAGTTGAAGAACTCAAAAATATTGTTGTTAATACTGTCCCTACAAAAGTTGTGGAAGAGCTGAGGGGATTAAAAGAATTTTTGAAGTCATTAAAGGTGGGCGTCAATGATGGTGTGGAAAAGGAAGGAGAAGATATTGAACAGAAAAACGGAGACACGTTTGCAAATCAGAAACATTATCGACACATGCAGAGCCCAGATAGATCATCTTGCCAAATGCTCAGCCCCCACAATCGGCCACAATACACAGAGGCTAACGAACCCCAAGTCGGTATTAAAAACATTAAGAAAGAGATTTCATCGCCTGAACTCAGTCCGGATCTCCTTTTGGAGTACGGTGATAAAATAGAACGTCTAACTGCACAACTTTTACATGAAAAGCCGAGAAAAATACAAGATATTGGTCCTTTTAAAGGGTGTCGTGACCTTTCCAATGAAGAAGTAGATCTAATAGCTTTCATATATCTCAAAGTCTGGAATGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.33

Weight (kDa)

5.69

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 610
AclWI GGATC 2 cut(s) 152, 621
AcoI YGGCCR 2 cut(s) 32, 530
AcsI RAATTY 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 4 cut(s) 69, 528, 563, 707
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 5 cut(s) 90, 268, 302, 379, 434
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 3 cut(s) 262, 355, 749
AluI AGCT 3 cut(s) 262, 355, 749
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 2 cut(s) 152, 621
Ama87I CYCGRG 1 cut(s) 148
Aor13HI TCCGGA 1 cut(s) 610
AoxI GGCC 2 cut(s) 32, 530
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 371
ArsI GACNNNNNNTTYG 2 cut(s) 546, 578
AseI ATTAAT 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 698
AsuHPI GGTGA 1 cut(s) 644
AvaI CYCGRG 1 cut(s) 148
AvaII GGWCC 1 cut(s) 698
BalI TGGCCA 1 cut(s) 34
BanII GRGCYC 1 cut(s) 491
BbsI GAAGAC 2 cut(s) 120, 155
BbvCI CCTCAGC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 91
BccI CCATC 2 cut(s) 194, 398
BciT130I CCWGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 441
BglII AGATCT 1 cut(s) 739
BisI GCNGC 1 cut(s) 105
BlpI GCTNAGC 1 cut(s) 515
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 698
BmeRI GACNNNNNGTC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 698
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 2 cut(s) 120, 155
Bpu10I CCTNAGC 1 cut(s) 356
Bpu1102I GCTNAGC 1 cut(s) 515
Bsa29I ATCGAT 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 64, 108
BsaWI WCCGGW 1 cut(s) 610
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 528, 563, 707
Bse1I ACTGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 35
BseAI TCCGGA 1 cut(s) 610
BseBI CCWGG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 64, 108
BseLI CCNNNNNNNGG 4 cut(s) 69, 528, 563, 707
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 3 cut(s) 347, 529, 619
BseNI ACTGG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 2 cut(s) 34, 532
BshVI ATCGAT 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 1 cut(s) 611
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 4 cut(s) 69, 528, 563, 707
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 2 cut(s) 34, 532
BsoBI CYCGRG 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 491
Bsp13I TCCGGA 1 cut(s) 610
Bsp143I GATC 4 cut(s) 144, 497, 613, 739
Bsp1720I GCTNAGC 1 cut(s) 515
Bsp19I CCATGG 1 cut(s) 64
BspANI GGCC 2 cut(s) 34, 532
BspCNI CTCAG 3 cut(s) 348, 528, 618
BspDI ATCGAT 1 cut(s) 81
BspEI TCCGGA 1 cut(s) 610
BspPI GGATC 2 cut(s) 152, 621
BspQI GCTCTTC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 35
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 64, 108
BssMI GATC 4 cut(s) 144, 497, 613, 739
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 3 cut(s) 56, 331, 632
Bst6I CTCTTC 2 cut(s) 345, 771
BstACI GRCGYC 1 cut(s) 396
BstDEI CTNAG 3 cut(s) 356, 515, 605
BstDSI CCRYGG 1 cut(s) 64
BstENI CCTNNNNNAGG 1 cut(s) 705
BstKTI GATC 4 cut(s) 147, 500, 616, 742
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 4 cut(s) 144, 497, 613, 739
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 2 cut(s) 120, 155
BstX2I RGATCY 3 cut(s) 144, 613, 739
BstYI RGATCY 3 cut(s) 144, 613, 739
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 2 cut(s) 34, 532
BsuTUI ATCGAT 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 64
BtgZI GCGATG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 698
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 628
CspCI CAANNNNNGTGG 4 cut(s) 78, 113, 327, 362
CviAII CATG 4 cut(s) 24, 65, 481, 668
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 3 cut(s) 356, 515, 605
DpnI GATC 4 cut(s) 146, 499, 615, 741
DpnII GATC 4 cut(s) 144, 497, 613, 739
DraI TTTAAA 1 cut(s) 706
DriI GACNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 2 cut(s) 32, 530
Eam1104I CTCTTC 2 cut(s) 345, 771
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 2 cut(s) 345, 771
Eco130I CCWWGG 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 698
Eco57I CTGAAG 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 705
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 4 cut(s) 27, 68, 484, 671
FaiI YATR 6 cut(s) 25, 66, 482, 669, 755, 757
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 1 cut(s) 317
FatI CATG 4 cut(s) 23, 64, 480, 667
Fnu4HI GCNGC 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 2 cut(s) 34, 532
HapII CCGG 1 cut(s) 611
HgaI GACGC 1 cut(s) 385
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 4 cut(s) 27, 68, 484, 671
HinfI GANTC 1 cut(s) 14
HpaII CCGG 1 cut(s) 611
HphI GGTGA 1 cut(s) 644
Hpy188I TCNGA 3 cut(s) 13, 168, 465
Hpy188III TCNNGA 4 cut(s) 148, 611, 716, 769
HpyAV CCTTC 1 cut(s) 413
HpyCH4III ACNGT 3 cut(s) 56, 331, 632
HpyCH4IV ACGT 3 cut(s) 117, 452, 646
HpyCH4V TGCA 4 cut(s) 285, 458, 484, 656
HpyF3I CTNAG 3 cut(s) 356, 515, 605
HpySE526I ACGT 3 cut(s) 117, 452, 646
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 4 cut(s) 27, 68, 484, 671
Kpn2I TCCGGA 1 cut(s) 610
Kzo9I GATC 4 cut(s) 144, 497, 613, 739
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 8 cut(s) 94, 108, 121, 255, 504, 612, 624, 754
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 223
MaeII ACGT 3 cut(s) 117, 452, 646
MaeIII GTNAC 1 cut(s) 716
MalI GATC 4 cut(s) 146, 499, 615, 741
MboI GATC 4 cut(s) 144, 497, 613, 739
MboII GAAGA 7 cut(s) 125, 155, 242, 314, 362, 437, 743
MflI RGATCY 3 cut(s) 144, 613, 739
MhlI GDGCHC 1 cut(s) 491
MlsI TGGCCA 1 cut(s) 34
MluCI AATT 2 cut(s) 75, 371
MluNI TGGCCA 1 cut(s) 34
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 5 cut(s) 63, 144, 152, 351, 538
Mox20I TGGCCA 1 cut(s) 34
MroI TCCGGA 1 cut(s) 610
MscI TGGCCA 1 cut(s) 34
MseI TTAA 8 cut(s) 138, 180, 324, 365, 386, 570, 579, 705
Msp20I TGGCCA 1 cut(s) 34
MspI CCGG 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
NcoI CCATGG 1 cut(s) 64
NdeII GATC 4 cut(s) 144, 497, 613, 739
NlaIII CATG 4 cut(s) 27, 68, 484, 671
NmeAIII GCCGAG 1 cut(s) 702
NmuCI GTSAC 1 cut(s) 716
NspI RCATGY 1 cut(s) 484
PaeR7I CTCGAG 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 345
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspPI GGNCC 1 cut(s) 698
PsuI RGATCY 3 cut(s) 144, 613, 739
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 8 cut(s) 138, 180, 324, 365, 386, 570, 579, 705
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 4 cut(s) 144, 497, 613, 739
Sau96I GGNCC 1 cut(s) 698
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 491
SetI ASST 9 cut(s) 120, 163, 264, 357, 393, 455, 649, 723, 751
SfaNI GCATC 1 cut(s) 223
Sfr274I CTCGAG 1 cut(s) 148
SinI GGWCC 1 cut(s) 698
SlaI CTCGAG 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 2 cut(s) 75, 371
SspI AATATT 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 3 cut(s) 56, 331, 632
TaiI ACGT 3 cut(s) 120, 455, 649
TaqI TCGA 3 cut(s) 81, 149, 475
TasI AATT 2 cut(s) 75, 371
Tru1I TTAA 8 cut(s) 138, 180, 324, 365, 386, 570, 579, 705
Tru9I TTAA 8 cut(s) 138, 180, 324, 365, 386, 570, 579, 705
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 5 cut(s) 12, 582, 684, 742, 744
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 698
VspI ATTAAT 1 cut(s) 180
XagI CCTNNNNNAGG 1 cut(s) 705
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 484
XhoI CTCGAG 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.