Rroxscaffold_6G00390520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000268
Physical Location & Seq
Reverse (-)
5723940 .. 5724490
551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390520.1

Sequence Viewer

Length: 288 bp
ATGGAAGAATTTGAAGAATATAAGAAGTATGAACTGGTGGACAAAAACATGAGGCGAGAAGATGTTGTTGCCCTCCGAACTAATGTTGAATCTGTGAAGAATACCATTATGAGCGTGGAAGAAAAGATCGATGAACCGAGAGGTCTTCTTAGAGAGATAAAAGAAGGATTGTTCAAAGTAGTGAGACAAGATGGTGATCGGGATGTCAATATAAAAAGGGACGAGGCTAATCATGAAAGGAAGACAATGGAACTGTCATCAAATGACACTATTGGGCAAAACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.27

Weight (kDa)

5.13

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 8
AgsI TTSAA 3 cut(s) 14, 89, 175
Alw26I GTCTC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 137, 248
BccI CCATC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 178
BpiI GAAGAC 2 cut(s) 137, 248
Bsa29I ATCGAT 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 195
BseCI ATCGAT 1 cut(s) 129
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 195
BseNI ACTGG 1 cut(s) 39
BshVI ATCGAT 1 cut(s) 129
BslFI GGGAC 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 126, 196
BspDI ATCGAT 1 cut(s) 129
BspHI TCATGA 1 cut(s) 232
BsrI ACTGG 1 cut(s) 39
BssMI GATC 2 cut(s) 126, 196
Bst4CI ACNGT 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 2 cut(s) 129, 199
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 2 cut(s) 126, 196
BstV2I GAAGAC 2 cut(s) 137, 248
Bsu15I ATCGAT 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 1 cut(s) 208
CciI TCATGA 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 129
CviAII CATG 2 cut(s) 49, 233
CviJI RGCY 1 cut(s) 227
CviKI_1 RGCY 1 cut(s) 227
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 128, 198
DpnII GATC 2 cut(s) 126, 196
FaeI CATG 2 cut(s) 52, 236
FaiI YATR 6 cut(s) 21, 30, 50, 110, 212, 234
FaqI GGGAC 1 cut(s) 233
FatI CATG 2 cut(s) 48, 232
FokI GGATG 1 cut(s) 215
Hin1II CATG 2 cut(s) 52, 236
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 200, 233
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 255
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 2 cut(s) 52, 236
Kzo9I GATC 2 cut(s) 126, 196
LpnPI CCDG 1 cut(s) 20
MalI GATC 2 cut(s) 128, 198
MboI GATC 2 cut(s) 126, 196
MboII GAAGA 7 cut(s) 17, 26, 71, 109, 131, 137, 253
MluCI AATT 1 cut(s) 8
MnlI CCTC 4 cut(s) 45, 83, 134, 217
NdeII GATC 2 cut(s) 126, 196
NlaIII CATG 2 cut(s) 52, 236
PagI TCATGA 1 cut(s) 232
PfeI GAWTC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 126, 196
SetI ASST 1 cut(s) 145
SgeI CNNG 9 cut(s) 47, 61, 68, 127, 150, 200, 212, 235, 245
Sse9I AATT 1 cut(s) 8
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 8
TfiI GAWTC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 45, 147, 249
XapI RAATTY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.