Rorug06G0026400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000268
Physical Location & Seq
Reverse (-)
3212753 .. 3213250
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0026400.1

Sequence Viewer

Length: 498 bp
ATGTCTGCGTCCCATTACCACTGGTACACATCGGAGTTCGCCGACCCACCTCAAATCCTCCACGTATACGACACCGTTTTCCATGGCTTCTCTGCAACTCTCACCTCCGACCAAGTTGCCTCCCTCAGCCAACACCCTGCCGTTCTCCACGTCTTAGAAGATCGCCGCCGCCAGATCCACACCACCCGCTCGCCGCAGTTCCTGAGCCTGAGAAACCAGAAGGGGTTGTGGTCGGAATCAGACTACAGCTCCGACGTCATCGTCGGGGTTTTCGATACTGGAGTTTGGCCGGAGCGTCGGAGCTTTTCCGATACGAATCTCGGTCCGGTTCCGAAGCGGTGGAGAACAATTGGGCCTCGACGAAGAAGCCTATACAGTCAATCGATTCCGGTCGACGAGCTTCCTGGGTGCCCAAATCATTTTTTTTTCATTGTTTGTTTACAATTCAGCTTGTGTTGTATATGTGTTGGCAATAATACGATTATTGGGGGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

165

Amino Acids

18.78

Weight (kDa)

7.11

Isoelectric Point (pI)

68.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 4 - 60 1.5e-12 Peptidase inhibitor I9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AatII GACGTC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 408
AccBSI CCGCTC 1 cut(s) 189
AccI GTMKAC 2 cut(s) 66, 393
AciI CCGC 5 cut(s) 166, 169, 187, 194, 337
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 1 cut(s) 26
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 4 cut(s) 249, 303, 400, 450
AluI AGCT 4 cut(s) 249, 303, 400, 450
AlwI GGATC 1 cut(s) 169
AlwNI CAGNNNCTG 1 cut(s) 202
AoxI GGCC 2 cut(s) 287, 353
AspS9I GGNCC 2 cut(s) 323, 353
AsuHPI GGTGA 1 cut(s) 94
AvaII GGWCC 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 413
BaeI ACNNNNGTAYC 2 cut(s) 267, 300
BanI GGYRCC 1 cut(s) 408
BbvCI CCTCAGC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 244
BisI GCNGC 3 cut(s) 166, 169, 194
BlsI GCNGC 3 cut(s) 167, 170, 195
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 323
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 323, 353
BmiI GGNNCC 2 cut(s) 330, 410
BmrFI CCNGG 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 2 cut(s) 125, 203
Bsa29I ATCGAT 1 cut(s) 383
BsaAI YACGTR 1 cut(s) 64
BsaBI GATNNNNATC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 82, 404
BsaWI WCCGGW 2 cut(s) 325, 388
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bse1I ACTGG 2 cut(s) 26, 283
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 1 cut(s) 405
BseCI ATCGAT 1 cut(s) 383
BseDI CCNNGG 2 cut(s) 82, 404
BseJI GATNNNNATC 1 cut(s) 315
BseMII CTCAG 3 cut(s) 139, 194, 200
BseNI ACTGG 2 cut(s) 26, 283
BseSI GKGCMC 1 cut(s) 413
Bsh1285I CGRYCG 1 cut(s) 393
BshFI GGCC 2 cut(s) 289, 355
BshNI GGYRCC 1 cut(s) 408
BshVI ATCGAT 1 cut(s) 383
BsiEI CGRYCG 1 cut(s) 393
BsiSI CCGG 3 cut(s) 290, 326, 389
BsnI GGCC 2 cut(s) 289, 355
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 2 cut(s) 160, 174
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 5 cut(s) 166, 169, 187, 194, 337
BspANI GGCC 2 cut(s) 289, 355
BspCNI CTCAG 3 cut(s) 138, 195, 201
BspDI ATCGAT 1 cut(s) 383
BspLI GGNNCC 2 cut(s) 330, 410
BspPI GGATC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 408
BsrBI CCGCTC 1 cut(s) 189
BsrI ACTGG 2 cut(s) 26, 283
BssECI CCNNGG 2 cut(s) 82, 404
BssMI GATC 2 cut(s) 160, 174
BssNAI GTATAC 1 cut(s) 67
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 82
Bst1107I GTATAC 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 2 cut(s) 76, 377
BstACI GRCGYC 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 4 cut(s) 125, 154, 203, 209
BstDSI CCRYGG 1 cut(s) 82
BstKTI GATC 2 cut(s) 163, 177
BstMBI GATC 2 cut(s) 160, 174
BstMCI CGRYCG 1 cut(s) 393
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BstZ17I GTATAC 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 383
BsuRI GGCC 2 cut(s) 289, 355
BsuTUI ATCGAT 1 cut(s) 383
BtgI CCRYGG 1 cut(s) 82
BtrI CACGTC 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 191
CaiI CAGNNNCTG 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 323, 353
ClaI ATCGAT 1 cut(s) 383
CpoI CGGWCCG 1 cut(s) 323
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 25
CspI CGGWCCG 1 cut(s) 323
CviAII CATG 1 cut(s) 83
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 4 cut(s) 125, 154, 203, 209
DpnI GATC 2 cut(s) 162, 176
DpnII GATC 2 cut(s) 160, 174
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 86
FaiI YATR 5 cut(s) 67, 84, 373, 461, 463
FatI CATG 1 cut(s) 82
FauI CCCGC 1 cut(s) 194
FblI GTMKAC 2 cut(s) 66, 393
Fnu4HI GCNGC 3 cut(s) 166, 169, 194
Fsp4HI GCNGC 3 cut(s) 166, 169, 194
GluI GCNGC 3 cut(s) 166, 169, 194
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 2 cut(s) 289, 355
HapII CCGG 3 cut(s) 290, 326, 389
HgaI GACGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 1 cut(s) 86
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 3 cut(s) 236, 316, 385
HpaII CCGG 3 cut(s) 290, 326, 389
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 4 cut(s) 27, 67, 394, 440
Hpy188I TCNGA 8 cut(s) 34, 109, 235, 241, 253, 300, 310, 333
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 4 cut(s) 27, 67, 394, 440
Hpy99I CGWCG 5 cut(s) 257, 266, 300, 363, 398
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 2 cut(s) 76, 377
HpyCH4IV ACGT 3 cut(s) 63, 150, 255
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 4 cut(s) 125, 154, 203, 209
HpySE526I ACGT 3 cut(s) 63, 150, 255
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 2 cut(s) 160, 174
LmnI GCTCC 3 cut(s) 254, 292, 300
MaeII ACGT 3 cut(s) 63, 150, 255
MalI GATC 2 cut(s) 162, 176
MbiI CCGCTC 1 cut(s) 189
MboI GATC 2 cut(s) 160, 174
MboII GAAGA 2 cut(s) 170, 375
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 2 cut(s) 348, 443
MmeI TCCRAC 4 cut(s) 132, 213, 276, 278
MnlI CCTC 6 cut(s) 60, 68, 115, 130, 134, 366
MseI TTAA 1 cut(s) 496
MspI CCGG 3 cut(s) 290, 326, 389
MspR9I CCNGG 1 cut(s) 405
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 405
NcoI CCATGG 1 cut(s) 82
NdeII GATC 2 cut(s) 160, 174
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 2 cut(s) 330, 410
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 3 cut(s) 236, 316, 385
PkrI GCNGC 3 cut(s) 167, 170, 195
Ppu21I YACGTR 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 330, 410
PspPI GGNCC 2 cut(s) 323, 353
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
Rsr2I CGGWCCG 1 cut(s) 323
RsrII CGGWCCG 1 cut(s) 323
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 3 cut(s) 166, 169, 194
Sau3AI GATC 2 cut(s) 160, 174
Sau96I GGNCC 2 cut(s) 323, 353
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 1 cut(s) 413
SetI ASST 9 cut(s) 52, 66, 107, 153, 251, 258, 305, 402, 452
SfcI CTRYAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 323
Sse9I AATT 2 cut(s) 348, 443
SsiI CCGC 5 cut(s) 166, 169, 187, 194, 337
StyD4I CCNGG 1 cut(s) 403
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 76, 377
TaiI ACGT 3 cut(s) 66, 153, 258
TaqI TCGA 4 cut(s) 273, 358, 383, 393
TaqII GACCGA 1 cut(s) 311
TasI AATT 2 cut(s) 348, 443
TauI GCSGC 3 cut(s) 168, 171, 196
TfiI GAWTC 3 cut(s) 236, 316, 385
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TscAI CASTG 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 418
TspRI CASTG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 323
XmiI GTMKAC 2 cut(s) 66, 393
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.