Rorug06G0005500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000268
Physical Location & Seq
Forward (+)
718046 .. 719029
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0005500.1

Sequence Viewer

Length: 984 bp
ATGGCCGAAATCCAAAGCTCACCAGATCTGCCATGGACCGTCCGCCTCTTCGTCTCCGCCGCTTCCTTCGCAGCCGACGCCTCTCGCCGCTCAAACCTCACCATCAATCGTCGCCTCTTTAACTTGTTCGACTACAAACCATCTCCCTTAACAAAACCTCACAAAAACCTCAAGAGCTCCGATGTCGTCGTCGCCGCTGACCCTTCCCGCAACCTCTGGTTCCGCCTTTACACTCCCACCGCTGCTACCACCAAGCTCCCCATCATTGTCTTCTTCCACAGCGGCGGGTTCGCCTTCATGTCCGCCGCTTCAAAACCCTACGACGACTTCTATCAATGCCTCGCTCGCGAGATCCCCGCCTTCGTCGTCTCCGTCAACTACCGCCTCGCGCCGGAGCAACGGTATCCGTGCCAGTATGACGACGGTTTCAACGTCCTCAAGTTCATCGACGACAGTCAAAGCAGCTTGTTCGAGGGCGCGAATCTCGGGCAGTGTTTTCTGGCCGGGGACAGCTCCGGCGGGAACATAGGGCACCATGTGGCGATCAGAGCGAGCGGGCACAAGTTTCGGGATCTGAAGGTGGTCGGGATCTTGGCGATTCAGCCGTTTTTCAGCGGAGAAGAACGGACCGAATCGGAGAAGAGACTGAAGAGTGTGCCGCTGGTGAACGTAGAGTGGACGGACTGGATGTGGAAGGCGTTTTTGCAGGACGGGTCGGGTCGGGATCATCCGGTGGTGAATGTGTTCGGGCCGAACGCGGTCGATATTTCGGGGGTTGATTTTCCGGCGACGATTGTGGTTGTTGGGGGATTTGATCCGTTGCAGGATTGGCAGAAGAGGTATTACGAGGGATTGAGGGAACGCGGGAAACAAGCGGAGCTGGTGGTGTTTCCAAATGCCATTCATACTTTCTATGCTTATCCTGAGTTGGATGACTCTTCTGCATTTATTAACAAAGTCAGGGATTTCGTGCAATTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

327

Amino Acids

36.74

Weight (kDa)

6.39

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 75 - 130 4.8e-06 Carboxylesterase family
BD-FAE PF20434 76 - 189 2.8e-09 BD-FAE
Abhydrolase_3 PF07859 89 - 305 3.7e-53 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 531
AccBSI CCGCTC 2 cut(s) 90, 555
AccII CGCG 5 cut(s) 348, 389, 479, 758, 864
AclWI GGATC 5 cut(s) 346, 579, 596, 732, 809
AcoI YGGCCR 2 cut(s) 3, 501
AcuI CTGAAG 2 cut(s) 596, 668
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 538
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 2 cut(s) 312, 430
AluBI AGCT 6 cut(s) 18, 177, 256, 465, 513, 880
AluI AGCT 6 cut(s) 18, 177, 256, 465, 513, 880
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 3 cut(s) 58, 373, 637
AlwI GGATC 5 cut(s) 346, 579, 596, 732, 809
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 3 cut(s) 3, 501, 749
ApeKI GCWGC 3 cut(s) 71, 242, 462
Asp700I GAANNNNTTC 1 cut(s) 743
AspLEI GCGC 2 cut(s) 391, 479
AspS9I GGNCC 3 cut(s) 36, 627, 749
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 4 cut(s) 12, 91, 676, 748
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 2 cut(s) 36, 627
BaeGI GKGCMC 2 cut(s) 534, 561
BanI GGYRCC 1 cut(s) 531
BanII GRGCYC 1 cut(s) 179
BarI GAAGNNNNNNTAC 2 cut(s) 827, 859
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 3 cut(s) 83, 229, 474
BccI CCATC 3 cut(s) 110, 148, 269
BceAI ACGGC 1 cut(s) 589
BcgI CGANNNNNNTGC 4 cut(s) 451, 485, 548, 582
BciVI GTATCC 1 cut(s) 414
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 3 cut(s) 58, 373, 637
BfuI GTATCC 1 cut(s) 414
BglII AGATCT 1 cut(s) 25
BisI GCNGC 9 cut(s) 60, 72, 88, 195, 243, 283, 306, 463, 659
BlsI GCNGC 9 cut(s) 61, 73, 89, 196, 244, 284, 307, 464, 660
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 2 cut(s) 36, 627
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 3 cut(s) 36, 627, 749
BmiI GGNNCC 2 cut(s) 221, 533
BmrFI CCNGG 1 cut(s) 505
BoxI GACNNNNGTC 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 262
BpuEI CTTGAG 2 cut(s) 155, 422
BpuMI CCSGG 1 cut(s) 505
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 32, 504
BsaWI WCCGGW 1 cut(s) 730
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse1I ACTGG 2 cut(s) 412, 689
BseDI CCNNGG 2 cut(s) 32, 504
BseGI GGATG 3 cut(s) 693, 727, 937
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 915
BseNI ACTGG 2 cut(s) 412, 689
BseSI GKGCMC 2 cut(s) 534, 561
BseXI GCAGC 3 cut(s) 83, 229, 474
Bsh1236I CGCG 5 cut(s) 348, 389, 479, 758, 864
Bsh1285I CGRYCG 1 cut(s) 762
BshFI GGCC 3 cut(s) 5, 503, 751
BshNI GGYRCC 1 cut(s) 531
BsiEI CGRYCG 1 cut(s) 762
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 5 cut(s) 392, 504, 516, 731, 785
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 3 cut(s) 58, 373, 637
BsmBI CGTCTC 2 cut(s) 58, 373
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 3 cut(s) 5, 503, 751
BsoBI CYCGRG 1 cut(s) 485
Bsp1286I GDGCHC 3 cut(s) 179, 534, 561
Bsp143I GATC 7 cut(s) 25, 351, 543, 571, 588, 724, 814
Bsp19I CCATGG 1 cut(s) 32
Bsp68I TCGCGA 1 cut(s) 348
BspANI GGCC 3 cut(s) 5, 503, 751
BspCNI CTCAG 1 cut(s) 916
BspFNI CGCG 5 cut(s) 348, 389, 479, 758, 864
BspLI GGNNCC 2 cut(s) 221, 533
BspPI GGATC 5 cut(s) 346, 579, 596, 732, 809
BspT107I GGYRCC 1 cut(s) 531
BsrBI CCGCTC 2 cut(s) 90, 555
BsrI ACTGG 2 cut(s) 412, 689
BssECI CCNNGG 2 cut(s) 32, 504
BssMI GATC 7 cut(s) 25, 351, 543, 571, 588, 724, 814
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 4 cut(s) 40, 402, 425, 455
Bst6I CTCTTC 5 cut(s) 53, 635, 644, 830, 943
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 346, 553, 557
BstDEI CTNAG 1 cut(s) 924
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 3 cut(s) 693, 727, 937
BstFNI CGCG 5 cut(s) 348, 389, 479, 758, 864
BstHHI GCGC 2 cut(s) 391, 479
BstKTI GATC 7 cut(s) 28, 354, 546, 574, 591, 727, 817
BstMAI GTCTC 3 cut(s) 58, 373, 637
BstMBI GATC 7 cut(s) 25, 351, 543, 571, 588, 724, 814
BstMCI CGRYCG 1 cut(s) 762
BstMWI GCNNNNNNNGC 5 cut(s) 68, 77, 345, 548, 829
BstPAI GACNNNNGTC 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 503
BstSLI GKGCMC 2 cut(s) 534, 561
BstUI CGCG 5 cut(s) 348, 389, 479, 758, 864
BstV1I GCAGC 3 cut(s) 83, 229, 474
BstV2I GAAGAC 1 cut(s) 262
BstX2I RGATCY 4 cut(s) 25, 351, 571, 588
BstYI RGATCY 4 cut(s) 25, 351, 571, 588
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 3 cut(s) 5, 503, 751
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 3 cut(s) 693, 727, 937
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 1 cut(s) 497
BtuMI TCGCGA 1 cut(s) 348
Cac8I GCNNGC 3 cut(s) 346, 553, 557
CfoI GCGC 2 cut(s) 391, 479
Cfr13I GGNCC 3 cut(s) 36, 627, 749
CpoI CGGWCCG 1 cut(s) 627
CseI GACGC 1 cut(s) 86
CspI CGGWCCG 1 cut(s) 627
CviAII CATG 3 cut(s) 33, 298, 536
DdeI CTNAG 1 cut(s) 924
DpnI GATC 7 cut(s) 27, 353, 545, 573, 590, 726, 816
DpnII GATC 7 cut(s) 25, 351, 543, 571, 588, 724, 814
DraIII CACNNNGTG 1 cut(s) 538
EaeI YGGCCR 2 cut(s) 3, 501
Eam1104I CTCTTC 5 cut(s) 53, 635, 644, 830, 943
EarI CTCTTC 5 cut(s) 53, 635, 644, 830, 943
EciI GGCGGA 4 cut(s) 32, 46, 212, 292
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 36, 627
Eco53kI GAGCTC 1 cut(s) 177
Eco57I CTGAAG 2 cut(s) 596, 668
Eco88I CYCGRG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 2 cut(s) 58, 373
FaeI CATG 3 cut(s) 36, 301, 539
FaiI YATR 7 cut(s) 34, 299, 417, 527, 537, 906, 915
FaqI GGGAC 1 cut(s) 521
FatI CATG 3 cut(s) 32, 297, 535
FauI CCCGC 6 cut(s) 215, 278, 364, 512, 548, 857
Fnu4HI GCNGC 9 cut(s) 60, 72, 88, 195, 243, 283, 306, 463, 659
FokI GGATG 3 cut(s) 700, 714, 944
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 9 cut(s) 60, 72, 88, 195, 243, 283, 306, 463, 659
GlaI GCGC 2 cut(s) 390, 478
GluI GCNGC 9 cut(s) 60, 72, 88, 195, 243, 283, 306, 463, 659
HaeIII GGCC 3 cut(s) 5, 503, 751
HapII CCGG 5 cut(s) 392, 504, 516, 731, 785
HgaI GACGC 1 cut(s) 86
HhaI GCGC 2 cut(s) 391, 479
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 3 cut(s) 36, 301, 539
Hin6I GCGC 2 cut(s) 389, 477
HinP1I GCGC 2 cut(s) 389, 477
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 4 cut(s) 481, 598, 632, 935
HpaII CCGG 5 cut(s) 392, 504, 516, 731, 785
HphI GGTGA 4 cut(s) 12, 91, 676, 748
Hpy166II GTNNAC 3 cut(s) 376, 667, 678
Hpy188I TCNGA 4 cut(s) 181, 548, 576, 637
Hpy188III TCNNGA 6 cut(s) 172, 347, 569, 586, 722, 923
Hpy8I GTNNAC 3 cut(s) 376, 667, 678
Hpy99I CGWCG 9 cut(s) 80, 114, 191, 194, 326, 368, 425, 452, 793
HpyAV CCTTC 6 cut(s) 76, 213, 304, 370, 571, 688
HpyCH4III ACNGT 4 cut(s) 40, 402, 425, 455
HpyCH4IV ACGT 2 cut(s) 432, 669
HpyCH4V TGCA 5 cut(s) 706, 823, 944, 973, 979
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 77, 345, 548, 829
HpyF3I CTNAG 1 cut(s) 924
HpySE526I ACGT 2 cut(s) 432, 669
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 36, 301, 539
HspAI GCGC 2 cut(s) 389, 477
Kzo9I GATC 7 cut(s) 25, 351, 543, 571, 588, 724, 814
LmnI GCTCC 5 cut(s) 182, 261, 394, 518, 877
Lsp1109I GCAGC 3 cut(s) 83, 229, 474
MaeII ACGT 2 cut(s) 432, 669
MalI GATC 7 cut(s) 27, 353, 545, 573, 590, 726, 816
MbiI CCGCTC 2 cut(s) 90, 555
MboI GATC 7 cut(s) 25, 351, 543, 571, 588, 724, 814
MboII GAAGA 8 cut(s) 40, 262, 265, 632, 652, 661, 847, 930
MfeI CAATTG 1 cut(s) 974
MflI RGATCY 4 cut(s) 25, 351, 571, 588
MhlI GDGCHC 3 cut(s) 179, 534, 561
MluCI AATT 1 cut(s) 974
MlyI GAGTC 1 cut(s) 929
MmeI TCCRAC 1 cut(s) 909
MroXI GAANNNNTTC 1 cut(s) 743
MseI TTAA 3 cut(s) 120, 149, 951
MspA1I CMGCKG 5 cut(s) 197, 242, 282, 615, 661
MspI CCGG 5 cut(s) 392, 504, 516, 731, 785
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 974
MvnI CGCG 5 cut(s) 348, 389, 479, 758, 864
MwoI GCNNNNNNNGC 5 cut(s) 68, 77, 345, 548, 829
NciI CCSGG 1 cut(s) 505
NcoI CCATGG 1 cut(s) 32
NdeII GATC 7 cut(s) 25, 351, 543, 571, 588, 724, 814
NlaIII CATG 3 cut(s) 36, 301, 539
NlaIV GGNNCC 2 cut(s) 221, 533
NruI TCGCGA 1 cut(s) 348
PcsI WCGNNNNNNNCGW 2 cut(s) 369, 429
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 3 cut(s) 481, 598, 632
PkrI GCNGC 9 cut(s) 61, 73, 89, 196, 244, 284, 307, 464, 660
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
PshAI GACNNNNGTC 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 221, 533
PspPI GGNCC 3 cut(s) 36, 627, 749
PsuI RGATCY 4 cut(s) 25, 351, 571, 588
RruI TCGCGA 1 cut(s) 348
Rsr2I CGGWCCG 1 cut(s) 627
RsrII CGGWCCG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 3 cut(s) 120, 149, 951
SatI GCNGC 9 cut(s) 60, 72, 88, 195, 243, 283, 306, 463, 659
Sau3AI GATC 7 cut(s) 25, 351, 543, 571, 588, 724, 814
Sau96I GGNCC 3 cut(s) 36, 627, 749
SchI GAGTC 1 cut(s) 929
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 3 cut(s) 179, 534, 561
SinI GGWCC 2 cut(s) 36, 627
SmlI CTYRAG 2 cut(s) 170, 437
SmoI CTYRAG 2 cut(s) 170, 437
Sse9I AATT 1 cut(s) 974
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 4 cut(s) 40, 402, 425, 455
TaiI ACGT 2 cut(s) 435, 672
TaqI TCGA 4 cut(s) 129, 447, 471, 762
TaqII GACCGA 1 cut(s) 644
TasI AATT 1 cut(s) 974
TauI GCSGC 6 cut(s) 62, 90, 197, 285, 308, 661
TfiI GAWTC 3 cut(s) 481, 598, 632
Tru1I TTAA 3 cut(s) 120, 149, 951
Tru9I TTAA 3 cut(s) 120, 149, 951
TscAI CASTG 1 cut(s) 497
TseI GCWGC 3 cut(s) 71, 242, 462
TspDTI ATGAA 3 cut(s) 286, 433, 893
TspGWI ACGGA 5 cut(s) 361, 396, 640, 695, 807
TspRI CASTG 1 cut(s) 497
VpaK11BI GGWCC 2 cut(s) 36, 627
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.