Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000268

Physical Location & Seq

Genomic Coordinates Reverse (-)

60898863 .. 60900462

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCTCGGCCCCGACAATCGACCACAATACACAGAGGCTAACGAACCCCAAGTCGGTATTAAAAACATTAAGAAAGAGATTTCATCGCCTGAACTCAGTCCGGATCCCCTTTTGGAGTACGGTGATAAAATAGAACATCTAACCGCACAACTTTTACATGAAAAGCCGAGAAAGATACAAGATATTGGTCCTTTTAAAGGGTGTCGTGACCTTTCCAATGAAGAAGTAGATCTAATAGCTTTCATATATCTCAAAGTACGGAATGAAGAATGTGGGCATTCAACGCAATTTTTGAAGCAGAAATTAATGTATCTTTCACTAAGAAATGGTCCTTCTGTTCATTCAGTACATCATCCATATCATGTTCCCAAACAACATAATAGTTTTGACTGTGGCATTTACATGATCAAATTCATGCTGGATTATGAGAATGCATATCAAATTGGGGATGAGTTTGATTCTGTAAATGAGCGCGTGCAACTAGCCCTTAGGTTGTTGAAGCACCCAAACAACCTAGCACTCAGCAAAATTGAGAAAGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006282 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0009790 GO:0009792 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0016787 GO:0016926 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:1904331 GO:1904333 GO:2000112 GO:2000278 GO:2000573 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

181

Amino Acids

20.87

Weight (kDa)

6.3

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica	Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata	RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora	Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii	Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa	Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha	Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana	Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	474
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	98, 111
AcsI	RAATTY	1 cut(s)	410
AfaI	GTAC	3 cut(s)	119, 258, 348
AfiI	CCNNNNNNNGG	2 cut(s)	53, 197
AgsI	TTSAA	3 cut(s)	282, 295, 499
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
AlwI	GGATC	2 cut(s)	98, 111
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	410
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
AseI	ATTAAT	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	3 cut(s)	8, 188, 329
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	2 cut(s)	188, 329
AxyI	CCTNAGG	1 cut(s)	488
BamHI	GGATCC	1 cut(s)	103
BclI	TGATCA	1 cut(s)	405
BfaI	CTAG	2 cut(s)	482, 515
BglII	AGATCT	1 cut(s)	229
Bme18I	GGWCC	2 cut(s)	188, 329
BmgT120I	GGNCC	3 cut(s)	8, 188, 329
BmiI	GGNNCC	2 cut(s)	10, 105
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 197
Bse21I	CCTNAGG	1 cut(s)	488
BseAI	TCCGGA	1 cut(s)	100
BseGI	GGATG	2 cut(s)	352, 454
BseLI	CCNNNNNNNGG	2 cut(s)	53, 197
BseMII	CTCAG	2 cut(s)	109, 535
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	53, 197
BsmI	GAATGC	2 cut(s)	277, 436
BsnI	GGCC	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	103, 229, 405
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	2 cut(s)	108, 534
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	2 cut(s)	10, 105
BspPI	GGATC	2 cut(s)	98, 111
BssMI	GATC	3 cut(s)	103, 229, 405
Bst4CI	ACNGT	2 cut(s)	122, 392
BstC8I	GCNNGC	1 cut(s)	476
BstDEI	CTNAG	4 cut(s)	95, 320, 488, 521
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	352, 454
BstFNI	CGCG	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	3 cut(s)	106, 232, 408
BstMBI	GATC	3 cut(s)	103, 229, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstUI	CGCG	1 cut(s)	474
BstX2I	RGATCY	2 cut(s)	103, 229
BstYI	RGATCY	2 cut(s)	103, 229
Bsu36I	CCTNAGG	1 cut(s)	488
BsuRI	GGCC	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	352, 454
Cac8I	GCNNGC	1 cut(s)	476
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	3 cut(s)	8, 188, 329
Csp6I	GTAC	3 cut(s)	118, 257, 347
CviAII	CATG	4 cut(s)	158, 362, 403, 415
CviJI	RGCY	5 cut(s)	9, 38, 166, 239, 485
CviKI_1	RGCY	5 cut(s)	9, 38, 166, 239, 485
CviQI	GTAC	3 cut(s)	118, 257, 347
DdeI	CTNAG	4 cut(s)	95, 320, 488, 521
DpnI	GATC	3 cut(s)	105, 231, 407
DpnII	GATC	3 cut(s)	103, 229, 405
DraI	TTTAAA	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	188, 329
Eco81I	CCTNAGG	1 cut(s)	488
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	436
FaeI	CATG	4 cut(s)	161, 365, 406, 418
FatI	CATG	4 cut(s)	157, 361, 402, 414
FbaI	TGATCA	1 cut(s)	405
FokI	GGATG	2 cut(s)	339, 461
FspBI	CTAG	2 cut(s)	482, 515
GlaI	GCGC	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	4 cut(s)	161, 365, 406, 418
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	134
Hpy188III	TCNNGA	2 cut(s)	101, 206
HpyAV	CCTTC	1 cut(s)	342
HpyCH4III	ACNGT	2 cut(s)	122, 392
HpyCH4V	TGCA	2 cut(s)	434, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	4 cut(s)	95, 320, 488, 521
Hsp92II	CATG	4 cut(s)	161, 365, 406, 418
HspAI	GCGC	1 cut(s)	472
Kpn2I	TCCGGA	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	103, 229, 405
LpnPI	CCDG	3 cut(s)	102, 114, 404
MaeI	CTAG	2 cut(s)	482, 515
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	3 cut(s)	105, 231, 407
MboI	GATC	3 cut(s)	103, 229, 405
MboII	GAAGA	2 cut(s)	233, 278
MflI	RGATCY	2 cut(s)	103, 229
MluCI	AATT	5 cut(s)	287, 302, 410, 441, 528
MnlI	CCTC	1 cut(s)	28
Mph1103I	ATGCAT	1 cut(s)	436
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	4 cut(s)	60, 69, 195, 305
MslI	CAYNNNNRTG	1 cut(s)	401
MspI	CCGG	1 cut(s)	101
Mva1269I	GAATGC	2 cut(s)	277, 436
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeII	GATC	3 cut(s)	103, 229, 405
NlaIII	CATG	4 cut(s)	161, 365, 406, 418
NlaIV	GGNNCC	2 cut(s)	10, 105
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	206
NsiI	ATGCAT	1 cut(s)	436
PctI	GAATGC	2 cut(s)	277, 436
PfeI	GAWTC	1 cut(s)	458
PshBI	ATTAAT	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	10, 105
PspPI	GGNCC	3 cut(s)	8, 188, 329
PsuI	RGATCY	2 cut(s)	103, 229
RsaI	GTAC	3 cut(s)	119, 258, 348
RsaNI	GTAC	3 cut(s)	118, 257, 347
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	4 cut(s)	60, 69, 195, 305
Sau3AI	GATC	3 cut(s)	103, 229, 405
Sau96I	GGNCC	3 cut(s)	8, 188, 329
SetI	ASST	5 cut(s)	213, 241, 494, 516, 541
SinI	GGWCC	2 cut(s)	188, 329
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse9I	AATT	5 cut(s)	287, 302, 410, 441, 528
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	2 cut(s)	482, 515
TaaI	ACNGT	2 cut(s)	122, 392
TaqI	TCGA	1 cut(s)	19
TasI	AATT	5 cut(s)	287, 302, 410, 441, 528
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	4 cut(s)	60, 69, 195, 305
Tru9I	TTAA	4 cut(s)	60, 69, 195, 305
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	7 cut(s)	72, 174, 232, 234, 279, 329, 403
TspGWI	ACGGA	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	188, 329
VspI	ATTAAT	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	410
XspI	CTAG	2 cut(s)	482, 515
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.