Rw6G012780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000268
Physical Location & Seq
Forward (+)
23558048 .. 23560653
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G012780.1

Sequence Viewer

Length: 975 bp
ATGTCATATCCAACGGTGAGAAAGAAGAAAAAGGCTGACATGGATGAGTTGATGAATATCGGCGGTCTCAAGGACAGAGGAAAAAGACCTAGGAAGTACATTGAGAAGAAACAACCTAGCAAACTCAGTTTTTTTAATTTTTTTACAATTAAATCTCAAGAGATGAAGGAGAAAAACATTAAGGTGGATGTTATGGTTAGGAGACAGCTGGCTAATACATGGAGGTCCATGAAACCTGAAGAGAAGGCAAAGTATGCTGGGTCATATCCATGTGTTAAAGTTGGTTGTAGGGAATTCAGACATGATTTTTGTGGATTGAAACCTATAATCACCCAATGTCGTCCAGATGTTTTTAAAGATGTCATTTCAACATTTTCTGATGAAAGAAAAGCTGCAGTAGAAGAAATGGGTTTTGGGTTACTATTGCAGCTTCGCTGTGACCAATTGCAGTGCACCTTGTGTGGTTGGTTGGTTGATAGATTTGATCCTGATGCATCTTCAATTGAGGTACATGGTAAGACATTCAAGCTTAAACCATCTGACTTTGAGAATATAATGGGGGTCAAAGATGGAGGACATGATGTTGAGCTAAGTGACTCAGAGGATAACAACATACACGGACTAAAGATTATCCGTTGTGGAAAAGATAGAAGTCATATAAGTATGAGAGAAATAGCTAAGAGGTTGAGACAGACAAATATCGTCGATGACACCTTTAGAGTTGGGTCGTTAGCACCCATTGTTGCATGGGGAGATAAGGAGGCAAATGAATTAATTAAGTGGATCAGGACTCACAAAGGGGGTTTTGATAGTGTGGACATTACTGTTGTTTCTGACCGTACAGCCTTGATCAGCAAGGAAGATGAGGTGGGCCTGAAGAATGGTCTTGGGAGTGTACACATAATGGTTACTGCAAATGAACGGATGCAGCGAAAGGAAATTAGGATTGGTCCTGCCTACAAGTATGTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

324

Amino Acids

37.07

Weight (kDa)

9.29

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 63
AclWI GGATC 2 cut(s) 479, 791
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 2 cut(s) 258, 896
AdeI CACNNNGTG 1 cut(s) 459
AfaI GTAC 4 cut(s) 98, 510, 841, 897
AgsI TTSAA 4 cut(s) 319, 369, 501, 526
AjuI GAANNNNNNNTTGG 4 cut(s) 396, 428, 930, 962
AluBI AGCT 6 cut(s) 208, 392, 430, 529, 589, 677
AluI AGCT 6 cut(s) 208, 392, 430, 529, 589, 677
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 3 cut(s) 71, 196, 682
Alw44I GTGCAC 1 cut(s) 451
AlwI GGATC 2 cut(s) 479, 791
AoxI GGCC 1 cut(s) 871
ApaLI GTGCAC 1 cut(s) 451
ApeKI GCWGC 3 cut(s) 392, 427, 928
ApoI RAATTY 1 cut(s) 293
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AseI ATTAAT 1 cut(s) 773
AspA2I CCTAGG 1 cut(s) 89
AspS9I GGNCC 3 cut(s) 225, 871, 950
AsuHPI GGTGA 2 cut(s) 28, 322
AvaII GGWCC 2 cut(s) 225, 950
AvrII CCTAGG 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 455
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 3 cut(s) 379, 439, 940
BccI CCATC 2 cut(s) 544, 563
BclI TGATCA 1 cut(s) 849
BcoDI GTCTC 3 cut(s) 71, 196, 682
BfaI CTAG 2 cut(s) 90, 117
BfmI CTRYAG 1 cut(s) 393
BisI GCNGC 3 cut(s) 393, 428, 929
BlnI CCTAGG 1 cut(s) 89
BlsI GCNGC 3 cut(s) 394, 429, 930
Bme18I GGWCC 2 cut(s) 225, 950
BmgT120I GGNCC 3 cut(s) 225, 871, 950
BmsI GCATC 3 cut(s) 481, 503, 915
BpuEI CTTGAG 2 cut(s) 53, 141
BsaBI GATNNNNATC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 3 cut(s) 49, 193, 930
BseJI GATNNNNATC 1 cut(s) 56
BseMII CTCAG 2 cut(s) 139, 612
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 3 cut(s) 379, 439, 940
BseYI CCCAGC 1 cut(s) 257
BshFI GGCC 1 cut(s) 873
BsiHKAI GWGCWC 1 cut(s) 455
BsmAI GTCTC 3 cut(s) 71, 196, 682
BsnI GGCC 1 cut(s) 873
Bso31I GGTCTC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 455
Bsp1407I TGTACA 1 cut(s) 895
Bsp143I GATC 3 cut(s) 484, 783, 849
BspACI CCGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 873
BspCNI CTCAG 2 cut(s) 138, 611
BspMAI CTGCAG 1 cut(s) 397
BspPI GGATC 2 cut(s) 479, 791
BspTNI GGTCTC 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 895
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 3 cut(s) 484, 783, 849
BssT1I CCWWGG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 16, 826, 839
Bst6I CTCTTC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 895
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 4 cut(s) 125, 590, 598, 678
BstF5I GGATG 3 cut(s) 49, 193, 930
BstKTI GATC 3 cut(s) 487, 786, 852
BstMAI GTCTC 3 cut(s) 71, 196, 682
BstMBI GATC 3 cut(s) 484, 783, 849
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 3 cut(s) 379, 439, 940
BsuRI GGCC 1 cut(s) 873
BtsCI GGATG 3 cut(s) 49, 193, 930
BtsI GCAGTG 1 cut(s) 455
BtsIMutI CAGTG 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 225, 871, 950
Csp6I GTAC 4 cut(s) 97, 509, 840, 896
CviAII CATG 8 cut(s) 40, 219, 229, 270, 302, 512, 578, 747
CviQI GTAC 4 cut(s) 97, 509, 840, 896
DdeI CTNAG 4 cut(s) 125, 590, 598, 678
DpnI GATC 3 cut(s) 486, 785, 851
DpnII GATC 3 cut(s) 484, 783, 849
DraI TTTAAA 1 cut(s) 355
DraIII CACNNNGTG 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 225, 950
Eco57I CTGAAG 2 cut(s) 258, 896
EcoRI GAATTC 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 8 cut(s) 43, 222, 232, 273, 305, 515, 581, 750
FatI CATG 8 cut(s) 39, 218, 228, 269, 301, 511, 577, 746
FauNDI CATATG 1 cut(s) 971
FbaI TGATCA 1 cut(s) 849
Fnu4HI GCNGC 3 cut(s) 393, 428, 929
FokI GGATG 3 cut(s) 56, 200, 937
Fsp4HI GCNGC 3 cut(s) 393, 428, 929
FspBI CTAG 2 cut(s) 90, 117
GluI GCNGC 3 cut(s) 393, 428, 929
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 1 cut(s) 873
Hin1II CATG 8 cut(s) 43, 222, 232, 273, 305, 515, 581, 750
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 2 cut(s) 596, 790
HphI GGTGA 2 cut(s) 28, 322
Hpy166II GTNNAC 4 cut(s) 453, 817, 896, 898
Hpy188I TCNGA 5 cut(s) 299, 379, 541, 601, 835
Hpy188III TCNNGA 4 cut(s) 158, 344, 488, 787
Hpy8I GTNNAC 4 cut(s) 453, 817, 896, 898
Hpy99I CGWCG 1 cut(s) 707
HpyAV CCTTC 2 cut(s) 160, 238
HpyCH4III ACNGT 3 cut(s) 16, 826, 839
HpyCH4V TGCA 8 cut(s) 395, 427, 448, 453, 494, 746, 914, 928
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 4 cut(s) 125, 590, 598, 678
Hsp92II CATG 8 cut(s) 43, 222, 232, 273, 305, 515, 581, 750
Ksp22I TGATCA 1 cut(s) 849
Kzo9I GATC 3 cut(s) 484, 783, 849
LpnPI CCDG 8 cut(s) 194, 243, 249, 357, 501, 772, 887, 966
Lsp1109I GCAGC 3 cut(s) 379, 439, 940
LweI GCATC 3 cut(s) 481, 503, 915
MaeI CTAG 2 cut(s) 90, 117
MaeIII GTNAC 4 cut(s) 417, 437, 593, 907
MalI GATC 3 cut(s) 486, 785, 851
MboI GATC 3 cut(s) 484, 783, 849
MboII GAAGA 7 cut(s) 37, 118, 251, 413, 489, 872, 889
MfeI CAATTG 2 cut(s) 443, 501
MhlI GDGCHC 1 cut(s) 455
MluCI AATT 8 cut(s) 136, 147, 293, 443, 501, 770, 774, 939
MlyI GAGTC 2 cut(s) 590, 784
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 8 cut(s) 71, 216, 499, 566, 595, 675, 754, 859
Mph1103I ATGCAT 1 cut(s) 496
MseI TTAA 8 cut(s) 135, 150, 180, 276, 354, 531, 773, 777
MslI CAYNNNNRTG 2 cut(s) 182, 268
MspA1I CMGCKG 1 cut(s) 208
MunI CAATTG 2 cut(s) 443, 501
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeI CATATG 1 cut(s) 971
NdeII GATC 3 cut(s) 484, 783, 849
NlaIII CATG 8 cut(s) 43, 222, 232, 273, 305, 515, 581, 750
NmuCI GTSAC 2 cut(s) 437, 593
NsiI ATGCAT 1 cut(s) 496
PacI TTAATTAA 1 cut(s) 777
PcsI WCGNNNNNNNCGW 1 cut(s) 928
PkrI GCNGC 3 cut(s) 394, 429, 930
PleI GAGTC 2 cut(s) 590, 784
PpsI GAGTC 2 cut(s) 590, 784
PshBI ATTAAT 1 cut(s) 773
PspFI CCCAGC 1 cut(s) 257
PspPI GGNCC 3 cut(s) 225, 871, 950
PstI CTGCAG 1 cut(s) 397
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 4 cut(s) 98, 510, 841, 897
RsaNI GTAC 4 cut(s) 97, 509, 840, 896
RseI CAYNNNNRTG 2 cut(s) 182, 268
SaqAI TTAA 8 cut(s) 135, 150, 180, 276, 354, 531, 773, 777
SatI GCNGC 3 cut(s) 393, 428, 929
Sau3AI GATC 3 cut(s) 484, 783, 849
Sau96I GGNCC 3 cut(s) 225, 871, 950
SchI GAGTC 2 cut(s) 590, 784
SduI GDGCHC 1 cut(s) 455
SfaNI GCATC 3 cut(s) 481, 503, 915
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 2 cut(s) 225, 950
SmiMI CAYNNNNRTG 2 cut(s) 182, 268
SmlI CTYRAG 2 cut(s) 68, 156
SmoI CTYRAG 2 cut(s) 68, 156
Sse9I AATT 8 cut(s) 136, 147, 293, 443, 501, 770, 774, 939
SsiI CCGC 1 cut(s) 63
SspMI CTAG 2 cut(s) 90, 117
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 3 cut(s) 16, 826, 839
TaqI TCGA 1 cut(s) 705
TasI AATT 8 cut(s) 136, 147, 293, 443, 501, 770, 774, 939
TatI WGTACW 2 cut(s) 96, 895
Tru1I TTAA 8 cut(s) 135, 150, 180, 276, 354, 531, 773, 777
Tru9I TTAA 8 cut(s) 135, 150, 180, 276, 354, 531, 773, 777
TscAI CASTG 1 cut(s) 455
TseFI GTSAC 2 cut(s) 437, 593
TseI GCWGC 3 cut(s) 392, 427, 928
Tsp45I GTSAC 2 cut(s) 437, 593
TspDTI ATGAA 6 cut(s) 68, 179, 245, 396, 783, 933
TspGWI ACGGA 3 cut(s) 623, 633, 937
TspRI CASTG 1 cut(s) 455
VneI GTGCAC 1 cut(s) 451
VpaK11BI GGWCC 2 cut(s) 225, 950
VspI ATTAAT 1 cut(s) 773
XapI RAATTY 1 cut(s) 293
XmaJI CCTAGG 1 cut(s) 89
XspI CTAG 2 cut(s) 90, 117
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.