Rh1CG021100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000268
Physical Location & Seq
Forward (+)
3558139 .. 3560101
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG021100.1

Sequence Viewer

Length: 1110 bp
ATGACAAACGCTTTGGGGGACCTGAAAGAGGAATTTTTCAAAGCCATAAATGAACTGAAAGAGCCATATGTCAAGGAGGATCTAGTTGCTTCTTCATGTCAGATATTAAGTGAAGATGACGTTGAGCCACCAAATATCGAGGTCAAGGCTAGGGAACCTAGCACCAAAAAAACAATTATAAAGAAGGAGGCCTCATCGAATTATATTAGTCCAAAGAATCTTCGACACACTGTTGAAAGAAAGCCTGGCCATCAAATCTCAAGTCCATTTGTGCATTTAGGGAAGTTGGAAGTGATGGGGAATAAAATAGATCTTTTAACTACAAAACTTATGGAGGATAAGCTAAGAAAGCTGCAAGATATTGGTCCTTTCACAGGGTGTCGTGATCTTTATGATGATGACGTATATTTGATTGCCTTTGTATTTCTGGAATCAGAAGATCTAGATTTCAGAATTTTTCAAACTGATTATGAACGTCTTGACCGTTCGGCAATGCAATGCCTAGAGCCAGGGGGACTTGTTACCTCCGAGGGTAGAGCAATTACGACAGCCAAGAAAGGAGGTAATGATTTGTTAGAATTTGCTGCCACGGCACCAAAGAGATTTGCCTCTATATTACAATATCGAAAAGGCCTTAAGAATGGAGAAAAGCTTTTGGCATTGGACACAATATTTGACACTGAAATCCAAAGCTGTTTCAAGAGAGGATGGTCGTTATGTTCATTCACAGTTTTCAATGTAGATGACATTCACATTCAACAAAACAACTTCGATTGTGGCATTTTCATGCTCAGATACATAATAAACTATGATAATCCATTGAAAGATGAGTTAGATTCCATAAATCGTCGTGTGCAACTTGCCCTTTGGATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAAGAATATCAAGACAATAGAAGAAATTGACGAAGCTACTGGAAATAGTGTTGATCAACATCATGGCAAGAGATGTTCACAAGTCATGCAGAGAAAAACCTCAACACTACAAGCAAGGGGTCGCGGTCGCCCTCGTGGTGCAAAGAATAAAAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

42.02

Weight (kDa)

7.57

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AccB1I GGYRCC 2 cut(s) 592, 944
AccII CGCG 1 cut(s) 1074
AciI CCGC 1 cut(s) 1074
AclWI GGATC 1 cut(s) 87
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 3 cut(s) 32, 453, 578
AdeI CACNNNGTG 1 cut(s) 378
AfiI CCNNNNNNNGG 3 cut(s) 28, 374, 898
AflII CTTAAG 1 cut(s) 635
AgsI TTSAA 8 cut(s) 40, 236, 461, 700, 736, 758, 823, 877
AjnI CCWGG 2 cut(s) 244, 508
AluBI AGCT 6 cut(s) 343, 352, 652, 693, 986, 1104
AluI AGCT 6 cut(s) 343, 352, 652, 693, 986, 1104
AlwI GGATC 1 cut(s) 87
AoxI GGCC 3 cut(s) 189, 247, 631
ApeKI GCWGC 2 cut(s) 352, 584
ApoI RAATTY 3 cut(s) 32, 453, 578
ArsI GACNNNNNNTTYG 5 cut(s) 27, 247, 279, 656, 688
AseI ATTAAT 1 cut(s) 909
AspS9I GGNCC 2 cut(s) 19, 365
AsuHPI GGTGA 1 cut(s) 913
AvaII GGWCC 2 cut(s) 19, 365
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 2 cut(s) 592, 944
BauI CACGAG 1 cut(s) 1083
BbvI GCAGC 2 cut(s) 339, 571
BccI CCATC 4 cut(s) 258, 289, 702, 935
BceAI ACGGC 1 cut(s) 606
BciT130I CCWGG 2 cut(s) 246, 510
BclI TGATCA 1 cut(s) 1003
BfaI CTAG 5 cut(s) 83, 150, 159, 443, 503
BfrI CTTAAG 1 cut(s) 635
BglII AGATCT 2 cut(s) 310, 439
BisI GCNGC 2 cut(s) 353, 585
BlsI GCNGC 2 cut(s) 354, 586
Bme1390I CCNGG 2 cut(s) 246, 510
Bme18I GGWCC 2 cut(s) 19, 365
BmgT120I GGNCC 2 cut(s) 19, 365
BmiI GGNNCC 4 cut(s) 20, 156, 594, 946
BmrFI CCNGG 2 cut(s) 246, 510
BpuEI CTTGAG 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 1008
BsaJI CCNNGG 3 cut(s) 509, 528, 588
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 374, 898
Bse1I ACTGG 1 cut(s) 994
Bse3DI GCAATG 2 cut(s) 498, 503
Bse8I GATNNNNATC 1 cut(s) 1008
BseBI CCWGG 2 cut(s) 246, 510
BseDI CCNNGG 3 cut(s) 509, 528, 588
BseGI GGATG 2 cut(s) 713, 876
BseJI GATNNNNATC 1 cut(s) 1008
BseLI CCNNNNNNNGG 3 cut(s) 28, 374, 898
BseMI GCAATG 2 cut(s) 498, 503
BseMII CTCAG 1 cut(s) 805
BseNI ACTGG 1 cut(s) 994
BseXI GCAGC 2 cut(s) 339, 571
Bsh1236I CGCG 1 cut(s) 1074
Bsh1285I CGRYCG 1 cut(s) 1078
BshFI GGCC 3 cut(s) 191, 249, 633
BshNI GGYRCC 2 cut(s) 592, 944
BsiEI CGRYCG 1 cut(s) 1078
BslFI GGGAC 2 cut(s) 32, 528
BslI CCNNNNNNNGG 3 cut(s) 28, 374, 898
BsmFI GGGAC 2 cut(s) 32, 528
BsnI GGCC 3 cut(s) 191, 249, 633
Bsp143I GATC 5 cut(s) 79, 310, 385, 439, 1003
BspACI CCGC 1 cut(s) 1074
BspANI GGCC 3 cut(s) 191, 249, 633
BspCNI CTCAG 1 cut(s) 804
BspFNI CGCG 1 cut(s) 1074
BspLI GGNNCC 4 cut(s) 20, 156, 594, 946
BspPI GGATC 1 cut(s) 87
BspT107I GGYRCC 2 cut(s) 592, 944
BspTI CTTAAG 1 cut(s) 635
BsrDI GCAATG 2 cut(s) 498, 503
BsrI ACTGG 1 cut(s) 994
BssECI CCNNGG 3 cut(s) 509, 528, 588
BssMI GATC 5 cut(s) 79, 310, 385, 439, 1003
BssSI CACGAG 1 cut(s) 1083
Bst2BI CACGAG 1 cut(s) 1083
Bst2UI CCWGG 2 cut(s) 246, 510
Bst4CI ACNGT 3 cut(s) 232, 485, 730
BstAFI CTTAAG 1 cut(s) 635
BstDEI CTNAG 2 cut(s) 344, 791
BstDSI CCRYGG 1 cut(s) 588
BstENI CCTNNNNNAGG 2 cut(s) 26, 372
BstF5I GGATG 2 cut(s) 713, 876
BstFNI CGCG 1 cut(s) 1074
BstKTI GATC 5 cut(s) 82, 313, 388, 442, 1006
BstMBI GATC 5 cut(s) 79, 310, 385, 439, 1003
BstMCI CGRYCG 1 cut(s) 1078
BstMWI GCNNNNNNNGC 2 cut(s) 349, 590
BstNI CCWGG 2 cut(s) 246, 510
BstSCI CCNGG 2 cut(s) 244, 508
BstUI CGCG 1 cut(s) 1074
BstV1I GCAGC 2 cut(s) 339, 571
BstX2I RGATCY 3 cut(s) 79, 310, 439
BstYI RGATCY 3 cut(s) 79, 310, 439
BsuRI GGCC 3 cut(s) 191, 249, 633
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 2 cut(s) 713, 876
BtsIMutI CAGTG 2 cut(s) 228, 678
Cfr13I GGNCC 2 cut(s) 19, 365
CviAII CATG 5 cut(s) 96, 787, 897, 1013, 1036
DdeI CTNAG 2 cut(s) 344, 791
DpnI GATC 5 cut(s) 81, 312, 387, 441, 1005
DpnII GATC 5 cut(s) 79, 310, 385, 439, 1003
DraIII CACNNNGTG 1 cut(s) 378
EaeI YGGCCR 1 cut(s) 247
Eco147I AGGCCT 2 cut(s) 191, 633
Eco47I GGWCC 2 cut(s) 19, 365
EcoNI CCTNNNNNAGG 2 cut(s) 26, 372
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 244, 508
FaeI CATG 5 cut(s) 99, 790, 900, 1016, 1039
FaqI GGGAC 2 cut(s) 32, 528
FatI CATG 5 cut(s) 95, 786, 896, 1012, 1035
FauNDI CATATG 1 cut(s) 67
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 2 cut(s) 353, 585
FokI GGATG 2 cut(s) 720, 883
Fsp4HI GCNGC 2 cut(s) 353, 585
FspBI CTAG 5 cut(s) 83, 150, 159, 443, 503
GluI GCNGC 2 cut(s) 353, 585
HaeIII GGCC 3 cut(s) 191, 249, 633
Hin1II CATG 5 cut(s) 99, 790, 900, 1016, 1039
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 3 cut(s) 217, 431, 836
HphI GGTGA 1 cut(s) 913
Hpy166II GTNNAC 1 cut(s) 1028
Hpy188I TCNGA 5 cut(s) 102, 436, 452, 529, 794
Hpy188III TCNNGA 7 cut(s) 383, 428, 443, 479, 700, 961, 1107
Hpy8I GTNNAC 1 cut(s) 1028
Hpy99I CGWCG 1 cut(s) 852
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 3 cut(s) 232, 485, 730
HpyCH4IV ACGT 3 cut(s) 120, 402, 475
HpyCH4V TGCA 6 cut(s) 274, 355, 496, 856, 1039, 1091
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 590
HpyF3I CTNAG 2 cut(s) 344, 791
HpySE526I ACGT 3 cut(s) 120, 402, 475
Hsp92II CATG 5 cut(s) 99, 790, 900, 1016, 1039
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 5 cut(s) 79, 310, 385, 439, 1003
LpnPI CCDG 8 cut(s) 35, 231, 258, 360, 413, 495, 522, 975
Lsp1109I GCAGC 2 cut(s) 339, 571
MaeI CTAG 5 cut(s) 83, 150, 159, 443, 503
MaeII ACGT 3 cut(s) 120, 402, 475
MaeIII GTNAC 1 cut(s) 520
MalI GATC 5 cut(s) 81, 312, 387, 441, 1005
MboI GATC 5 cut(s) 79, 310, 385, 439, 1003
MboII GAAGA 6 cut(s) 84, 125, 212, 449, 964, 983
MflI RGATCY 3 cut(s) 79, 310, 439
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 8 cut(s) 32, 174, 199, 453, 540, 578, 906, 975
MluNI TGGCCA 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 267
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MseI TTAA 4 cut(s) 107, 317, 636, 909
MslI CAYNNNNRTG 1 cut(s) 785
Msp20I TGGCCA 1 cut(s) 249
MspCI CTTAAG 1 cut(s) 635
MspR9I CCNGG 2 cut(s) 246, 510
MvaI CCWGG 2 cut(s) 246, 510
MvnI CGCG 1 cut(s) 1074
MwoI GCNNNNNNNGC 2 cut(s) 349, 590
NdeI CATATG 1 cut(s) 67
NdeII GATC 5 cut(s) 79, 310, 385, 439, 1003
NlaIII CATG 5 cut(s) 99, 790, 900, 1016, 1039
NlaIV GGNNCC 4 cut(s) 20, 156, 594, 946
PceI AGGCCT 2 cut(s) 191, 633
PcsI WCGNNNNNNNCGW 1 cut(s) 481
PfeI GAWTC 3 cut(s) 217, 431, 836
PkrI GCNGC 2 cut(s) 354, 586
PpuMI RGGWCCY 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 909
PsiI TTATAA 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 2 cut(s) 244, 508
PspGI CCWGG 2 cut(s) 244, 508
PspN4I GGNNCC 4 cut(s) 20, 156, 594, 946
PspPI GGNCC 2 cut(s) 19, 365
PspPPI RGGWCCY 1 cut(s) 19
PsuI RGATCY 3 cut(s) 79, 310, 439
RseI CAYNNNNRTG 1 cut(s) 785
SaqAI TTAA 4 cut(s) 107, 317, 636, 909
SatI GCNGC 2 cut(s) 353, 585
Sau3AI GATC 5 cut(s) 79, 310, 385, 439, 1003
Sau96I GGNCC 2 cut(s) 19, 365
ScrFI CCNGG 2 cut(s) 246, 510
SinI GGWCC 2 cut(s) 19, 365
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 2 cut(s) 259, 635
SmoI CTYRAG 2 cut(s) 259, 635
Sse9I AATT 8 cut(s) 32, 174, 199, 453, 540, 578, 906, 975
SseBI AGGCCT 2 cut(s) 191, 633
SsiI CCGC 1 cut(s) 1074
SspI AATATT 1 cut(s) 672
SspMI CTAG 5 cut(s) 83, 150, 159, 443, 503
StuI AGGCCT 2 cut(s) 191, 633
StyD4I CCNGG 2 cut(s) 244, 508
TaaI ACNGT 3 cut(s) 232, 485, 730
TaiI ACGT 3 cut(s) 123, 405, 478
TaqI TCGA 5 cut(s) 138, 197, 223, 625, 771
TasI AATT 8 cut(s) 32, 174, 199, 453, 540, 578, 906, 975
TfiI GAWTC 3 cut(s) 217, 431, 836
Tru1I TTAA 4 cut(s) 107, 317, 636, 909
Tru9I TTAA 4 cut(s) 107, 317, 636, 909
TscAI CASTG 2 cut(s) 235, 685
TseI GCWGC 2 cut(s) 352, 584
TspDTI ATGAA 6 cut(s) 66, 84, 486, 711, 775, 942
TspRI CASTG 2 cut(s) 235, 685
Vha464I CTTAAG 1 cut(s) 635
VpaK11BI GGWCC 2 cut(s) 19, 365
VspI ATTAAT 1 cut(s) 909
XagI CCTNNNNNAGG 2 cut(s) 26, 372
XapI RAATTY 3 cut(s) 32, 453, 578
XbaI TCTAGA 1 cut(s) 442
XspI CTAG 5 cut(s) 83, 150, 159, 443, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.