Rw0G001830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00055
OG0000268
Physical Location & Seq
Forward (+)
60028 .. 61232
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001830.1

Sequence Viewer

Length: 798 bp
ATGGCGCCGAAGAAAATAAAAGATGACAAAGCAATCAATTCTGGTGAAGCGGCCAAAAACAAGAAGGTGACGGTTGGCCGATATGCGTTCAACCGATACCTGAAAATTCAAGCTGATGAGAAAAAGGCAAAGATAGATAATAAGTTCAGAAAAGAGGTTGCTTTTCAATGGCATACATTGAACCCTAATCAGAAGGCCGAATATTTTGTTCCAAACTCGAATGATTCCAATGCAATTCCTAAGGTCAATAGTGATACTTTAGCAGACTCAAAATTCATGGCCACACGGTGTAGTCCGAAAAAGTTTCAAGATCTTGTTTCCAGATTTTCAGAAGATCAAATTACTGCAGCAAAGGGAATGGGATTTGGCACCTTGTTGCAATTGTCCTGCACTAGAGTACGCCATGATTTGTGTGGCATCTTGGTAGATAAGTTTGACACAGAAAATCGTTCAATTGAGTTGCATGGTAGGACAATGAGTATTAGTTCTTCGGAATTTCAACATATTATGGGTGTACCTGAAGGTGGAACGAACATAGATTTCATTGGCTCGAGTGATGACAACTCTGATATGAAGAGGCTAGATGAAGCAAAAACAGCAGATGACAATTTCAAAGTCGGTTTTATTTTATTAGCATTAGGTATCTTACTTTGTCCCACTACATCAACAAGCATTCATCCGAAGTATCTTCTGCCATTGAGAGATCCGAAGAAAATGAGACAATTAAATTGGGCAAGTTATATATTTGAATTTTTGGTGGACAGTGTGCGGTCTTTCAAGCAAAAGAAATCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

265

Amino Acids

29.97

Weight (kDa)

9.42

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 368
AciI CCGC 2 cut(s) 50, 769
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 3 cut(s) 51, 76, 279
AcsI RAATTY 4 cut(s) 105, 272, 494, 749
AcuI CTGAAG 1 cut(s) 540
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 288
AfaI GTAC 2 cut(s) 399, 516
AfiI CCNNNNNNNGG 1 cut(s) 524
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 712
AlwI GGATC 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 550
AoxI GGCC 4 cut(s) 51, 76, 195, 279
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 4 cut(s) 105, 272, 494, 749
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 56, 79
AvaI CYCGRG 1 cut(s) 550
AxyI CCTNAGG 1 cut(s) 240
BalI TGGCCA 1 cut(s) 281
BanI GGYRCC 2 cut(s) 4, 368
BarI GAAGNNNNNNTAC 2 cut(s) 472, 504
BbvI GCAGC 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 712
BfaI CTAG 2 cut(s) 393, 581
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 310
BisI GCNGC 2 cut(s) 51, 348
BlsI GCNGC 2 cut(s) 52, 349
BmeT110I CYCGRG 1 cut(s) 550
BmiI GGNNCC 2 cut(s) 6, 370
BmsI GCATC 1 cut(s) 426
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 524
Bse21I CCTNAGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 676
BseLI CCNNNNNNNGG 1 cut(s) 524
BseXI GCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 373
BshFI GGCC 4 cut(s) 53, 78, 197, 281
BshNI GGYRCC 2 cut(s) 4, 368
BsiHKCI CYCGRG 1 cut(s) 550
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 1 cut(s) 524
BsmAI GTCTC 1 cut(s) 712
BsmFI GGGAC 1 cut(s) 639
BsmI GAATGC 1 cut(s) 672
BsnI GGCC 4 cut(s) 53, 78, 197, 281
BsoBI CYCGRG 1 cut(s) 550
Bsp143I GATC 3 cut(s) 310, 334, 703
BspACI CCGC 2 cut(s) 50, 769
BspANI GGCC 4 cut(s) 53, 78, 197, 281
BspLI GGNNCC 2 cut(s) 6, 370
BspMAI CTGCAG 1 cut(s) 349
BspPI GGATC 1 cut(s) 698
BspT107I GGYRCC 2 cut(s) 4, 368
BssMI GATC 3 cut(s) 310, 334, 703
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 3 cut(s) 73, 288, 764
Bst6I CTCTTC 1 cut(s) 569
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 676
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 313, 337, 706
BstMAI GTCTC 1 cut(s) 712
BstMBI GATC 3 cut(s) 310, 334, 703
BstMWI GCNNNNNNNGC 1 cut(s) 596
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 359
BstX2I RGATCY 2 cut(s) 310, 703
BstYI RGATCY 2 cut(s) 310, 703
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 4 cut(s) 53, 78, 197, 281
BtsCI GGATG 1 cut(s) 676
BtsIMutI CAGTG 1 cut(s) 769
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 2 cut(s) 398, 515
CviAII CATG 3 cut(s) 277, 404, 464
CviJI RGCY 7 cut(s) 53, 78, 113, 197, 281, 549, 580
CviKI_1 RGCY 7 cut(s) 53, 78, 113, 197, 281, 549, 580
CviQI GTAC 2 cut(s) 398, 515
DdeI CTNAG 1 cut(s) 240
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 312, 336, 705
DpnII GATC 3 cut(s) 310, 334, 703
DraIII CACNNNGTG 1 cut(s) 288
EaeI YGGCCR 3 cut(s) 51, 76, 279
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 540
Eco81I CCTNAGG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 550
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 3 cut(s) 280, 407, 467
FaqI GGGAC 1 cut(s) 639
FatI CATG 3 cut(s) 276, 403, 463
Fnu4HI GCNGC 2 cut(s) 51, 348
FokI GGATG 1 cut(s) 663
Fsp4HI GCNGC 2 cut(s) 51, 348
FspBI CTAG 2 cut(s) 393, 581
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 51, 348
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 53, 78, 197, 281
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 280, 407, 467
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 224, 266
HphI GGTGA 2 cut(s) 56, 79
Hpy166II GTNNAC 2 cut(s) 515, 760
Hpy188I TCNGA 8 cut(s) 149, 192, 297, 331, 493, 568, 681, 708
Hpy188III TCNNGA 3 cut(s) 308, 321, 792
Hpy8I GTNNAC 2 cut(s) 515, 760
HpyAV CCTTC 3 cut(s) 58, 187, 515
HpyCH4III ACNGT 3 cut(s) 73, 288, 764
HpyCH4V TGCA 5 cut(s) 233, 347, 379, 390, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 596
HpyF3I CTNAG 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 280, 407, 467
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 310, 334, 703
LpnPI CCDG 5 cut(s) 27, 113, 334, 400, 531
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 1 cut(s) 426
MaeI CTAG 2 cut(s) 393, 581
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 312, 336, 705
MboI GATC 3 cut(s) 310, 334, 703
MboII GAAGA 6 cut(s) 22, 344, 480, 586, 680, 721
MfeI CAATTG 2 cut(s) 380, 453
MflI RGATCY 2 cut(s) 310, 703
MlsI TGGCCA 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 281
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 2 cut(s) 148, 570
Mox20I TGGCCA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 281
MseI TTAA 1 cut(s) 725
Msp20I TGGCCA 1 cut(s) 281
MunI CAATTG 2 cut(s) 380, 453
Mva1269I GAATGC 1 cut(s) 672
MwoI GCNNNNNNNGC 1 cut(s) 596
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 310, 334, 703
NlaIII CATG 3 cut(s) 280, 407, 467
NlaIV GGNNCC 2 cut(s) 6, 370
NmuCI GTSAC 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 550
PctI GAATGC 1 cut(s) 672
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 52, 349
PleI GAGTC 1 cut(s) 260
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 6, 370
PspXI VCTCGAGB 1 cut(s) 550
PstI CTGCAG 1 cut(s) 349
PsuI RGATCY 2 cut(s) 310, 703
RsaI GTAC 2 cut(s) 399, 516
RsaNI GTAC 2 cut(s) 398, 515
SaqAI TTAA 1 cut(s) 725
SatI GCNGC 2 cut(s) 51, 348
Sau3AI GATC 3 cut(s) 310, 334, 703
SchI GAGTC 1 cut(s) 260
SetI ASST 9 cut(s) 69, 102, 115, 159, 246, 374, 520, 526, 643
SfaNI GCATC 1 cut(s) 426
SfcI CTRYAG 1 cut(s) 345
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 550
SlaI CTCGAG 1 cut(s) 550
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
SsiI CCGC 2 cut(s) 50, 769
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 203
SspMI CTAG 2 cut(s) 393, 581
TaaI ACNGT 3 cut(s) 73, 288, 764
TaqI TCGA 2 cut(s) 218, 551
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 725
Tru9I TTAA 1 cut(s) 725
TscAI CASTG 1 cut(s) 769
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 5 cut(s) 265, 532, 587, 600, 665
TspRI CASTG 1 cut(s) 769
XapI RAATTY 4 cut(s) 105, 272, 494, 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XhoI CTCGAG 1 cut(s) 550
XspI CTAG 2 cut(s) 393, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.