Rroxscaffold_2G00125070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000268
Physical Location & Seq
Reverse (-)
59643567 .. 59655865
12299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00125070.1

Sequence Viewer

Length: 501 bp
ATGGCTTCCATAGCTGGCTCATTCTCCCTTCCAGTACTATCACAGGTACCACAAACTTTCAGGAAAGCAATCGCTTTGAAATGGCATACACTTGATCCAACTGAGAAGGCAAAGTTTTTTGTTCCAAGCGCGCATGCTTCAAATGCAACTCCTAAAGCCAATGAGGATTTGTCCAAATGCTCAGCAACTTTGTTAACTCGATGTAGTCCACAGAGATTTCATTATATTGTTTCCCGATTTTCGGAAGATCAAATTAACGCAATAAAAGAAATGGGATTCGGCACGTTGCTTTATTATTACAACAGTATTGCCCATGGGAGGACAATTATCGATTGTTCAAAGCCTGTGGTTGCTGCCTGGGAAGACGTAAAGTCATCAAAACTACTTAAATGGATCTCGAGGAAAGGCGGTCTTCAGAGTTCTCCTATTGGGAAGTGCTATATACACACTCACTTGAGTGTGTGTGTTAGCCACACTCAGACAAGTATCAACTTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

166

Amino Acids

18.39

Weight (kDa)

9.49

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 46
AccII CGCG 1 cut(s) 131
AciI CCGC 1 cut(s) 408
AclWI GGATC 2 cut(s) 89, 401
AcuI CTGAAG 1 cut(s) 398
AfaI GTAC 2 cut(s) 36, 48
AfiI CCNNNNNNNGG 2 cut(s) 241, 318
AgsI TTSAA 3 cut(s) 79, 141, 339
AhdI GACNNNNNGTC 1 cut(s) 370
AjnI CCWGG 1 cut(s) 356
AleI CACNNNNGTG 1 cut(s) 456
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
AlwI GGATC 2 cut(s) 89, 401
Ama87I CYCGRG 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 353
Asp718I GGTACC 1 cut(s) 46
AspLEI GCGC 2 cut(s) 131, 133
AvaI CYCGRG 1 cut(s) 397
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 369, 404
BbvI GCAGC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 358
BisI GCNGC 1 cut(s) 354
BlpI GCTNAGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 355
BmcAI AGTACT 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 358
BmeRI GACNNNNNGTC 1 cut(s) 370
BmeT110I CYCGRG 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 358
BpiI GAAGAC 2 cut(s) 369, 404
Bpu1102I GCTNAGC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 475
Bsa29I ATCGAT 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 313, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 318
Bse1I ACTGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 358
BseCI ATCGAT 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 313, 357
BseLI CCNNNNNNNGG 2 cut(s) 241, 318
BseMII CTCAG 3 cut(s) 93, 195, 491
BseNI ACTGG 1 cut(s) 32
BsePI GCGCGC 1 cut(s) 129
BseXI GCAGC 1 cut(s) 340
Bsh1236I CGCG 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 397
BslI CCNNNNNNNGG 2 cut(s) 241, 318
BsoBI CYCGRG 1 cut(s) 397
Bsp143I GATC 3 cut(s) 94, 247, 393
Bsp1720I GCTNAGC 1 cut(s) 181
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 1 cut(s) 408
BspCNI CTCAG 3 cut(s) 94, 194, 490
BspDI ATCGAT 1 cut(s) 330
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 2 cut(s) 89, 401
BspT107I GGYRCC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 313, 357
BssHII GCGCGC 1 cut(s) 129
BssMI GATC 3 cut(s) 94, 247, 393
BssT1I CCWWGG 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 16, 131, 135
BstDEI CTNAG 3 cut(s) 102, 181, 477
BstDSI CCRYGG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 2 cut(s) 131, 133
BstKTI GATC 3 cut(s) 97, 250, 396
BstMBI GATC 3 cut(s) 94, 247, 393
BstMWI GCNNNNNNNGC 2 cut(s) 11, 143
BstNI CCWGG 1 cut(s) 358
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 356
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 340
BstV2I GAAGAC 2 cut(s) 369, 404
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
Bsu15I ATCGAT 1 cut(s) 330
BsuTUI ATCGAT 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 313
Cac8I GCNNGC 3 cut(s) 16, 131, 135
CfoI GCGC 2 cut(s) 131, 133
ClaI ATCGAT 1 cut(s) 330
Csp6I GTAC 2 cut(s) 35, 47
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 2 cut(s) 134, 314
CviJI RGCY 6 cut(s) 5, 14, 18, 158, 343, 471
CviKI_1 RGCY 6 cut(s) 5, 14, 18, 158, 343, 471
CviQI GTAC 2 cut(s) 35, 47
DdeI CTNAG 3 cut(s) 102, 181, 477
DpnI GATC 3 cut(s) 96, 249, 395
DpnII GATC 3 cut(s) 94, 247, 393
DriI GACNNNNNGTC 1 cut(s) 370
Eam1105I GACNNNNNGTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 398
Eco88I CYCGRG 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 2 cut(s) 137, 317
FaiI YATR 8 cut(s) 11, 87, 135, 225, 315, 441, 443, 499
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 2 cut(s) 133, 313
Fnu4HI GCNGC 1 cut(s) 354
Fsp4HI GCNGC 1 cut(s) 354
GlaI GCGC 2 cut(s) 130, 132
GluI GCNGC 1 cut(s) 354
HhaI GCGC 2 cut(s) 131, 133
Hin1II CATG 2 cut(s) 137, 317
Hin6I GCGC 2 cut(s) 129, 131
HinP1I GCGC 2 cut(s) 129, 131
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 1 cut(s) 276
HpaI GTTAAC 1 cut(s) 195
Hpy166II GTNNAC 2 cut(s) 195, 209
Hpy188I TCNGA 3 cut(s) 244, 417, 480
Hpy188III TCNNGA 3 cut(s) 61, 234, 397
Hpy8I GTNNAC 2 cut(s) 195, 209
HpyAV CCTTC 2 cut(s) 38, 100
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 2 cut(s) 284, 366
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 143
HpyF3I CTNAG 3 cut(s) 102, 181, 477
HpySE526I ACGT 2 cut(s) 284, 366
Hsp92II CATG 2 cut(s) 137, 317
HspAI GCGC 2 cut(s) 129, 131
KpnI GGTACC 1 cut(s) 50
KspAI GTTAAC 1 cut(s) 195
Kzo9I GATC 3 cut(s) 94, 247, 393
LpnPI CCDG 6 cut(s) 29, 45, 46, 343, 357, 370
Lsp1109I GCAGC 1 cut(s) 340
MaeII ACGT 2 cut(s) 284, 366
MalI GATC 3 cut(s) 96, 249, 395
MboI GATC 3 cut(s) 94, 247, 393
MboII GAAGA 3 cut(s) 257, 374, 404
MflI RGATCY 1 cut(s) 393
MluCI AATT 2 cut(s) 252, 324
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 3 cut(s) 157, 312, 393
MseI TTAA 3 cut(s) 194, 255, 387
MslI CAYNNNNRTG 1 cut(s) 456
MspR9I CCNGG 1 cut(s) 358
MvaI CCWGG 1 cut(s) 358
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 11, 143
NcoI CCATGG 1 cut(s) 313
NdeII GATC 3 cut(s) 94, 247, 393
NlaIII CATG 2 cut(s) 137, 317
NlaIV GGNNCC 1 cut(s) 48
NspI RCATGY 1 cut(s) 137
OliI CACNNNNGTG 1 cut(s) 456
PaeI GCATGC 1 cut(s) 137
PaeR7I CTCGAG 1 cut(s) 397
PauI GCGCGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 48
PsuI RGATCY 1 cut(s) 393
PteI GCGCGC 1 cut(s) 129
RsaI GTAC 2 cut(s) 36, 48
RsaNI GTAC 2 cut(s) 35, 47
RseI CAYNNNNRTG 1 cut(s) 456
SaqAI TTAA 3 cut(s) 194, 255, 387
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 3 cut(s) 94, 247, 393
ScaI AGTACT 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 358
SetI ASST 4 cut(s) 16, 48, 287, 369
Sfr274I CTCGAG 1 cut(s) 397
SlaI CTCGAG 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 2 cut(s) 397, 454
SmoI CTYRAG 2 cut(s) 397, 454
SphI GCATGC 1 cut(s) 137
Sse9I AATT 2 cut(s) 252, 324
SsiI CCGC 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 2 cut(s) 287, 369
TaqI TCGA 3 cut(s) 199, 330, 398
TasI AATT 2 cut(s) 252, 324
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 3 cut(s) 194, 255, 387
Tru9I TTAA 3 cut(s) 194, 255, 387
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 209
XceI RCATGY 1 cut(s) 137
XhoI CTCGAG 1 cut(s) 397
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.