FvH4_1g23642

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000268
Physical Location & Seq
Forward (+)
15491879 .. 15492860
982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23642.t1

Sequence Viewer

Length: 591 bp
ATGTCCAGCAATAGGACACTCAATTTGCGGTGGCTTGGTAACTTCAGGGGTCCTTTTAATTACGACGATGATGATTGTTATAACCTAAGTTTCATATTTGAAGAATTTGATAACGAGTTTATAGTTTTCAGAACAGATAGCGTCCACCTAACTCGGGGTGAAATAAGATGTTTAGATCCGGGACAACTTGTTAGTAATGCTCTTATAACTGCAGTACAATCAATTTTGCGGGCACCTGGGTCTCTTCAATGGTTCATTGGTCCATATCTTTCGGAGTCCGCAATATTCGCAGAAGATCGTAAGAAATTATCAGAGTTTGCACTCACGGCGAAAGAGACTTTCAACTATGATTTCCGATACACTGTATTTGAGAAATGTGAAAAGATTTTCATTCCCCTCCTAGATAAAGGCATTCATGGGAATCATTGGTTCTTGATGGTAATAAAAATACCAAGTAAGGAAGTTGAGATATGGGATAGTTTGCCTTGTCGGACACGCGAGACTGCTCGAAATGAACTAGCTTCTATTTTGTTGAAAACACTGGACATCATGTTTGAGGATGAGATTTACATATTTTTCCATGAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

197

Amino Acids

23.06

Weight (kDa)

5.07

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 120 - 176 6.4e-08 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 81, 206
AccB1I GGYRCC 1 cut(s) 232
AccII CGCG 1 cut(s) 498
AciI CCGC 3 cut(s) 28, 229, 279
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 28
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 12, 154
AgsI TTSAA 4 cut(s) 101, 248, 343, 535
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 1 cut(s) 521
AluI AGCT 1 cut(s) 521
Alw26I GTCTC 3 cut(s) 246, 329, 494
AlwI GGATC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 153
ApoI RAATTY 1 cut(s) 104
ArsI GACNNNNNNTTYG 4 cut(s) 7, 39, 536, 568
AspS9I GGNCC 2 cut(s) 50, 260
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 2 cut(s) 50, 260
BaeGI GKGCMC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 232
BccI CCATC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 342
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 3 cut(s) 246, 329, 494
BfaI CTAG 2 cut(s) 401, 518
BfmI CTRYAG 1 cut(s) 210
Bme1390I CCNGG 2 cut(s) 180, 237
Bme18I GGWCC 2 cut(s) 50, 260
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 50, 260
BmiI GGNNCC 2 cut(s) 51, 234
BmrFI CCNGG 2 cut(s) 180, 237
BpuMI CCSGG 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 154
Bse1I ACTGG 1 cut(s) 546
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 2 cut(s) 12, 154
BseNI ACTGG 1 cut(s) 546
BseSI GKGCMC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 498
BshNI GGYRCC 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 2 cut(s) 12, 154
BsmAI GTCTC 3 cut(s) 246, 329, 494
BsmFI GGGAC 1 cut(s) 195
BsmI GAATGC 1 cut(s) 411
Bso31I GGTCTC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 2 cut(s) 175, 295
BspACI CCGC 3 cut(s) 28, 229, 279
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 2 cut(s) 51, 234
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 546
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 2 cut(s) 175, 295
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 565
BstFNI CGCG 1 cut(s) 498
BstKTI GATC 2 cut(s) 178, 298
BstMAI GTCTC 3 cut(s) 246, 329, 494
BstMBI GATC 2 cut(s) 175, 295
BstMWI GCNNNNNNNGC 2 cut(s) 287, 326
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 178, 235
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 1 cut(s) 498
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BtsCI GGATG 1 cut(s) 565
BtsIMutI CAGTG 2 cut(s) 360, 539
Cac8I GCNNGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 50, 260
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 215
CviAII CATG 3 cut(s) 416, 550, 581
CviJI RGCY 2 cut(s) 34, 521
CviKI_1 RGCY 2 cut(s) 34, 521
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 1 cut(s) 86
DpnI GATC 2 cut(s) 177, 297
DpnII GATC 2 cut(s) 175, 295
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 50, 260
Eco57I CTGAAG 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 3 cut(s) 419, 553, 584
FaqI GGGAC 1 cut(s) 195
FatI CATG 3 cut(s) 415, 549, 580
FauI CCCGC 1 cut(s) 222
FokI GGATG 1 cut(s) 572
FspBI CTAG 2 cut(s) 401, 518
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 130
Hin1II CATG 3 cut(s) 419, 553, 584
HinfI GANTC 2 cut(s) 275, 421
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 5 cut(s) 131, 274, 313, 356, 492
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 2 cut(s) 212, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 326
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 3 cut(s) 419, 553, 584
Kzo9I GATC 2 cut(s) 175, 295
LpnPI CCDG 6 cut(s) 19, 31, 192, 222, 249, 527
MaeI CTAG 2 cut(s) 401, 518
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 177, 297
MboI GATC 2 cut(s) 175, 295
MboII GAAGA 3 cut(s) 113, 236, 305
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 5 cut(s) 22, 58, 104, 222, 305
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 2 cut(s) 407, 550
MseI TTAA 1 cut(s) 57
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 180, 237
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 287, 326
NciI CCSGG 1 cut(s) 180
NdeII GATC 2 cut(s) 175, 295
NlaIII CATG 3 cut(s) 419, 553, 584
NlaIV GGNNCC 2 cut(s) 51, 234
PctI GAATGC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 421
PfoI TCCNGGA 1 cut(s) 178
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 50
PsiI TTATAA 2 cut(s) 81, 206
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 51, 234
PspPI GGNCC 2 cut(s) 50, 260
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 2 cut(s) 175, 295
Sau96I GGNCC 2 cut(s) 50, 260
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 180, 237
SduI GDGCHC 1 cut(s) 235
SetI ASST 4 cut(s) 87, 150, 238, 523
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 2 cut(s) 50, 260
Sse9I AATT 5 cut(s) 22, 58, 104, 222, 305
SsiI CCGC 3 cut(s) 28, 229, 279
SspI AATATT 1 cut(s) 285
SspMI CTAG 2 cut(s) 401, 518
StyD4I CCNGG 2 cut(s) 178, 235
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 1 cut(s) 508
TasI AATT 5 cut(s) 22, 58, 104, 222, 305
TatI WGTACW 1 cut(s) 214
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 2 cut(s) 367, 546
TspDTI ATGAA 5 cut(s) 82, 244, 379, 404, 528
TspRI CASTG 2 cut(s) 367, 546
VpaK11BI GGWCC 2 cut(s) 50, 260
XapI RAATTY 1 cut(s) 104
XspI CTAG 2 cut(s) 401, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.