Rroxscaffold_2G00139560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000268
Physical Location & Seq
Forward (+)
77916675 .. 77918661
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139560.1

Sequence Viewer

Length: 246 bp
ATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGACGAAGCTACTGGAAATAGTGTTGATCAACATCATGGCAAGAGCTGTTCACAAGTCTTGCAGAGAAAAGCCTCAACACTACAAGCAAGGGGTCGTGGTCGCCCTCGTGGTGCAAAGAATAAAAACTCTCGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.07

Weight (kDa)

10.14

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 7
AluBI AGCT 2 cut(s) 116, 153
AluI AGCT 2 cut(s) 116, 153
AseI ATTAAT 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 43
BanI GGYRCC 1 cut(s) 74
BauI CACGAG 1 cut(s) 213
BccI CCATC 1 cut(s) 65
BclI TGATCA 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 138
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 28
Bsp143I GATC 2 cut(s) 87, 133
BspLI GGNNCC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 124
BssMI GATC 2 cut(s) 87, 133
BssSI CACGAG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 213
BstKTI GATC 2 cut(s) 90, 136
BstMBI GATC 2 cut(s) 87, 133
CviAII CATG 2 cut(s) 27, 143
CviJI RGCY 4 cut(s) 47, 116, 153, 179
CviKI_1 RGCY 4 cut(s) 47, 116, 153, 179
DpnI GATC 2 cut(s) 89, 135
DpnII GATC 2 cut(s) 87, 133
FaeI CATG 2 cut(s) 30, 146
FaiI YATR 2 cut(s) 28, 144
FatI CATG 2 cut(s) 26, 142
FbaI TGATCA 1 cut(s) 133
Hin1II CATG 2 cut(s) 30, 146
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 91, 237
Hpy8I GTNNAC 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 169, 221
Hsp92II CATG 2 cut(s) 30, 146
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 87, 133
LpnPI CCDG 1 cut(s) 105
MalI GATC 2 cut(s) 89, 135
MboI GATC 2 cut(s) 87, 133
MboII GAAGA 1 cut(s) 113
MluCI AATT 2 cut(s) 36, 105
MnlI CCTC 3 cut(s) 37, 190, 222
MseI TTAA 1 cut(s) 39
NdeII GATC 2 cut(s) 87, 133
NlaIII CATG 2 cut(s) 30, 146
NlaIV GGNNCC 1 cut(s) 76
PshBI ATTAAT 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 2 cut(s) 87, 133
SetI ASST 2 cut(s) 118, 155
Sse9I AATT 2 cut(s) 36, 105
TaqI TCGA 1 cut(s) 238
TasI AATT 2 cut(s) 36, 105
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 72
VspI ATTAAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.