Rh6DG132100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000268
Physical Location & Seq
Forward (+)
18781035 .. 18784426
3392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG132100.1

Sequence Viewer

Length: 1170 bp
ATGAAACCTGAAGAGAAGGCAAAGTATGCTGGGTCATATCCATGTGTTAAAGTTGGTTGTAGGGAATTCAGACATGATTTTTGTGGATTGAAACCTATAATCACCCAATGTCGTCCAGATGTTTTTAAAGATGTCATTTCAACATTTTCTGATGAAAGAAAAGCTGCAGTAGAAGAAATGGGTTTTGGGTTACTATTGCAGCTTCGCTGTGACCAATTGCAGTGCACCTTGTGTGGTTGGTTGGTTGATAGATTTGATCCTGATGCATCTTCAATTGAGGTACATGGTAAGACATTCAAGCTTAAACCATCTGACTTTGAGAATATAATGGGGGTCAAAGATGGAGGACATGATGTTGAGCTAAGTGACTCAGAGGATAACAACATACACGGACTAAAGATTATCCGTTGTGGAAAAGATAGAAATCAAATAAGTATGAGAGAAATAGCTAAGAGGTTGAGACAGACAAATATTGTCGATGACACCTTTAGAGTTGGGTTCGTGTTATTTTTGCTGGGCACCTTGCTCTGTCCTTCTTCAATTATATTGGCTTCAAAGTACCTGCAACCATTAAGGGAAACCAGTGATATAAAACTCAAAAATTGGGCGACATTCTCATTCAAATATCTAGTTGAAGGTGTTAGTTCCTTTAAGAATAGAAAACGATCCTGTGTGATCAATGGATGTGTACTATTCTTGCAGCTCTTTTATTTTGATCTCATTGTTCATGGAAGAACATTTGTAAATAGGTCGTTAGCACCCATTGTTGCATGGGGAGATAAGGAGGCAAATGAATTAATTAAGTGGATCAGGACTCACAAAGGGGGTTTTGAAAGTGTGGACATTACTGTTGTTTCTGACCGTACAGCCTTGATCAGCAAGGAAGATGAGGTGGCCCTGAAGAATGGTCTTGGGAGTGTACACATAAAGGTTACTGCAAATGAACGGATGCAGCGAAAGACAAATGATGAAATGAAAGTGGCTGAATTGGAAGCTAAACTTGACAGTGAGATGGGCAAAATTGAAGGCCTTACTTACTGGCAAGTCTTTCAAGCTGCTAACATTTTGGCTACCAGATTTGACCTGCTGAGTGCGTTTCTTCCCATGTCCCGGGAAAGGAAGAAGGATTATGTTTTATATCTCTTAGAGCATGGCACCCATGGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

389

Amino Acids

44.23

Weight (kDa)

8.38

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 570, 1092
AccB1I GGYRCC 2 cut(s) 518, 1154
AclWI GGATC 3 cut(s) 251, 660, 815
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 30, 920
AdeI CACNNNGTG 1 cut(s) 231
AfaI GTAC 5 cut(s) 282, 560, 690, 865, 921
AfiI CCNNNNNNNGG 2 cut(s) 1110, 1116
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 8 cut(s) 164, 202, 301, 361, 449, 703, 995, 1055
AluI AGCT 8 cut(s) 164, 202, 301, 361, 449, 703, 995, 1055
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 454
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 3 cut(s) 251, 660, 815
Ama87I CYCGRG 1 cut(s) 1110
AoxI GGCC 2 cut(s) 894, 1027
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 5 cut(s) 164, 199, 700, 952, 1055
ApoI RAATTY 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AseI ATTAAT 1 cut(s) 797
AspS9I GGNCC 1 cut(s) 895
AsuC2I CCSGG 2 cut(s) 1111, 1112
AsuHPI GGTGA 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 1110
BaeGI GKGCMC 2 cut(s) 227, 521
BanI GGYRCC 2 cut(s) 518, 1154
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 5 cut(s) 151, 211, 712, 964, 1042
BccI CCATC 3 cut(s) 316, 335, 1006
BclI TGATCA 2 cut(s) 675, 873
BcnI CCSGG 2 cut(s) 1111, 1112
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 1 cut(s) 629
BfmI CTRYAG 1 cut(s) 165
BfuAI ACCTGC 2 cut(s) 570, 1092
BisI GCNGC 5 cut(s) 165, 200, 701, 953, 1056
BlsI GCNGC 5 cut(s) 166, 201, 702, 954, 1057
Bme1390I CCNGG 2 cut(s) 1111, 1112
BmeT110I CYCGRG 1 cut(s) 1110
BmgT120I GGNCC 1 cut(s) 895
BmiI GGNNCC 2 cut(s) 520, 1156
BmrFI CCNGG 2 cut(s) 1111, 1112
BmsI GCATC 3 cut(s) 253, 275, 939
BpuMI CCSGG 2 cut(s) 1111, 1112
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 1110, 1159
Bsc4I CCNNNNNNNGG 2 cut(s) 1110, 1116
Bse1I ACTGG 2 cut(s) 582, 1043
Bse8I GATNNNNATC 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 1110, 1159
BseGI GGATG 2 cut(s) 689, 954
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 1110, 1116
BseMII CTCAG 2 cut(s) 384, 1079
BseNI ACTGG 2 cut(s) 582, 1043
BseSI GKGCMC 2 cut(s) 227, 521
BseXI GCAGC 5 cut(s) 151, 211, 712, 964, 1042
BseYI CCCAGC 2 cut(s) 29, 514
BshFI GGCC 2 cut(s) 896, 1029
BshNI GGYRCC 2 cut(s) 518, 1154
BsiHKAI GWGCWC 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 1110
BsiSI CCGG 1 cut(s) 1111
BslFI GGGAC 1 cut(s) 1093
BslI CCNNNNNNNGG 2 cut(s) 1110, 1116
BsmAI GTCTC 1 cut(s) 454
BsmFI GGGAC 1 cut(s) 1093
BsnI GGCC 2 cut(s) 896, 1029
BsoBI CYCGRG 1 cut(s) 1110
Bsp1286I GDGCHC 2 cut(s) 227, 521
Bsp1407I TGTACA 1 cut(s) 919
Bsp143I GATC 6 cut(s) 256, 665, 675, 715, 807, 873
Bsp19I CCATGG 1 cut(s) 1159
BspANI GGCC 2 cut(s) 896, 1029
BspCNI CTCAG 2 cut(s) 383, 1080
BspLI GGNNCC 2 cut(s) 520, 1156
BspMAI CTGCAG 1 cut(s) 169
BspMI ACCTGC 2 cut(s) 570, 1092
BspPI GGATC 3 cut(s) 251, 660, 815
BspT107I GGYRCC 2 cut(s) 518, 1154
BsrGI TGTACA 1 cut(s) 919
BsrI ACTGG 2 cut(s) 582, 1043
BssECI CCNNGG 2 cut(s) 1110, 1159
BssMI GATC 6 cut(s) 256, 665, 675, 715, 807, 873
BssT1I CCWWGG 1 cut(s) 1159
Bst4CI ACNGT 3 cut(s) 850, 863, 1007
Bst6I CTCTTC 1 cut(s) 6
BstAPI GCANNNNNTGC 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 919
BstDEI CTNAG 5 cut(s) 362, 370, 450, 1088, 1144
BstDSI CCRYGG 1 cut(s) 1159
BstF5I GGATG 2 cut(s) 689, 954
BstKTI GATC 6 cut(s) 259, 668, 678, 718, 810, 876
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 6 cut(s) 256, 665, 675, 715, 807, 873
BstMWI GCNNNNNNNGC 2 cut(s) 26, 1161
BstSCI CCNGG 2 cut(s) 1109, 1110
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 2 cut(s) 227, 521
BstV1I GCAGC 5 cut(s) 151, 211, 712, 964, 1042
BsuRI GGCC 2 cut(s) 896, 1029
BtgI CCRYGG 1 cut(s) 1159
BtsCI GGATG 2 cut(s) 689, 954
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 3 cut(s) 227, 589, 1012
BveI ACCTGC 2 cut(s) 570, 1092
Cfr13I GGNCC 1 cut(s) 895
Cfr9I CCCGGG 1 cut(s) 1110
Csp6I GTAC 5 cut(s) 281, 559, 689, 864, 920
CviAII CATG 9 cut(s) 42, 74, 284, 350, 728, 771, 1105, 1151, 1160
CviQI GTAC 5 cut(s) 281, 559, 689, 864, 920
DdeI CTNAG 5 cut(s) 362, 370, 450, 1088, 1144
DpnI GATC 6 cut(s) 258, 667, 677, 717, 809, 875
DpnII GATC 6 cut(s) 256, 665, 675, 715, 807, 873
DraI TTTAAA 1 cut(s) 127
DraIII CACNNNGTG 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 1159
Eco147I AGGCCT 1 cut(s) 1029
Eco57I CTGAAG 2 cut(s) 30, 920
Eco88I CYCGRG 1 cut(s) 1110
EcoRI GAATTC 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 1159
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 1159
FaeI CATG 9 cut(s) 45, 77, 287, 353, 731, 774, 1108, 1154, 1163
FalI AAGNNNNNCTT 2 cut(s) 984, 1016
FaqI GGGAC 1 cut(s) 1093
FatI CATG 9 cut(s) 41, 73, 283, 349, 727, 770, 1104, 1150, 1159
FbaI TGATCA 2 cut(s) 675, 873
Fnu4HI GCNGC 5 cut(s) 165, 200, 701, 953, 1056
FokI GGATG 2 cut(s) 696, 961
Fsp4HI GCNGC 5 cut(s) 165, 200, 701, 953, 1056
FspBI CTAG 1 cut(s) 629
GluI GCNGC 5 cut(s) 165, 200, 701, 953, 1056
GsaI CCCAGC 2 cut(s) 33, 518
HaeIII GGCC 2 cut(s) 896, 1029
HapII CCGG 1 cut(s) 1111
Hin1II CATG 9 cut(s) 45, 77, 287, 353, 731, 774, 1108, 1154, 1163
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 2 cut(s) 368, 814
HpaII CCGG 1 cut(s) 1111
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 5 cut(s) 225, 689, 841, 920, 922
Hpy188I TCNGA 5 cut(s) 71, 151, 313, 373, 859
Hpy188III TCNNGA 3 cut(s) 116, 260, 811
Hpy8I GTNNAC 5 cut(s) 225, 689, 841, 920, 922
HpyAV CCTTC 5 cut(s) 10, 543, 629, 1019, 1117
HpyCH4III ACNGT 3 cut(s) 850, 863, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 1161
HpyF3I CTNAG 5 cut(s) 362, 370, 450, 1088, 1144
Hsp92II CATG 9 cut(s) 45, 77, 287, 353, 731, 774, 1108, 1154, 1163
Ksp22I TGATCA 2 cut(s) 675, 873
Kzo9I GATC 6 cut(s) 256, 665, 675, 715, 807, 873
Lsp1109I GCAGC 5 cut(s) 151, 211, 712, 964, 1042
LweI GCATC 3 cut(s) 253, 275, 939
MaeI CTAG 1 cut(s) 629
MaeIII GTNAC 4 cut(s) 189, 209, 365, 931
MalI GATC 6 cut(s) 258, 667, 677, 717, 809, 875
MboI GATC 6 cut(s) 256, 665, 675, 715, 807, 873
MboII GAAGA 9 cut(s) 23, 185, 261, 528, 744, 896, 913, 1091, 1132
MfeI CAATTG 2 cut(s) 215, 273
MhlI GDGCHC 2 cut(s) 227, 521
MluCI AATT 9 cut(s) 65, 215, 273, 540, 601, 794, 798, 986, 1020
MlyI GAGTC 2 cut(s) 362, 808
MnlI CCTC 6 cut(s) 271, 338, 367, 447, 778, 883
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 7 cut(s) 48, 126, 303, 572, 651, 797, 801
MslI CAYNNNNRTG 1 cut(s) 40
MspI CCGG 1 cut(s) 1111
MspR9I CCNGG 2 cut(s) 1111, 1112
MunI CAATTG 2 cut(s) 215, 273
MwoI GCNNNNNNNGC 2 cut(s) 26, 1161
NciI CCSGG 2 cut(s) 1111, 1112
NcoI CCATGG 1 cut(s) 1159
NdeII GATC 6 cut(s) 256, 665, 675, 715, 807, 873
NlaIII CATG 9 cut(s) 45, 77, 287, 353, 731, 774, 1108, 1154, 1163
NlaIV GGNNCC 2 cut(s) 520, 1156
NmuCI GTSAC 2 cut(s) 209, 365
NsiI ATGCAT 1 cut(s) 268
PacI TTAATTAA 1 cut(s) 801
PceI AGGCCT 1 cut(s) 1029
PcsI WCGNNNNNNNCGW 1 cut(s) 952
PkrI GCNGC 5 cut(s) 166, 201, 702, 954, 1057
PleI GAGTC 2 cut(s) 362, 808
PpsI GAGTC 2 cut(s) 362, 808
PshBI ATTAAT 1 cut(s) 797
PspFI CCCAGC 2 cut(s) 29, 514
PspN4I GGNNCC 2 cut(s) 520, 1156
PspPI GGNCC 1 cut(s) 895
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 5 cut(s) 282, 560, 690, 865, 921
RsaNI GTAC 5 cut(s) 281, 559, 689, 864, 920
RseI CAYNNNNRTG 1 cut(s) 40
SaqAI TTAA 7 cut(s) 48, 126, 303, 572, 651, 797, 801
SatI GCNGC 5 cut(s) 165, 200, 701, 953, 1056
Sau3AI GATC 6 cut(s) 256, 665, 675, 715, 807, 873
Sau96I GGNCC 1 cut(s) 895
SchI GAGTC 2 cut(s) 362, 808
ScrFI CCNGG 2 cut(s) 1111, 1112
SduI GDGCHC 2 cut(s) 227, 521
SfaNI GCATC 3 cut(s) 253, 275, 939
SfcI CTRYAG 1 cut(s) 165
SmaI CCCGGG 1 cut(s) 1112
SmiMI CAYNNNNRTG 1 cut(s) 40
Sse9I AATT 9 cut(s) 65, 215, 273, 540, 601, 794, 798, 986, 1020
SseBI AGGCCT 1 cut(s) 1029
SspI AATATT 1 cut(s) 472
SspMI CTAG 1 cut(s) 629
StuI AGGCCT 1 cut(s) 1029
StyD4I CCNGG 2 cut(s) 1109, 1110
StyI CCWWGG 1 cut(s) 1159
TaaI ACNGT 3 cut(s) 850, 863, 1007
TaqI TCGA 1 cut(s) 477
TasI AATT 9 cut(s) 65, 215, 273, 540, 601, 794, 798, 986, 1020
TatI WGTACW 2 cut(s) 688, 919
Tru1I TTAA 7 cut(s) 48, 126, 303, 572, 651, 797, 801
Tru9I TTAA 7 cut(s) 48, 126, 303, 572, 651, 797, 801
TscAI CASTG 3 cut(s) 227, 589, 1012
TseFI GTSAC 2 cut(s) 209, 365
TseI GCWGC 5 cut(s) 164, 199, 700, 952, 1055
Tsp45I GTSAC 2 cut(s) 209, 365
TspDTI ATGAA 7 cut(s) 17, 168, 716, 807, 957, 984, 989
TspGWI ACGGA 3 cut(s) 395, 405, 961
TspMI CCCGGG 1 cut(s) 1110
TspRI CASTG 3 cut(s) 227, 589, 1012
VneI GTGCAC 1 cut(s) 223
VspI ATTAAT 1 cut(s) 797
XapI RAATTY 1 cut(s) 65
XmaI CCCGGG 1 cut(s) 1110
XspI CTAG 1 cut(s) 629
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.