Rroxscaffold_6G00428030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000268
Physical Location & Seq
Forward (+)
48534204 .. 48540773
6570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428030.1

Sequence Viewer

Length: 576 bp
ATGGAAAGGCAATGTCATAGGCTAGAGGCCAATGCCCTCCTTGGACGCGTGCTGGTGTTTTTTGGCCGTGGGTCGGCGGATCGAATCGGAACTGCGGCTTTGGTGTCGGCGATCCGGCCCGTGTCGTGGTGTCGGAGTTGGTTGGTCGATGTCGGATCTAGGCGGACGAAGGCGGTAGGAGGGTTTGCCGTGACGCCGGCGGTGATTGGACGGGACACGGAGTTGGCTAGGATTGTTTTAAGCGTCCGGGAGGTGACTGCGGTGAAGGGCTGCGAGCAAAAAGAGAGATTGGAAGAACCGACGGGGAACCTTAGGTTTGACCTAGGGCTGACCACCGCATCTAATTCATGGAGGATTATGAGAATGCATCCAAAGCAGGGACAGGTTTCATTACGTGAACGAGCGTCTGCCATAGCTCTCACCTTGTTGAGGCATCCGAACAACCAAGCACGCAACAATATTGCTGAAGCTAGACAAAAATCACTTCAAAAAGTTATATGCAAGAAACTTGGACCAAACACAATGAAGATAGATCAAGACATCACAGCACGCAGCAATACCGATGAAGGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.14

Weight (kDa)

10.61

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 48
AciI CCGC 7 cut(s) 77, 95, 163, 173, 200, 260, 336
AclWI GGATC 3 cut(s) 87, 106, 163
AcoI YGGCCR 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 194
AfiI CCNNNNNNNGG 4 cut(s) 73, 126, 377, 429
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 1 cut(s) 488
AluBI AGCT 2 cut(s) 416, 470
AluI AGCT 2 cut(s) 416, 470
AlwI GGATC 3 cut(s) 87, 106, 163
AoxI GGCC 3 cut(s) 27, 64, 116
ApeKI GCWGC 2 cut(s) 270, 552
AspA2I CCTAGG 1 cut(s) 322
AspS9I GGNCC 2 cut(s) 117, 512
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 4 cut(s) 214, 265, 274, 412
AvaII GGWCC 1 cut(s) 512
AvrII CCTAGG 1 cut(s) 322
AxyI CCTNAGG 1 cut(s) 311
BbvI GCAGC 2 cut(s) 257, 564
BceAI ACGGC 2 cut(s) 51, 173
BcnI CCSGG 1 cut(s) 248
BfaI CTAG 5 cut(s) 23, 159, 228, 323, 471
BisI GCNGC 3 cut(s) 96, 271, 553
BlnI CCTAGG 1 cut(s) 322
BlsI GCNGC 3 cut(s) 97, 272, 554
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 512
BmgT120I GGNCC 2 cut(s) 117, 512
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 3 cut(s) 347, 376, 442
BpuMI CCSGG 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 40, 67, 322
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 126, 377, 429
Bse118I RCCGGY 1 cut(s) 196
Bse21I CCTNAGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 17
BseDI CCNNGG 3 cut(s) 40, 67, 322
BseGI GGATG 2 cut(s) 367, 433
BseLI CCNNNNNNNGG 4 cut(s) 73, 126, 377, 429
BseMI GCAATG 1 cut(s) 17
BseXI GCAGC 2 cut(s) 257, 564
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 3 cut(s) 29, 66, 118
BsiSI CCGG 3 cut(s) 115, 197, 247
BslFI GGGAC 2 cut(s) 227, 393
BslI CCNNNNNNNGG 4 cut(s) 73, 126, 377, 429
BsmFI GGGAC 2 cut(s) 227, 393
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 3 cut(s) 29, 66, 118
Bsp143I GATC 4 cut(s) 79, 111, 155, 532
BspACI CCGC 7 cut(s) 77, 95, 163, 173, 200, 260, 336
BspANI GGCC 3 cut(s) 29, 66, 118
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 308
BspPI GGATC 3 cut(s) 87, 106, 163
BsrDI GCAATG 1 cut(s) 17
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 3 cut(s) 40, 67, 322
BssMI GATC 4 cut(s) 79, 111, 155, 532
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 2 cut(s) 40, 322
BstACI GRCGYC 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 395
BstC8I GCNNGC 5 cut(s) 50, 198, 275, 451, 550
BstDEI CTNAG 1 cut(s) 311
BstDSI CCRYGG 1 cut(s) 67
BstENI CCTNNNNNAGG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 367, 433
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 4 cut(s) 82, 114, 158, 535
BstMBI GATC 4 cut(s) 79, 111, 155, 532
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 246
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 257, 564
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
Bsu36I CCTNAGG 1 cut(s) 311
BsuRI GGCC 3 cut(s) 29, 66, 118
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 367, 433
Cac8I GCNNGC 5 cut(s) 50, 198, 275, 451, 550
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 117, 512
CseI GACGC 4 cut(s) 54, 202, 232, 393
CviAII CATG 1 cut(s) 348
DdeI CTNAG 1 cut(s) 311
DpnI GATC 4 cut(s) 81, 113, 157, 534
DpnII GATC 4 cut(s) 79, 111, 155, 532
EaeI YGGCCR 1 cut(s) 64
EciI GGCGGA 2 cut(s) 92, 178
Eco130I CCWWGG 2 cut(s) 40, 322
Eco47I GGWCC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 486
Eco81I CCTNAGG 1 cut(s) 311
EcoNI CCTNNNNNAGG 1 cut(s) 427
EcoT14I CCWWGG 2 cut(s) 40, 322
EcoT22I ATGCAT 1 cut(s) 369
ErhI CCWWGG 2 cut(s) 40, 322
FaeI CATG 1 cut(s) 351
FaiI YATR 6 cut(s) 18, 349, 359, 413, 497, 499
FaqI GGGAC 2 cut(s) 227, 393
FatI CATG 1 cut(s) 347
Fnu4HI GCNGC 3 cut(s) 96, 271, 553
FokI GGATG 2 cut(s) 354, 420
Fsp4HI GCNGC 3 cut(s) 96, 271, 553
FspBI CTAG 5 cut(s) 23, 159, 228, 323, 471
GluI GCNGC 3 cut(s) 96, 271, 553
HaeIII GGCC 3 cut(s) 29, 66, 118
HapII CCGG 3 cut(s) 115, 197, 247
HgaI GACGC 4 cut(s) 54, 202, 232, 393
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 1 cut(s) 351
HinfI GANTC 1 cut(s) 84
HpaII CCGG 3 cut(s) 115, 197, 247
HphI GGTGA 4 cut(s) 214, 265, 274, 412
Hpy166II GTNNAC 1 cut(s) 398
Hpy188I TCNGA 4 cut(s) 89, 135, 155, 438
Hpy188III TCNNGA 1 cut(s) 536
Hpy8I GTNNAC 1 cut(s) 398
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 3 cut(s) 163, 259, 560
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 2 cut(s) 367, 501
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 1 cut(s) 311
HpySE526I ACGT 1 cut(s) 394
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 1 cut(s) 351
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 4 cut(s) 79, 111, 155, 532
LpnPI CCDG 6 cut(s) 38, 128, 210, 260, 362, 368
Lsp1109I GCAGC 2 cut(s) 257, 564
LweI GCATC 3 cut(s) 347, 376, 442
MaeI CTAG 5 cut(s) 23, 159, 228, 323, 471
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 2 cut(s) 190, 253
MalI GATC 4 cut(s) 81, 113, 157, 534
MboI GATC 4 cut(s) 79, 111, 155, 532
MboII GAAGA 2 cut(s) 305, 538
MflI RGATCY 1 cut(s) 155
MluCI AATT 1 cut(s) 343
MluI ACGCGT 1 cut(s) 46
MmeI TCCRAC 2 cut(s) 113, 133
MnlI CCTC 6 cut(s) 19, 47, 173, 244, 345, 423
Mph1103I ATGCAT 1 cut(s) 369
MreI CGCCGGCG 1 cut(s) 196
MroNI GCCGGC 1 cut(s) 196
MseI TTAA 1 cut(s) 239
MspI CCGG 3 cut(s) 115, 197, 247
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 369
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 373
NaeI GCCGGC 1 cut(s) 198
NciI CCSGG 1 cut(s) 248
NdeII GATC 4 cut(s) 79, 111, 155, 532
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 1 cut(s) 351
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 2 cut(s) 190, 253
NsiI ATGCAT 1 cut(s) 369
PctI GAATGC 1 cut(s) 369
PdiI GCCGGC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 84
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 3 cut(s) 97, 272, 554
Ppu21I YACGTR 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 2 cut(s) 117, 512
PsuI RGATCY 1 cut(s) 155
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 3 cut(s) 96, 271, 553
Sau3AI GATC 4 cut(s) 79, 111, 155, 532
Sau96I GGNCC 2 cut(s) 117, 512
ScrFI CCNGG 1 cut(s) 248
SfaNI GCATC 3 cut(s) 347, 376, 442
SgrAI CRCCGGYG 1 cut(s) 196
SinI GGWCC 1 cut(s) 512
Sse9I AATT 1 cut(s) 343
SsiI CCGC 7 cut(s) 77, 95, 163, 173, 200, 260, 336
SspI AATATT 1 cut(s) 460
SspMI CTAG 5 cut(s) 23, 159, 228, 323, 471
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 2 cut(s) 40, 322
TaiI ACGT 1 cut(s) 397
TaqI TCGA 2 cut(s) 82, 147
TasI AATT 1 cut(s) 343
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseFI GTSAC 2 cut(s) 190, 253
TseI GCWGC 2 cut(s) 270, 552
Tsp45I GTSAC 2 cut(s) 190, 253
TspDTI ATGAA 3 cut(s) 336, 378, 539
TspGWI ACGGA 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 512
XagI CCTNNNNNAGG 1 cut(s) 427
XmaJI CCTAGG 1 cut(s) 322
XspI CTAG 5 cut(s) 23, 159, 228, 323, 471
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.