Rmu_sc0004704.1_g000001

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004704.1
OG0000268
Physical Location & Seq
Reverse (-)
7000 .. 7571
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004704.1_g000001.1.cds

Sequence Viewer

Length: 492 bp
atgcagctgaagacactggacatgatatttaataacgagattatgattcatttcgatgaaggatgcacattctcttcatttaaaattattcatcccgattgtgttccagtacaaaaaaatggattcgattgtggtatttttatgattaaattcatggaggattatgagaatgcatccaaagcaggggacaagtatcattctgtgaacgagcgtctgcgcatagctctcaccttgttgaggcatccggacaaccaagcacgcaacaatattgctgaagctagacaaaggtcactgcaaaaagttatatgcaagaaacgtggaccaaacacaatgaagatagatcaagatagcacagcacgcagcgatactgatgaaggtttgcaaaggtctccaaagaaaatgaaggcaatccatgaaatagatgcagccaacgtgaacaagaaaaaaggtcctggtcggcctcgtggatcaaagaataaacctaagaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

163

Amino Acids

18.62

Weight (kDa)

9.64

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 218
AccIII TCCGGA 1 cut(s) 244
AclWI GGATC 1 cut(s) 475
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 2 cut(s) 29, 294
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 183, 237
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 3 cut(s) 7, 224, 278
AluI AGCT 3 cut(s) 7, 224, 278
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 1 cut(s) 475
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 3 cut(s) 4, 360, 425
ApoI RAATTY 1 cut(s) 149
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 320, 449
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 320, 449
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 16, 372, 437
BciT130I CCWGG 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 1 cut(s) 279
BisI GCNGC 3 cut(s) 5, 361, 426
BlsI GCNGC 3 cut(s) 6, 362, 427
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 2 cut(s) 320, 449
BmgT120I GGNCC 2 cut(s) 320, 449
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 4 cut(s) 53, 182, 250, 412
BoxI GACNNNNGTC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 237
Bse1I ACTGG 2 cut(s) 21, 107
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 453
BseGI GGATG 4 cut(s) 68, 91, 173, 241
BseLI CCNNNNNNNGG 2 cut(s) 183, 237
BseNI ACTGG 2 cut(s) 21, 107
BseXI GCAGC 3 cut(s) 16, 372, 437
BshFI GGCC 1 cut(s) 460
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 183, 237
BsmAI GTCTC 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 460
Bso31I GGTCTC 1 cut(s) 393
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 2 cut(s) 340, 467
BspANI GGCC 1 cut(s) 460
BspEI TCCGGA 1 cut(s) 244
BspPI GGATC 1 cut(s) 475
BspTNI GGTCTC 1 cut(s) 393
BsrI ACTGG 2 cut(s) 21, 107
BssMI GATC 2 cut(s) 340, 467
BssSI CACGAG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 453
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 259, 358
BstDEI CTNAG 1 cut(s) 483
BstENI CCTNNNNNAGG 1 cut(s) 235
BstF5I GGATG 4 cut(s) 68, 91, 173, 241
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 2 cut(s) 343, 470
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 2 cut(s) 340, 467
BstMWI GCNNNNNNNGC 2 cut(s) 179, 357
BstNI CCWGG 1 cut(s) 453
BstPAI GACNNNNGTC 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 451
BstV1I GCAGC 3 cut(s) 16, 372, 437
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 460
BtsCI GGATG 4 cut(s) 68, 91, 173, 241
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 2 cut(s) 14, 290
Cac8I GCNNGC 2 cut(s) 259, 358
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 2 cut(s) 320, 449
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 110
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 3 cut(s) 22, 154, 413
CviJI RGCY 5 cut(s) 7, 224, 278, 428, 460
CviKI_1 RGCY 5 cut(s) 7, 224, 278, 428, 460
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 483
DpnI GATC 2 cut(s) 342, 469
DpnII GATC 2 cut(s) 340, 467
DraI TTTAAA 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 393
Eco47I GGWCC 2 cut(s) 320, 449
Eco57I CTGAAG 2 cut(s) 29, 294
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 175
FaeI CATG 3 cut(s) 25, 157, 416
FaiI YATR 9 cut(s) 23, 44, 143, 155, 165, 221, 305, 307, 414
FaqI GGGAC 1 cut(s) 200
FatI CATG 3 cut(s) 21, 153, 412
Fnu4HI GCNGC 3 cut(s) 5, 361, 426
FokI GGATG 4 cut(s) 75, 78, 160, 228
Fsp4HI GCNGC 3 cut(s) 5, 361, 426
FspBI CTAG 1 cut(s) 279
FspI TGCGCA 1 cut(s) 218
GlaI GCGC 1 cut(s) 218
GluI GCNGC 3 cut(s) 5, 361, 426
HaeIII GGCC 1 cut(s) 460
HapII CCGG 1 cut(s) 245
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 219
Hin1II CATG 3 cut(s) 25, 157, 416
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 2 cut(s) 46, 123
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 3 cut(s) 205, 320, 436
Hpy188III TCNNGA 3 cut(s) 95, 245, 344
Hpy8I GTNNAC 3 cut(s) 205, 320, 436
HpyAV CCTTC 3 cut(s) 53, 368, 397
HpyCH4IV ACGT 2 cut(s) 316, 432
HpyCH4V TGCA 7 cut(s) 4, 66, 173, 295, 309, 382, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 357
HpyF3I CTNAG 1 cut(s) 483
HpySE526I ACGT 2 cut(s) 316, 432
Hsp92II CATG 3 cut(s) 25, 157, 416
HspAI GCGC 1 cut(s) 217
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 2 cut(s) 340, 467
LpnPI CCDG 6 cut(s) 2, 120, 168, 258, 438, 465
Lsp1109I GCAGC 3 cut(s) 16, 372, 437
LweI GCATC 4 cut(s) 53, 182, 250, 412
MaeI CTAG 1 cut(s) 279
MaeII ACGT 2 cut(s) 316, 432
MaeIII GTNAC 1 cut(s) 288
MalI GATC 2 cut(s) 342, 469
MboI GATC 2 cut(s) 340, 467
MboII GAAGA 3 cut(s) 22, 66, 346
MluCI AATT 2 cut(s) 84, 149
MnlI CCTC 3 cut(s) 151, 231, 471
Mph1103I ATGCAT 1 cut(s) 175
MroI TCCGGA 1 cut(s) 244
MseI TTAA 3 cut(s) 30, 81, 147
MslI CAYNNNNRTG 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 453
MwoI GCNNNNNNNGC 2 cut(s) 179, 357
NdeII GATC 2 cut(s) 340, 467
NlaIII CATG 3 cut(s) 25, 157, 416
NmuCI GTSAC 1 cut(s) 288
NsbI TGCGCA 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 175
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 46, 123
PkrI GCNGC 3 cut(s) 6, 362, 427
PpuMI RGGWCCY 1 cut(s) 449
PshAI GACNNNNGTC 1 cut(s) 286
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 451
PspPI GGNCC 2 cut(s) 320, 449
PspPPI RGGWCCY 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 3 cut(s) 30, 81, 147
SatI GCNGC 3 cut(s) 5, 361, 426
Sau3AI GATC 2 cut(s) 340, 467
Sau96I GGNCC 2 cut(s) 320, 449
ScrFI CCNGG 1 cut(s) 453
SfaNI GCATC 4 cut(s) 53, 182, 250, 412
SinI GGWCC 2 cut(s) 320, 449
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 2 cut(s) 84, 149
SspI AATATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 451
TaiI ACGT 2 cut(s) 319, 435
TaqI TCGA 2 cut(s) 54, 126
TasI AATT 2 cut(s) 84, 149
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 2 cut(s) 46, 123
Tru1I TTAA 3 cut(s) 30, 81, 147
Tru9I TTAA 3 cut(s) 30, 81, 147
TscAI CASTG 2 cut(s) 21, 297
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 3 cut(s) 4, 360, 425
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 9 cut(s) 38, 66, 72, 80, 142, 347, 387, 416, 429
TspRI CASTG 2 cut(s) 21, 297
VpaK11BI GGWCC 2 cut(s) 320, 449
XagI CCTNNNNNAGG 1 cut(s) 235
XapI RAATTY 1 cut(s) 149
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.