Rorug03G0272300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000268
Physical Location & Seq
Reverse (-)
26864265 .. 26866278
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0272300.1

Sequence Viewer

Length: 849 bp
ATGTCCGGATACCCACAACCACCGCCAAACTACGGCTACGGCAGCGCCCCTCCGCCCGGCAAACCCTACGCCGCCTCCCCTCCCTACGGCGCACCTCCTCCTGCCGCCCAACACCAACACCAACACCAACAACACCAGGCCTCCTCCCCGTACGGAGCTCCCTCCGCGCCCTACGCCGCTCCTCCTCACGGAAGCAGCGGCGGAGGCGCCGGATACGGTGCTCCGTACGCGGCTCCTCCACAACACGGCGGCGGCGGATACCCGGCCCCGGCCTCGGCTCCGGGCTACGGAAGCCCCTTTGGTGCTCTGGTGCCGTCGTCGTTCCCGCCCGGTACGGACCCGAACGTGGTGGCTTGCTTCCAGATTGCTGATCAGGACGGCAGCGGGCTCATCGACGACAAGGAGTTGCAGAAGGCGCTCTCGTCGTACAATCAGAGCTTCAGCTTGAGGACTGTTCATCTTCTCATGTATCTCTTCACCCAGACCAACACCAGAAAGATCGGGCCTAAGGAATTCACCGCGGTGTTTTACAGTCTTCAGAACTGGAGGGGAATATTTGAGAAGTTCGACAGAGACAGGAGTGGGAAAATTGACTCAAATGAGTTGAGAGATGCATTGGGGAGTCTGGGATTTTCTGTCTCACCTGCGGTTTTGGATTTGCTGGTGTCCAAGTTTGATAAGACTGGAGGTCACATGAAGGCCATTGAATATGATAATTTCATCGAGTGTTGTCTTACTGTTAAGGGGTTAACTGAGAAGTTTAAGGAGAAGGACAAAGCATACACTGGTCATGCAACTTTTAGTTACGAGGACTTCATGTTGATTGTTTTGCCTTTCCTCATCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

30.13

Weight (kDa)

6.49

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 182 - 242 1.6e-08 EF-hand domain pair
EF-hand_6 PF13405 182 - 210 2.2e-07 EF-hand domain
EF-hand_1 PF00036 183 - 208 2.1e-06 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 652
Acc36I ACCTGC 1 cut(s) 652
AccB1I GGYRCC 2 cut(s) 206, 310
AccBSI CCGCTC 1 cut(s) 179
AccII CGCG 3 cut(s) 167, 230, 521
AccIII TCCGGA 1 cut(s) 5
AcsI RAATTY 1 cut(s) 512
AcuI CTGAAG 2 cut(s) 424, 521
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 4 cut(s) 152, 227, 334, 428
AfiI CCNNNNNNNGG 9 cut(s) 32, 56, 86, 188, 245, 268, 274, 287, 346
AgsI TTSAA 1 cut(s) 707
AhdI GACNNNNNGTC 1 cut(s) 687
AjnI CCWGG 1 cut(s) 135
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 3 cut(s) 158, 438, 444
AluI AGCT 3 cut(s) 158, 438, 444
Alw21I GWGCWC 3 cut(s) 160, 223, 307
Alw26I GTCTC 2 cut(s) 567, 643
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 5 cut(s) 138, 264, 270, 503, 699
ApeKI GCWGC 3 cut(s) 42, 195, 381
ApoI RAATTY 1 cut(s) 512
AspLEI GCGC 5 cut(s) 47, 92, 169, 209, 418
AspS9I GGNCC 3 cut(s) 265, 337, 503
AsuC2I CCSGG 5 cut(s) 57, 263, 269, 282, 330
AsuHPI GGTGA 3 cut(s) 469, 508, 633
AvaII GGWCC 1 cut(s) 337
AxyI CCTNAGG 1 cut(s) 507
BanI GGYRCC 2 cut(s) 206, 310
BanII GRGCYC 2 cut(s) 160, 390
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 3 cut(s) 160, 223, 307
BbvI GCAGC 3 cut(s) 54, 207, 393
BceAI ACGGC 6 cut(s) 49, 55, 103, 262, 298, 394
BciT130I CCWGG 1 cut(s) 137
BciVI GTATCC 2 cut(s) 206, 251
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 5 cut(s) 57, 263, 269, 282, 330
BcoDI GTCTC 2 cut(s) 567, 643
BfoI RGCGCY 3 cut(s) 48, 210, 419
BfuAI ACCTGC 1 cut(s) 652
BfuI GTATCC 2 cut(s) 206, 251
Bme1390I CCNGG 6 cut(s) 57, 137, 263, 269, 282, 330
Bme18I GGWCC 1 cut(s) 337
BmeRI GACNNNNNGTC 1 cut(s) 687
BmgT120I GGNCC 3 cut(s) 265, 337, 503
BmiI GGNNCC 6 cut(s) 208, 234, 267, 279, 312, 339
BmrFI CCNGG 6 cut(s) 57, 137, 263, 269, 282, 330
BmsI GCATC 1 cut(s) 601
BpiI GAAGAC 1 cut(s) 527
BpmI CTGGAG 2 cut(s) 565, 705
BpuEI CTTGAG 1 cut(s) 466
BpuMI CCSGG 5 cut(s) 57, 263, 269, 282, 330
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 267, 273, 519
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 125, 155
Bsc4I CCNNNNNNNGG 9 cut(s) 32, 56, 86, 188, 245, 268, 274, 287, 346
Bse1I ACTGG 3 cut(s) 548, 688, 790
Bse21I CCTNAGG 1 cut(s) 507
BseAI TCCGGA 1 cut(s) 5
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 3 cut(s) 267, 273, 519
BseLI CCNNNNNNNGG 9 cut(s) 32, 56, 86, 188, 245, 268, 274, 287, 346
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 3 cut(s) 548, 688, 790
BseRI GAGGAG 5 cut(s) 87, 133, 171, 174, 225
BseXI GCAGC 3 cut(s) 54, 207, 393
Bsh1236I CGCG 3 cut(s) 167, 230, 521
BshFI GGCC 5 cut(s) 140, 266, 272, 505, 701
BshNI GGYRCC 2 cut(s) 206, 310
BsiHKAI GWGCWC 3 cut(s) 160, 223, 307
BsiSI CCGG 7 cut(s) 6, 57, 210, 263, 269, 281, 330
BsiWI CGTACG 2 cut(s) 150, 225
BslI CCNNNNNNNGG 9 cut(s) 32, 56, 86, 188, 245, 268, 274, 287, 346
BsmAI GTCTC 2 cut(s) 567, 643
BsnI GGCC 5 cut(s) 140, 266, 272, 505, 701
Bsp1286I GDGCHC 4 cut(s) 160, 223, 307, 390
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 2 cut(s) 370, 498
BspANI GGCC 5 cut(s) 140, 266, 272, 505, 701
BspCNI CTCAG 1 cut(s) 745
BspEI TCCGGA 1 cut(s) 5
BspFNI CGCG 3 cut(s) 167, 230, 521
BspLI GGNNCC 6 cut(s) 208, 234, 267, 279, 312, 339
BspMI ACCTGC 1 cut(s) 652
BspT107I GGYRCC 2 cut(s) 206, 310
BsrBI CCGCTC 1 cut(s) 179
BsrI ACTGG 3 cut(s) 548, 688, 790
BssECI CCNNGG 3 cut(s) 267, 273, 519
BssMI GATC 2 cut(s) 370, 498
BssNI GRCGYC 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 4 cut(s) 218, 454, 533, 739
Bst6I CTCTTC 1 cut(s) 479
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 355, 386
BstDEI CTNAG 2 cut(s) 507, 753
BstDSI CCRYGG 1 cut(s) 519
BstFNI CGCG 3 cut(s) 167, 230, 521
BstH2I RGCGCY 3 cut(s) 48, 210, 419
BstHHI GCGC 5 cut(s) 47, 92, 169, 209, 418
BstKTI GATC 2 cut(s) 373, 501
BstMAI GTCTC 2 cut(s) 567, 643
BstMBI GATC 2 cut(s) 370, 498
BstMWI GCNNNNNNNGC 7 cut(s) 42, 164, 173, 204, 227, 291, 415
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 6 cut(s) 55, 135, 261, 267, 280, 328
BstUI CGCG 3 cut(s) 167, 230, 521
BstV1I GCAGC 3 cut(s) 54, 207, 393
BstV2I GAAGAC 1 cut(s) 527
Bsu36I CCTNAGG 1 cut(s) 507
BsuI GTATCC 2 cut(s) 206, 251
BsuRI GGCC 5 cut(s) 140, 266, 272, 505, 701
BtgI CCRYGG 1 cut(s) 519
BtgZI GCGATG 1 cut(s) 826
BtsIMutI CAGTG 1 cut(s) 783
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 2 cut(s) 355, 386
CfoI GCGC 5 cut(s) 47, 92, 169, 209, 418
Cfr13I GGNCC 3 cut(s) 265, 337, 503
Cfr42I CCGCGG 1 cut(s) 522
Csp6I GTAC 4 cut(s) 151, 226, 333, 427
CviAII CATG 4 cut(s) 466, 694, 791, 817
CviQI GTAC 4 cut(s) 151, 226, 333, 427
DdeI CTNAG 2 cut(s) 507, 753
DinI GGCGCC 1 cut(s) 208
DpnI GATC 2 cut(s) 372, 500
DpnII GATC 2 cut(s) 370, 498
DriI GACNNNNNGTC 1 cut(s) 687
Eam1104I CTCTTC 1 cut(s) 479
Eam1105I GACNNNNNGTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 479
EciI GGCGGA 3 cut(s) 42, 216, 270
Ecl136II GAGCTC 1 cut(s) 158
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 2 cut(s) 160, 390
Eco47I GGWCC 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 158
Eco57I CTGAAG 2 cut(s) 424, 521
Eco81I CCTNAGG 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 616
EcoT38I GRGCYC 2 cut(s) 160, 390
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
FaeI CATG 4 cut(s) 469, 697, 794, 820
FaiI YATR 7 cut(s) 467, 695, 711, 781, 792, 818, 847
FatI CATG 4 cut(s) 465, 693, 790, 816
FauI CCCGC 2 cut(s) 333, 377
FbaI TGATCA 1 cut(s) 370
FriOI GRGCYC 2 cut(s) 160, 390
GlaI GCGC 5 cut(s) 46, 91, 168, 208, 417
GsuI CTGGAG 2 cut(s) 565, 705
HaeII RGCGCY 3 cut(s) 48, 210, 419
HaeIII GGCC 5 cut(s) 140, 266, 272, 505, 701
HapII CCGG 7 cut(s) 6, 57, 210, 263, 269, 281, 330
HhaI GCGC 5 cut(s) 47, 92, 169, 209, 418
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 4 cut(s) 469, 697, 794, 820
Hin6I GCGC 5 cut(s) 45, 90, 167, 207, 416
HinP1I GCGC 5 cut(s) 45, 90, 167, 207, 416
HincII GTYRAC 1 cut(s) 750
HindII GTYRAC 1 cut(s) 750
HinfI GANTC 2 cut(s) 593, 622
HpaI GTTAAC 1 cut(s) 750
HpaII CCGG 7 cut(s) 6, 57, 210, 263, 269, 281, 330
HphI GGTGA 3 cut(s) 469, 508, 633
Hpy166II GTNNAC 1 cut(s) 750
Hpy188I TCNGA 2 cut(s) 435, 540
Hpy188III TCNNGA 3 cut(s) 6, 361, 374
Hpy8I GTNNAC 1 cut(s) 750
Hpy99I CGWCG 4 cut(s) 319, 322, 398, 427
HpyAV CCTTC 3 cut(s) 406, 691, 763
HpyCH4III ACNGT 4 cut(s) 218, 454, 533, 739
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 3 cut(s) 409, 614, 794
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 164, 173, 204, 227, 291, 415
HpyF3I CTNAG 2 cut(s) 507, 753
HpySE526I ACGT 1 cut(s) 345
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 4 cut(s) 469, 697, 794, 820
HspAI GCGC 5 cut(s) 45, 90, 167, 207, 416
KasI GGCGCC 1 cut(s) 206
Kpn2I TCCGGA 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 370
KspAI GTTAAC 1 cut(s) 750
KspI CCGCGG 1 cut(s) 522
Kzo9I GATC 2 cut(s) 370, 498
LmnI GCTCC 6 cut(s) 155, 163, 184, 226, 238, 283
Lsp1109I GCAGC 3 cut(s) 54, 207, 393
LweI GCATC 1 cut(s) 601
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 689, 803
MalI GATC 2 cut(s) 372, 500
MbiI CCGCTC 1 cut(s) 179
MboI GATC 2 cut(s) 370, 498
MboII GAAGA 3 cut(s) 452, 466, 527
MhlI GDGCHC 4 cut(s) 160, 223, 307, 390
MluCI AATT 3 cut(s) 512, 588, 715
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 2 cut(s) 587, 631
Mph1103I ATGCAT 1 cut(s) 616
MroI TCCGGA 1 cut(s) 5
MseI TTAA 3 cut(s) 741, 749, 762
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 3 cut(s) 198, 384, 521
MspI CCGG 7 cut(s) 6, 57, 210, 263, 269, 281, 330
MspR9I CCNGG 6 cut(s) 57, 137, 263, 269, 282, 330
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 3 cut(s) 167, 230, 521
MwoI GCNNNNNNNGC 7 cut(s) 42, 164, 173, 204, 227, 291, 415
NarI GGCGCC 1 cut(s) 207
NciI CCSGG 5 cut(s) 57, 263, 269, 282, 330
NdeII GATC 2 cut(s) 370, 498
NlaIII CATG 4 cut(s) 469, 697, 794, 820
NlaIV GGNNCC 6 cut(s) 208, 234, 267, 279, 312, 339
NmeAIII GCCGAG 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 689
NsiI ATGCAT 1 cut(s) 616
OliI CACNNNNGTG 1 cut(s) 521
PaqCI CACCTGC 1 cut(s) 652
PceI AGGCCT 1 cut(s) 140
Pfl23II CGTACG 2 cut(s) 150, 225
PleI GAGTC 2 cut(s) 587, 630
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 2 cut(s) 587, 630
Psp124BI GAGCTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspLI CGTACG 2 cut(s) 150, 225
PspN4I GGNNCC 6 cut(s) 208, 234, 267, 279, 312, 339
PspPI GGNCC 3 cut(s) 265, 337, 503
RsaI GTAC 4 cut(s) 152, 227, 334, 428
RsaNI GTAC 4 cut(s) 151, 226, 333, 427
RseI CAYNNNNRTG 1 cut(s) 521
SacI GAGCTC 1 cut(s) 160
SacII CCGCGG 1 cut(s) 522
SaqAI TTAA 3 cut(s) 741, 749, 762
Sau3AI GATC 2 cut(s) 370, 498
Sau96I GGNCC 3 cut(s) 265, 337, 503
SchI GAGTC 2 cut(s) 587, 631
ScrFI CCNGG 6 cut(s) 57, 137, 263, 269, 282, 330
SduI GDGCHC 4 cut(s) 160, 223, 307, 390
SetI ASST 7 cut(s) 97, 160, 348, 440, 446, 646, 691
SfaNI GCATC 1 cut(s) 601
SfoI GGCGCC 1 cut(s) 208
Sfr303I CCGCGG 1 cut(s) 522
SgrBI CCGCGG 1 cut(s) 522
SinI GGWCC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 3 cut(s) 512, 588, 715
SseBI AGGCCT 1 cut(s) 140
SspDI GGCGCC 1 cut(s) 206
SspI AATATT 1 cut(s) 555
SstI GAGCTC 1 cut(s) 160
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 6 cut(s) 55, 135, 261, 267, 280, 328
TaaI ACNGT 4 cut(s) 218, 454, 533, 739
TaiI ACGT 1 cut(s) 348
TaqI TCGA 3 cut(s) 393, 567, 723
TasI AATT 3 cut(s) 512, 588, 715
TauI GCSGC 7 cut(s) 74, 107, 179, 201, 233, 252, 255
Tru1I TTAA 3 cut(s) 741, 749, 762
Tru9I TTAA 3 cut(s) 741, 749, 762
TscAI CASTG 1 cut(s) 790
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 3 cut(s) 42, 195, 381
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 4 cut(s) 446, 709, 710, 805
TspGWI ACGGA 5 cut(s) 168, 204, 213, 303, 350
TspRI CASTG 1 cut(s) 790
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 1 cut(s) 512
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.