Rh1BG131900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000268
Physical Location & Seq
Forward (+)
22105800 .. 22114472
8673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG131900.1

Sequence Viewer

Length: 963 bp
ATGGGTGTACCAGAAGGAGGAACGAATATAGATTTCATTGCCTCGAGTGATGTCAACTCTGATGAGAACATGCGCCGGGATTTTTTTGTTGGAAAATCTGAGAGCATATCAATTCCTAACCTATTACAGAGGTTAGATGACACAGCAGATGACAATTTCAGAAGACGTGAGCATGAAGTGGGAGATGCATCTGGTTTGAAAAATGATATAGAATCTTTGAAGAATGTTGTTTGTAATATTGAGAAATCAGTTGATGAGCTGAAAGGTATTGTTTGTACCATTCTTCCAAATGCTGTAGAAGAGGTGAAATGTGTTTTTAGAAGTAACACGTTAACAAAACAGTTGGAAGATCTAAAACAAGAATTTTTGAAAGCCACAAATGAACTAAAAGAGGGTGGGAAGCAGCTTAAAGAGAAAGTGGTACAAAGTGATCATACCAATGATGTCAATGCAAAGGATGATGTACATGATGTTCAACAGAATACACACATATTTGAGTCACCATATGTGAAGGAAGACTTAGTTGCTTCTTCATGTCATCTATCGAGCTACGTTGAGTTACCAAATATCAAGGCCAAGGCTAGGGAACTTAGCAATAAAAAGAATGAGGTCTCATCAAATGATATTAGTCCCAAGAATCTTCGACGCACTGTTGAAAGAAAGCCTGGCCACCAAATCTCAAGTCCATTTGTACAGTTGGAAATGATGGGAAATAAAATAGATCTTATAACTGCAAAATTAATGGAGGATAAGCCAAGAAAACTGCAAGATATTGGTCCTTTCACAGGGTGTCGTGGTCTTTATGATGACGACGTATATTTGATTGCATTTGTATTTTTGGAGACGGAAGATGTGGACTATAAAGACCACCTCAAACTCTTCGCCGACAACTCTAGATCGATCAAGACCAAGCTTACAGTAATCAATGATAGCATTGGAGGGCAGAACTTCAAGTTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

36.09

Weight (kDa)

5.26

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 728
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 1 cut(s) 362
AdeI CACNNNGTG 1 cut(s) 789
AfaI GTAC 5 cut(s) 9, 277, 423, 465, 693
AfiI CCNNNNNNNGG 3 cut(s) 17, 582, 785
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 6 cut(s) 199, 220, 370, 476, 656, 952
AjiI CACGTC 1 cut(s) 167
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 4 cut(s) 259, 406, 549, 913
AluI AGCT 4 cut(s) 259, 406, 549, 913
Alw26I GTCTC 2 cut(s) 616, 836
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 2 cut(s) 573, 667
ApeKI GCWGC 1 cut(s) 403
ApoI RAATTY 1 cut(s) 362
ArsI GACNNNNNNTTYG 2 cut(s) 667, 699
AseI ATTAAT 1 cut(s) 740
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 316, 492
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 776
BalI TGGCCA 1 cut(s) 669
BbsI GAAGAC 2 cut(s) 169, 522
BbvI GCAGC 1 cut(s) 415
BccI CCATC 1 cut(s) 700
BciT130I CCWGG 1 cut(s) 666
BclI TGATCA 1 cut(s) 430
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 616, 836
BfaI CTAG 2 cut(s) 582, 894
BfmI CTRYAG 1 cut(s) 294
BglII AGATCT 2 cut(s) 349, 721
BisI GCNGC 1 cut(s) 404
BlsI GCNGC 1 cut(s) 405
Bme1390I CCNGG 2 cut(s) 77, 666
Bme18I GGWCC 1 cut(s) 776
BmeT110I CYCGRG 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 776
BmrFI CCNGG 2 cut(s) 77, 666
BmsI GCATC 2 cut(s) 175, 197
BpiI GAAGAC 2 cut(s) 169, 522
BpuEI CTTGAG 1 cut(s) 664
BpuMI CCSGG 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 899
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 1 cut(s) 576
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 582, 785
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 666
BseCI ATCGAT 1 cut(s) 899
BseDI CCNNGG 1 cut(s) 576
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 3 cut(s) 17, 582, 785
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 415
BshFI GGCC 2 cut(s) 575, 669
BshVI ATCGAT 1 cut(s) 899
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 615
BslI CCNNNNNNNGG 3 cut(s) 17, 582, 785
BsmAI GTCTC 2 cut(s) 616, 836
BsmBI CGTCTC 1 cut(s) 836
BsmFI GGGAC 1 cut(s) 615
BsnI GGCC 2 cut(s) 575, 669
Bso31I GGTCTC 1 cut(s) 616
BsoBI CYCGRG 1 cut(s) 43
Bsp1407I TGTACA 2 cut(s) 463, 691
Bsp143I GATC 5 cut(s) 349, 430, 721, 896, 900
BspANI GGCC 2 cut(s) 575, 669
BspCNI CTCAG 1 cut(s) 91
BspDI ATCGAT 1 cut(s) 899
BspTNI GGTCTC 1 cut(s) 616
BsrDI GCAATG 1 cut(s) 36
BsrGI TGTACA 2 cut(s) 463, 691
BssECI CCNNGG 1 cut(s) 576
BssMI GATC 5 cut(s) 349, 430, 721, 896, 900
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 4 cut(s) 342, 652, 696, 919
Bst6I CTCTTC 2 cut(s) 294, 884
BstAUI TGTACA 2 cut(s) 463, 691
BstDEI CTNAG 3 cut(s) 99, 520, 590
BstENI CCTNNNNNAGG 1 cut(s) 783
BstF5I GGATG 1 cut(s) 463
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 5 cut(s) 352, 433, 724, 899, 903
BstMAI GTCTC 2 cut(s) 616, 836
BstMBI GATC 5 cut(s) 349, 430, 721, 896, 900
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 75, 664
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 415
BstV2I GAAGAC 2 cut(s) 169, 522
BstX2I RGATCY 2 cut(s) 349, 721
BstYI RGATCY 2 cut(s) 349, 721
Bsu15I ATCGAT 1 cut(s) 899
BsuRI GGCC 2 cut(s) 575, 669
BsuTUI ATCGAT 1 cut(s) 899
BtrI CACGTC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 648
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 776
ClaI ATCGAT 1 cut(s) 899
CseI GACGC 1 cut(s) 654
Csp6I GTAC 5 cut(s) 8, 276, 422, 464, 692
CviAII CATG 4 cut(s) 70, 173, 467, 534
CviQI GTAC 5 cut(s) 8, 276, 422, 464, 692
DdeI CTNAG 3 cut(s) 99, 520, 590
DpnI GATC 5 cut(s) 351, 432, 723, 898, 902
DpnII GATC 5 cut(s) 349, 430, 721, 896, 900
DraIII CACNNNGTG 1 cut(s) 789
EaeI YGGCCR 1 cut(s) 667
Eam1104I CTCTTC 2 cut(s) 294, 884
EarI CTCTTC 2 cut(s) 294, 884
Eco130I CCWWGG 1 cut(s) 576
Eco31I GGTCTC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 776
Eco88I CYCGRG 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 783
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 576
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 576
Esp3I CGTCTC 1 cut(s) 836
FaeI CATG 4 cut(s) 73, 176, 470, 537
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 1 cut(s) 615
FatI CATG 4 cut(s) 69, 172, 466, 533
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 430
Fnu4HI GCNGC 1 cut(s) 404
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 404
FspBI CTAG 2 cut(s) 582, 894
GlaI GCGC 1 cut(s) 74
GluI GCNGC 1 cut(s) 404
HaeIII GGCC 2 cut(s) 575, 669
HapII CCGG 1 cut(s) 76
HgaI GACGC 1 cut(s) 654
HhaI GCGC 1 cut(s) 75
Hin1II CATG 4 cut(s) 73, 176, 470, 537
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 2 cut(s) 55, 333
HindII GTYRAC 2 cut(s) 55, 333
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 3 cut(s) 212, 497, 637
HpaI GTTAAC 1 cut(s) 333
HpaII CCGG 1 cut(s) 76
HphI GGTGA 2 cut(s) 316, 492
Hpy166II GTNNAC 4 cut(s) 8, 55, 333, 856
Hpy188I TCNGA 3 cut(s) 61, 100, 161
Hpy188III TCNNGA 2 cut(s) 894, 904
Hpy8I GTNNAC 4 cut(s) 8, 55, 333, 856
Hpy99I CGWCG 2 cut(s) 648, 815
HpyAV CCTTC 2 cut(s) 8, 505
HpyCH4III ACNGT 4 cut(s) 342, 652, 696, 919
HpyCH4IV ACGT 4 cut(s) 166, 329, 552, 813
HpyCH4V TGCA 6 cut(s) 188, 452, 734, 766, 827, 958
HpyF3I CTNAG 3 cut(s) 99, 520, 590
HpySE526I ACGT 4 cut(s) 166, 329, 552, 813
Hsp92II CATG 4 cut(s) 73, 176, 470, 537
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 430
KspAI GTTAAC 1 cut(s) 333
Kzo9I GATC 5 cut(s) 349, 430, 721, 896, 900
LpnPI CCDG 6 cut(s) 24, 89, 177, 651, 678, 771
Lsp1109I GCAGC 1 cut(s) 415
LweI GCATC 2 cut(s) 175, 197
MaeI CTAG 2 cut(s) 582, 894
MaeII ACGT 4 cut(s) 166, 329, 552, 813
MaeIII GTNAC 3 cut(s) 323, 498, 558
MalI GATC 5 cut(s) 351, 432, 723, 898, 902
MboI GATC 5 cut(s) 349, 430, 721, 896, 900
MflI RGATCY 2 cut(s) 349, 721
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 4 cut(s) 111, 154, 362, 737
MluNI TGGCCA 1 cut(s) 669
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 3 cut(s) 70, 324, 678
MnlI CCTC 9 cut(s) 11, 52, 123, 295, 385, 601, 739, 881, 932
Mox20I TGGCCA 1 cut(s) 669
Mph1103I ATGCAT 1 cut(s) 190
MscI TGGCCA 1 cut(s) 669
MseI TTAA 3 cut(s) 332, 408, 740
MslI CAYNNNNRTG 1 cut(s) 438
Msp20I TGGCCA 1 cut(s) 669
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 2 cut(s) 77, 666
MvaI CCWGG 1 cut(s) 666
NciI CCSGG 1 cut(s) 77
NdeI CATATG 1 cut(s) 505
NdeII GATC 5 cut(s) 349, 430, 721, 896, 900
NlaIII CATG 4 cut(s) 73, 176, 470, 537
NmuCI GTSAC 1 cut(s) 498
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 43
PfeI GAWTC 2 cut(s) 212, 637
PkrI GCNGC 1 cut(s) 405
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PshBI ATTAAT 1 cut(s) 740
PsiI TTATAA 1 cut(s) 728
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspPI GGNCC 1 cut(s) 776
PspXI VCTCGAGB 1 cut(s) 43
PsrI GAACNNNNNNTAC 2 cut(s) 456, 488
PsuI RGATCY 2 cut(s) 349, 721
RsaI GTAC 5 cut(s) 9, 277, 423, 465, 693
RsaNI GTAC 5 cut(s) 8, 276, 422, 464, 692
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 3 cut(s) 332, 408, 740
SatI GCNGC 1 cut(s) 404
Sau3AI GATC 5 cut(s) 349, 430, 721, 896, 900
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 2 cut(s) 77, 666
SfaNI GCATC 2 cut(s) 175, 197
SfcI CTRYAG 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 43
SinI GGWCC 1 cut(s) 776
SlaI CTCGAG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 43, 679
SmoI CTYRAG 2 cut(s) 43, 679
Sse9I AATT 4 cut(s) 111, 154, 362, 737
SspI AATATT 1 cut(s) 238
SspMI CTAG 2 cut(s) 582, 894
StyD4I CCNGG 2 cut(s) 75, 664
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 4 cut(s) 342, 652, 696, 919
TaiI ACGT 4 cut(s) 169, 332, 555, 816
TaqI TCGA 4 cut(s) 44, 545, 643, 899
TasI AATT 4 cut(s) 111, 154, 362, 737
TatI WGTACW 2 cut(s) 463, 691
TfiI GAWTC 2 cut(s) 212, 637
Tru1I TTAA 3 cut(s) 332, 408, 740
Tru9I TTAA 3 cut(s) 332, 408, 740
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 1 cut(s) 498
TseI GCWGC 1 cut(s) 403
Tsp45I GTSAC 1 cut(s) 498
TspDTI ATGAA 4 cut(s) 25, 189, 396, 522
TspGWI ACGGA 1 cut(s) 860
TspRI CASTG 1 cut(s) 655
VpaK11BI GGWCC 1 cut(s) 776
VspI ATTAAT 1 cut(s) 740
XagI CCTNNNNNAGG 1 cut(s) 783
XapI RAATTY 1 cut(s) 362
XbaI TCTAGA 1 cut(s) 893
XceI RCATGY 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 43
XspI CTAG 2 cut(s) 582, 894
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.