Rh7BG307000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000268
Physical Location & Seq
Forward (+)
29409121 .. 29410723
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG307000.1

Sequence Viewer

Length: 1434 bp
ATGATGGCGGAATCGAAAGTAATAAAAAGCAACAGTAAATTAAAGAATAAAACAGACGACAAAAAGGAACAGAAAGTAATTGTTGGGCAATTTGCTTTCAACCAATACCTAAAAATCCAAGCGGATGAGTTGATTGCTTGCGGTAAGAATGTGAAGAAAGATAATGAGTTTAAGAAATTGGTGGCTTCTAAGTGGCATACACTCACGCCTACTGAAAAAGCCAAGTACAGTATTCCAGGCCCTGATGTTTCATCTGGAATTACGAAGAAAAGTAGGAATACATCTAAATCCTCAGCTACCATATCCACTCGATGTAGTCCACACCAGTTTCAACAAGTTGTTTCTAAATTTTCTGGGGAACAGATTGCAGCAATAACTGAATTGGGCTTTGGTACATTAGTGCAATTGTCATGCACACGAGTACGCCGAGATTTATGTCGATTTTTGATTGATAAGTTTGACACTGAGGAGTGTTTGATTGAGCTGCATGGTAAGAGTATGAAAGTGAGTTCTTTAGATTTTAAACAGATTATGAGTGTGCCTGAAGGAGGAACAGATGTAGACTTCAGCGGCTCAATTGAAGACCCTGACATGAAACCATTGGTTGATTATTATGTCGGAAATTCTGGGTATATAGAAATTTCAGACATAATTGCAAAGTTAGATGGAGCAAACGTAGTAGATGATCACTTTGGAGTCAGCTTCATTCTGTTGGCATTGGGAACCTTGCTTTGCCCAAATACATCAACACATCTCAATCCAAAGTATCTTCTTGCATTGAAGAATCTGAAGAATATAAGAAGTATGAACTGGGAAAGTTTTTCATTTGAATTTCTATTGGAAAGTGTGCGGTTGTTCAAGCAGAATAAAGCAAAGTACATATCTGGATGTGTGTTGTTCTTCCAACTATATTATTATAATGTCATCGAATATGGAAGGGCACTTGTTGATTGTGAGAAGCCTTCAATTGCAGCTTGGGGAGAGGAGCAATCAGCAAAATTAATTAAATGGATATTGCAGAAAGGGGGTCATGAAAGTCCAAACATTCTGGTTTCCAAAGTTTATAATTCAAGTGAACAGAAACATGAGGCAGAAAATGTTGTTGCCCTTCGAGCTGATGTTGAATCTGTGAAGAGTACCATTATGCGTGTGGAAGAAAAGATTGATGAATTGGGAGGTCTTCTTAGAGGGATACAAGAAGGATTGTTCAAAGTAGTGAGACAAAATGGTGATCAGGATGTCAATATAAAAAGGGACGAGGCTAATGATACTATTAGGCAAAACCATCAAGAAAGTGATGATTTCAAAACTCAAAGTTCAAAAGAAGTTGAGGTTAATGACGAATCATCATGTCAAATACAAAGTGAGGACAACTCTGAGGCAGCACATCCTAAGGTATGTTTTGCATCAACTTCGTATTTGAATTTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

477

Amino Acids

53.54

Weight (kDa)

6.21

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 918, 1065
AccI GTMKAC 1 cut(s) 561
AciI CCGC 5 cut(s) 8, 122, 141, 570, 850
AcsI RAATTY 5 cut(s) 347, 622, 639, 830, 1423
AcuI CTGAAG 3 cut(s) 550, 564, 809
AfaI GTAC 5 cut(s) 227, 394, 423, 878, 1138
AfiI CCNNNNNNNGG 1 cut(s) 548
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 5 cut(s) 296, 484, 702, 974, 1115
AluI AGCT 5 cut(s) 296, 484, 702, 974, 1115
Alw26I GTCTC 1 cut(s) 1213
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 4 cut(s) 368, 484, 971, 1382
ApoI RAATTY 5 cut(s) 347, 622, 639, 830, 1423
AseI ATTAAT 1 cut(s) 1001
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 1241
AxyI CCTNAGG 1 cut(s) 1392
BaeGI GKGCMC 1 cut(s) 943
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 2 cut(s) 588, 1172
BbvCI CCTCAGC 1 cut(s) 292
BbvI GCAGC 4 cut(s) 380, 471, 983, 1394
BccI CCATC 2 cut(s) 659, 1293
BcgI CGANNNNNNTGC 2 cut(s) 1395, 1429
BciT130I CCWGG 1 cut(s) 237
BciVI GTATCC 1 cut(s) 1185
BclI TGATCA 2 cut(s) 685, 1231
BcoDI GTCTC 1 cut(s) 1213
BfuI GTATCC 1 cut(s) 1185
BisI GCNGC 5 cut(s) 369, 485, 571, 972, 1383
BlsI GCNGC 5 cut(s) 370, 486, 572, 973, 1384
Bme1390I CCNGG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 724
BmrFI CCNGG 1 cut(s) 237
BmrI ACTGGG 1 cut(s) 820
BmsI GCATC 1 cut(s) 1415
BmuI ACTGGG 1 cut(s) 820
BpiI GAAGAC 2 cut(s) 588, 1172
BplI GAGNNNNNCTC 2 cut(s) 1358, 1390
Bpu10I CCTNAGC 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse1I ACTGG 2 cut(s) 325, 815
Bse21I CCTNAGG 1 cut(s) 1392
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 4 cut(s) 130, 893, 1243, 1387
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMII CTCAG 3 cut(s) 306, 456, 1368
BseNI ACTGG 2 cut(s) 325, 815
BseRI GAGGAG 2 cut(s) 482, 998
BseSI GKGCMC 1 cut(s) 943
BseXI GCAGC 4 cut(s) 380, 471, 983, 1394
BshFI GGCC 1 cut(s) 240
BslFI GGGAC 1 cut(s) 1268
BslI CCNNNNNNNGG 1 cut(s) 548
BsmAI GTCTC 1 cut(s) 1213
BsmFI GGGAC 1 cut(s) 1268
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 943
Bsp143I GATC 3 cut(s) 685, 1231, 1428
BspACI CCGC 5 cut(s) 8, 122, 141, 570, 850
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 3 cut(s) 305, 457, 1369
BspHI TCATGA 1 cut(s) 1030
BspLI GGNNCC 1 cut(s) 724
BsrI ACTGG 2 cut(s) 325, 815
BssMI GATC 3 cut(s) 685, 1231, 1428
BssSI CACGAG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 35, 230
Bst6I CTCTTC 1 cut(s) 1127
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 6 cut(s) 189, 292, 465, 1184, 1377, 1392
BstENI CCTNNNNNAGG 1 cut(s) 546
BstF5I GGATG 4 cut(s) 130, 893, 1243, 1387
BstKTI GATC 3 cut(s) 688, 1234, 1431
BstMAI GTCTC 1 cut(s) 1213
BstMBI GATC 3 cut(s) 685, 1231, 1428
BstMWI GCNNNNNNNGC 1 cut(s) 1112
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstSLI GKGCMC 1 cut(s) 943
BstV1I GCAGC 4 cut(s) 380, 471, 983, 1394
BstV2I GAAGAC 2 cut(s) 588, 1172
Bsu36I CCTNAGG 1 cut(s) 1392
BsuI GTATCC 1 cut(s) 1185
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 4 cut(s) 130, 893, 1243, 1387
BtsIMutI CAGTG 1 cut(s) 462
Cac8I GCNNGC 1 cut(s) 139
CaiI CAGNNNCTG 1 cut(s) 242
CciI TCATGA 1 cut(s) 1030
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 5 cut(s) 226, 393, 422, 877, 1137
CviAII CATG 6 cut(s) 411, 488, 592, 1031, 1085, 1350
CviQI GTAC 5 cut(s) 226, 393, 422, 877, 1137
DdeI CTNAG 6 cut(s) 189, 292, 465, 1184, 1377, 1392
DpnI GATC 3 cut(s) 687, 1233, 1430
DpnII GATC 3 cut(s) 685, 1231, 1428
DraI TTTAAA 1 cut(s) 523
Eam1104I CTCTTC 1 cut(s) 1127
EarI CTCTTC 1 cut(s) 1127
EciI GGCGGA 1 cut(s) 23
Eco57I CTGAAG 3 cut(s) 550, 564, 809
Eco81I CCTNAGG 1 cut(s) 1392
EcoNI CCTNNNNNAGG 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 6 cut(s) 414, 491, 595, 1034, 1088, 1353
FaqI GGGAC 1 cut(s) 1268
FatI CATG 6 cut(s) 410, 487, 591, 1030, 1084, 1349
FbaI TGATCA 2 cut(s) 685, 1231
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 5 cut(s) 369, 485, 571, 972, 1383
FokI GGATG 4 cut(s) 137, 900, 1250, 1374
Fsp4HI GCNGC 5 cut(s) 369, 485, 571, 972, 1383
GluI GCNGC 5 cut(s) 369, 485, 571, 972, 1383
HaeIII GGCC 1 cut(s) 240
Hin1II CATG 6 cut(s) 414, 491, 595, 1034, 1088, 1353
HinfI GANTC 5 cut(s) 11, 696, 784, 1124, 1343
HphI GGTGA 1 cut(s) 1241
Hpy166II GTNNAC 3 cut(s) 320, 562, 1076
Hpy188I TCNGA 4 cut(s) 620, 646, 789, 1378
Hpy188III TCNNGA 5 cut(s) 255, 885, 1031, 1235, 1289
Hpy8I GTNNAC 3 cut(s) 320, 562, 1076
HpyAV CCTTC 5 cut(s) 539, 930, 972, 1118, 1193
HpyCH4III ACNGT 2 cut(s) 35, 230
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 9 cut(s) 368, 403, 414, 487, 656, 776, 971, 1018, 1406
HpyF10VI GCNNNNNNNGC 1 cut(s) 1112
HpyF3I CTNAG 6 cut(s) 189, 292, 465, 1184, 1377, 1392
HpySE526I ACGT 1 cut(s) 675
Hsp92II CATG 6 cut(s) 414, 491, 595, 1034, 1088, 1353
Ksp22I TGATCA 2 cut(s) 685, 1231
Kzo9I GATC 3 cut(s) 685, 1231, 1428
LmnI GCTCC 2 cut(s) 668, 985
Lsp1109I GCAGC 4 cut(s) 380, 471, 983, 1394
LweI GCATC 1 cut(s) 1415
MaeII ACGT 1 cut(s) 675
MalI GATC 3 cut(s) 687, 1233, 1430
MboI GATC 3 cut(s) 685, 1231, 1428
MfeI CAATTG 3 cut(s) 404, 576, 966
MhlI GDGCHC 1 cut(s) 943
MlyI GAGTC 1 cut(s) 705
MmeI TCCRAC 2 cut(s) 598, 928
MseI TTAA 6 cut(s) 41, 171, 522, 1001, 1005, 1335
MspA1I CMGCKG 1 cut(s) 570
MspR9I CCNGG 1 cut(s) 237
MunI CAATTG 3 cut(s) 404, 576, 966
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 1112
NdeII GATC 3 cut(s) 685, 1231, 1428
NlaIII CATG 6 cut(s) 414, 491, 595, 1034, 1088, 1353
NlaIV GGNNCC 1 cut(s) 724
NmeAIII GCCGAG 1 cut(s) 452
PacI TTAATTAA 1 cut(s) 1005
PagI TCATGA 1 cut(s) 1030
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PfeI GAWTC 4 cut(s) 11, 784, 1124, 1343
PkrI GCNGC 5 cut(s) 370, 486, 572, 973, 1384
PleI GAGTC 1 cut(s) 704
PpsI GAGTC 1 cut(s) 704
PshBI ATTAAT 1 cut(s) 1001
PsiI TTATAA 2 cut(s) 918, 1065
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 724
PspPI GGNCC 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 242
RsaI GTAC 5 cut(s) 227, 394, 423, 878, 1138
RsaNI GTAC 5 cut(s) 226, 393, 422, 877, 1137
SaqAI TTAA 6 cut(s) 41, 171, 522, 1001, 1005, 1335
SatI GCNGC 5 cut(s) 369, 485, 571, 972, 1383
Sau3AI GATC 3 cut(s) 685, 1231, 1428
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 705
ScrFI CCNGG 1 cut(s) 237
SduI GDGCHC 1 cut(s) 943
SfaNI GCATC 1 cut(s) 1415
SsiI CCGC 5 cut(s) 8, 122, 141, 570, 850
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 2 cut(s) 35, 230
TaiI ACGT 1 cut(s) 678
TaqI TCGA 5 cut(s) 14, 310, 439, 927, 1111
TatI WGTACW 2 cut(s) 225, 876
TauI GCSGC 1 cut(s) 573
TfiI GAWTC 4 cut(s) 11, 784, 1124, 1343
Tru1I TTAA 6 cut(s) 41, 171, 522, 1001, 1005, 1335
Tru9I TTAA 6 cut(s) 41, 171, 522, 1001, 1005, 1335
TscAI CASTG 1 cut(s) 469
TseI GCWGC 4 cut(s) 368, 484, 971, 1382
TspDTI ATGAA 8 cut(s) 240, 515, 608, 694, 813, 821, 1047, 1182
TspRI CASTG 1 cut(s) 469
VspI ATTAAT 1 cut(s) 1001
XagI CCTNNNNNAGG 1 cut(s) 546
XapI RAATTY 5 cut(s) 347, 622, 639, 830, 1423
XcmI CCANNNNNNNNNTGG 1 cut(s) 1147
XmiI GTMKAC 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.