Rorug02G0288400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000268
Physical Location & Seq
Forward (+)
31558953 .. 31560572
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0288400.1

Sequence Viewer

Length: 564 bp
ATGCGGTATAAGAGAGTTGTGGATCTTCATAACATGCTTGGAGGAGAGAATCATCATCATCTCCGTCAGCATCACCTTCGTTCTTCAATTTCTGAAGAAATGGAGCTGAAACCAGGTCTCTCAACTCTCGTCACCGACAGAGCTTCTGGAATTGTATATTTTCTCTGTGACGAGTCTGTGACTGTTTCATGTTTGGGATTGTGTCCTATAACTTTCTCCTCTGACTTCAATGCTGCTTTGCTTTTGGATGATAGGGGCTTGAAAGAGTCAGATGTTGATAGCTTTGTGGATGATGTTATCGTGAATGATAAACCATGGGCATCTGGAGCACAGGAGGTCTTGACTGGTTCTCACATTTTTGTGTTTGCCCATGGTAGTCGAGATCGTAGATGTGGTGTTTGTGGACCTGTTCTCATTGATAAATTCACAGAGGAGGCTGAATTGCGAAGACTGAAGGATCAGGTATTTGTTAGTCCATGTTCTCACATTGGGGGCCACAAGTATGCTGGGAACTTGATTATCTACAGCCCTGGTGCCAATGGAAAGATCACTGGTCACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.7

Weight (kDa)

6.1

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suc_Fer-like PF06999 86 - 182 4.4e-23 Sucrase/ferredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 533
AciI CCGC 1 cut(s) 4
AclWI GGATC 2 cut(s) 30, 465
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 2 cut(s) 114, 473
AgsI TTSAA 3 cut(s) 87, 229, 262
AjnI CCWGG 2 cut(s) 112, 529
AluBI AGCT 3 cut(s) 106, 143, 282
AluI AGCT 3 cut(s) 106, 143, 282
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 2 cut(s) 30, 465
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 422
AspS9I GGNCC 2 cut(s) 404, 493
AsuHPI GGTGA 2 cut(s) 65, 124
AvaII GGWCC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 454
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 2 cut(s) 114, 531
BcoDI GTCTC 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 523
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 2 cut(s) 114, 531
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 2 cut(s) 404, 493
BmiI GGNNCC 2 cut(s) 494, 535
BmrFI CCNGG 2 cut(s) 114, 531
BmsI GCATC 2 cut(s) 79, 329
BpiI GAAGAC 1 cut(s) 454
BpmI CTGGAG 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 3 cut(s) 314, 370, 529
Bse1I ACTGG 3 cut(s) 349, 556, 563
BseBI CCWGG 2 cut(s) 114, 531
BseDI CCNNGG 3 cut(s) 314, 370, 529
BseGI GGATG 2 cut(s) 253, 295
BseNI ACTGG 3 cut(s) 349, 556, 563
BseRI GAGGAG 3 cut(s) 57, 208, 446
BseXI GCAGC 1 cut(s) 220
BseYI CCCAGC 1 cut(s) 506
BshFI GGCC 1 cut(s) 495
BshNI GGYRCC 1 cut(s) 533
BsiHKAI GWGCWC 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 1 cut(s) 495
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 4 cut(s) 22, 382, 457, 546
Bsp19I CCATGG 2 cut(s) 314, 370
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 495
BspLI GGNNCC 2 cut(s) 494, 535
BspPI GGATC 2 cut(s) 30, 465
BspT107I GGYRCC 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 122
BsrI ACTGG 3 cut(s) 349, 556, 563
BssECI CCNNGG 3 cut(s) 314, 370, 529
BssMI GATC 4 cut(s) 22, 382, 457, 546
BssT1I CCWWGG 2 cut(s) 314, 370
Bst2UI CCWGG 2 cut(s) 114, 531
Bst4CI ACNGT 1 cut(s) 184
BstDSI CCRYGG 2 cut(s) 314, 370
BstF5I GGATG 2 cut(s) 253, 295
BstKTI GATC 4 cut(s) 25, 385, 460, 549
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 4 cut(s) 22, 382, 457, 546
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 2 cut(s) 114, 531
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 112, 529
BstSFI CTRYAG 1 cut(s) 523
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 454
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 1 cut(s) 495
BtgI CCRYGG 2 cut(s) 314, 370
BtsCI GGATG 2 cut(s) 253, 295
BtsIMutI CAGTG 2 cut(s) 549, 556
Cfr13I GGNCC 2 cut(s) 404, 493
CsiI ACCWGGT 1 cut(s) 112
CviAII CATG 5 cut(s) 34, 189, 315, 371, 477
CviJI RGCY 7 cut(s) 106, 143, 258, 282, 437, 495, 528
CviKI_1 RGCY 7 cut(s) 106, 143, 258, 282, 437, 495, 528
DpnI GATC 4 cut(s) 24, 384, 459, 548
DpnII GATC 4 cut(s) 22, 382, 457, 546
Eco130I CCWWGG 2 cut(s) 314, 370
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 2 cut(s) 114, 473
EcoRII CCWGG 2 cut(s) 112, 529
EcoT14I CCWWGG 2 cut(s) 314, 370
ErhI CCWWGG 2 cut(s) 314, 370
FaeI CATG 5 cut(s) 37, 192, 318, 374, 480
FatI CATG 5 cut(s) 33, 188, 314, 370, 476
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 260, 302
Fsp4HI GCNGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 234
GsaI CCCAGC 1 cut(s) 510
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 1 cut(s) 495
Hin1II CATG 5 cut(s) 37, 192, 318, 374, 480
HinfI GANTC 3 cut(s) 49, 173, 266
HphI GGTGA 2 cut(s) 65, 124
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 3 cut(s) 94, 223, 271
Hpy188III TCNNGA 5 cut(s) 147, 301, 324, 340, 380
Hpy8I GTNNAC 1 cut(s) 404
HpyAV CCTTC 2 cut(s) 86, 448
HpyCH4III ACNGT 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
Hsp92II CATG 5 cut(s) 37, 192, 318, 374, 480
Kzo9I GATC 4 cut(s) 22, 382, 457, 546
LmnI GCTCC 2 cut(s) 103, 326
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 2 cut(s) 79, 329
MabI ACCWGGT 1 cut(s) 112
MaeIII GTNAC 4 cut(s) 130, 167, 178, 554
MalI GATC 4 cut(s) 24, 384, 459, 548
MboI GATC 4 cut(s) 22, 382, 457, 546
MboII GAAGA 4 cut(s) 17, 75, 107, 459
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 4 cut(s) 87, 150, 422, 440
MlyI GAGTC 2 cut(s) 182, 275
MnlI CCTC 5 cut(s) 35, 229, 328, 424, 427
MslI CAYNNNNRTG 2 cut(s) 359, 501
MspR9I CCNGG 2 cut(s) 114, 531
MvaI CCWGG 2 cut(s) 114, 531
MwoI GCNNNNNNNGC 1 cut(s) 326
NcoI CCATGG 2 cut(s) 314, 370
NdeII GATC 4 cut(s) 22, 382, 457, 546
NlaIII CATG 5 cut(s) 37, 192, 318, 374, 480
NlaIV GGNNCC 2 cut(s) 494, 535
NmuCI GTSAC 4 cut(s) 130, 167, 178, 554
NspI RCATGY 1 cut(s) 37
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 2 cut(s) 181, 274
PpsI GAGTC 2 cut(s) 181, 274
Psp6I CCWGG 2 cut(s) 112, 529
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 2 cut(s) 112, 529
PspN4I GGNNCC 2 cut(s) 494, 535
PspPI GGNCC 2 cut(s) 404, 493
PsuI RGATCY 1 cut(s) 22
RseI CAYNNNNRTG 2 cut(s) 359, 501
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 4 cut(s) 22, 382, 457, 546
Sau96I GGNCC 2 cut(s) 404, 493
SchI GAGTC 2 cut(s) 182, 275
ScrFI CCNGG 2 cut(s) 114, 531
SduI GDGCHC 1 cut(s) 331
SetI ASST 8 cut(s) 78, 108, 118, 145, 284, 339, 409, 465
SexAI ACCWGGT 1 cut(s) 112
SfaNI GCATC 2 cut(s) 79, 329
SfcI CTRYAG 1 cut(s) 523
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 359, 501
Sse9I AATT 4 cut(s) 87, 150, 422, 440
SsiI CCGC 1 cut(s) 4
StyD4I CCNGG 2 cut(s) 112, 529
StyI CCWWGG 2 cut(s) 314, 370
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 379
TasI AATT 4 cut(s) 87, 150, 422, 440
TfiI GAWTC 1 cut(s) 49
TscAI CASTG 2 cut(s) 556, 563
TseFI GTSAC 4 cut(s) 130, 167, 178, 554
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 4 cut(s) 130, 167, 178, 554
TspDTI ATGAA 2 cut(s) 17, 177
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 2 cut(s) 556, 563
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 1 cut(s) 422
XceI RCATGY 1 cut(s) 37
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.