Rroxscaffold_4G00314090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000268
Physical Location & Seq
Forward (+)
37921305 .. 37932591
11287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314090.1

Sequence Viewer

Length: 639 bp
ATGAAATTCCTAGAGCCAGGGGGACTTGTTACCTCCGAGATGGAGTACATTGAGTTTGGTACGTTAATACAGGGTAGAGCAATTACGGCAGCCAAGAAAGGAGGTAATGATTTATTAGAATTTGCTGCCACGGCACCAAAGAGATTTATATTTAACCCCATCCTGGATCCAGATACTACCCCAAACCACTGGTTCTTCATTGTGATTAAATTAGCGAGAACGGATGTAGAGATATGGGACACTTACCCGAACCCTGCACGCACTATGGCTCGAAATGATCTTGTTTATTATGTGATTATAACTCGCGAAACTGAACTTCTTCTAATACGAACCTACAAGACGATCTTTATGGTTCTAAATTCCGTAAATCGTTGTGTGCAACTTGCCCTCTGGATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGATGAAGCTACTGGAAATAGTGTTGATCAACATCATGGCAAGAGCTGTTCACAAGTCGTGCAGAGAAAAGCCTCAACACTACAAGCAAGGGGTCGTGGTCGCCCTCGTGGTGCAAAGAATAAAAACTGTCGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.15

Weight (kDa)

9.51

Isoelectric Point (pI)

24.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
AccB1I GGYRCC 2 cut(s) 133, 467
AccII CGCG 1 cut(s) 306
AclWI GGATC 2 cut(s) 161, 174
AcsI RAATTY 3 cut(s) 5, 119, 358
AfaI GTAC 2 cut(s) 47, 61
AfiI CCNNNNNNNGG 2 cut(s) 163, 421
AgsI TTSAA 1 cut(s) 400
AjnI CCWGG 2 cut(s) 16, 162
AluBI AGCT 2 cut(s) 509, 546
AluI AGCT 2 cut(s) 509, 546
AlwI GGATC 2 cut(s) 161, 174
ApeKI GCWGC 2 cut(s) 89, 125
ApoI RAATTY 3 cut(s) 5, 119, 358
AseI ATTAAT 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 436
BamHI GGATCC 1 cut(s) 166
BanI GGYRCC 2 cut(s) 133, 467
BauI CACGAG 1 cut(s) 606
BbvI GCAGC 2 cut(s) 101, 112
BccI CCATC 3 cut(s) 34, 167, 458
BceAI ACGGC 2 cut(s) 102, 147
BciT130I CCWGG 2 cut(s) 18, 164
BclI TGATCA 1 cut(s) 526
BfaI CTAG 1 cut(s) 11
BisI GCNGC 2 cut(s) 90, 126
BlsI GCNGC 2 cut(s) 91, 127
Bme1390I CCNGG 2 cut(s) 18, 164
BmiI GGNNCC 3 cut(s) 135, 168, 469
BmrFI CCNGG 2 cut(s) 18, 164
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 17, 129
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 421
Bse1I ACTGG 2 cut(s) 194, 517
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 2 cut(s) 18, 164
BseDI CCNNGG 2 cut(s) 17, 129
BseGI GGATG 3 cut(s) 159, 229, 399
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 163, 421
BseNI ACTGG 2 cut(s) 194, 517
BseXI GCAGC 2 cut(s) 101, 112
BsgI GTGCAG 2 cut(s) 240, 581
Bsh1236I CGCG 1 cut(s) 306
BshNI GGYRCC 2 cut(s) 133, 467
BslFI GGGAC 2 cut(s) 36, 251
BslI CCNNNNNNNGG 2 cut(s) 163, 421
BsmFI GGGAC 2 cut(s) 36, 251
Bsp143I GATC 5 cut(s) 166, 277, 342, 480, 526
Bsp68I TCGCGA 1 cut(s) 306
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 3 cut(s) 135, 168, 469
BspPI GGATC 2 cut(s) 161, 174
BspT107I GGYRCC 2 cut(s) 133, 467
BsrI ACTGG 2 cut(s) 194, 517
BssECI CCNNGG 2 cut(s) 17, 129
BssMI GATC 5 cut(s) 166, 277, 342, 480, 526
BssSI CACGAG 1 cut(s) 606
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 18, 164
Bst4CI ACNGT 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 259
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 3 cut(s) 159, 229, 399
BstFNI CGCG 1 cut(s) 306
BstKTI GATC 5 cut(s) 169, 280, 345, 483, 529
BstMBI GATC 5 cut(s) 166, 277, 342, 480, 526
BstMWI GCNNNNNNNGC 2 cut(s) 86, 131
BstNI CCWGG 2 cut(s) 18, 164
BstSCI CCNGG 2 cut(s) 16, 162
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 101, 112
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 1 cut(s) 166
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 3 cut(s) 159, 229, 399
BtsIMutI CAGTG 1 cut(s) 187
BtuMI TCGCGA 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 259
Csp6I GTAC 2 cut(s) 46, 60
CviAII CATG 2 cut(s) 420, 536
CviJI RGCY 7 cut(s) 16, 92, 269, 440, 509, 546, 572
CviKI_1 RGCY 7 cut(s) 16, 92, 269, 440, 509, 546, 572
CviQI GTAC 2 cut(s) 46, 60
DpnI GATC 5 cut(s) 168, 279, 344, 482, 528
DpnII GATC 5 cut(s) 166, 277, 342, 480, 526
EcoRII CCWGG 2 cut(s) 16, 162
FaeI CATG 2 cut(s) 423, 539
FaiI YATR 8 cut(s) 149, 235, 266, 291, 299, 350, 421, 537
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 2 cut(s) 36, 251
FatI CATG 2 cut(s) 419, 535
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 2 cut(s) 90, 126
FokI GGATG 3 cut(s) 146, 236, 406
Fsp4HI GCNGC 2 cut(s) 90, 126
FspBI CTAG 1 cut(s) 11
GluI GCNGC 2 cut(s) 90, 126
Hin1II CATG 2 cut(s) 423, 539
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 4 cut(s) 170, 305, 391, 484
Hpy8I GTNNAC 1 cut(s) 551
HpyCH4III ACNGT 1 cut(s) 629
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 4 cut(s) 257, 379, 562, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 131
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 2 cut(s) 423, 539
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 5 cut(s) 166, 277, 342, 480, 526
Lsp1109I GCAGC 2 cut(s) 101, 112
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 28
MalI GATC 5 cut(s) 168, 279, 344, 482, 528
MboI GATC 5 cut(s) 166, 277, 342, 480, 526
MboII GAAGA 3 cut(s) 187, 311, 506
MflI RGATCY 1 cut(s) 166
MluCI AATT 7 cut(s) 5, 81, 119, 209, 358, 429, 498
MnlI CCTC 6 cut(s) 43, 95, 398, 430, 583, 615
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 4 cut(s) 65, 153, 207, 432
MspR9I CCNGG 2 cut(s) 18, 164
MvaI CCWGG 2 cut(s) 18, 164
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 86, 131
NdeII GATC 5 cut(s) 166, 277, 342, 480, 526
NlaIII CATG 2 cut(s) 423, 539
NlaIV GGNNCC 3 cut(s) 135, 168, 469
NruI TCGCGA 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 318
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 2 cut(s) 91, 127
PshBI ATTAAT 1 cut(s) 432
PsiI TTATAA 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 16, 162
PspGI CCWGG 2 cut(s) 16, 162
PspN4I GGNNCC 3 cut(s) 135, 168, 469
PsuI RGATCY 1 cut(s) 166
RruI TCGCGA 1 cut(s) 306
RsaI GTAC 2 cut(s) 47, 61
RsaNI GTAC 2 cut(s) 46, 60
SaqAI TTAA 4 cut(s) 65, 153, 207, 432
SatI GCNGC 2 cut(s) 90, 126
Sau3AI GATC 5 cut(s) 166, 277, 342, 480, 526
ScrFI CCNGG 2 cut(s) 18, 164
SetI ASST 6 cut(s) 35, 65, 106, 335, 511, 548
Sse9I AATT 7 cut(s) 5, 81, 119, 209, 358, 429, 498
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 16, 162
TaaI ACNGT 1 cut(s) 629
TaiI ACGT 1 cut(s) 65
TaqI TCGA 2 cut(s) 271, 631
TasI AATT 7 cut(s) 5, 81, 119, 209, 358, 429, 498
TatI WGTACW 1 cut(s) 45
Tru1I TTAA 4 cut(s) 65, 153, 207, 432
Tru9I TTAA 4 cut(s) 65, 153, 207, 432
TscAI CASTG 1 cut(s) 194
TseI GCWGC 2 cut(s) 89, 125
TspDTI ATGAA 4 cut(s) 17, 187, 465, 519
TspGWI ACGGA 2 cut(s) 236, 352
TspRI CASTG 1 cut(s) 194
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 3 cut(s) 5, 119, 358
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.