RLG00000017162

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000268
Physical Location & Seq
Forward (+)
13585057 .. 13586323
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017162

Sequence Viewer

Length: 1179 bp
ATGTCTTTGTTTAGGAAAATTCAAGCTGATGAGAAAAAGGCAAAGATAGATAATAAGTTCAGAAAAGAGGTTGCTTTTCAATGGCATACGTTGAACCCTAATCAGAAGGCCGAATATTTTGTTCCAAACTCGAATGATTCCAATGCAATTCCTAAGGTCAATAGTGATACTTTAGCAGACTCAAAATTCATGGCCACACGGTGTAGTCCGAAAAAGTTTCAAGATCTTGTTTCCAGATTTTCAGAAGATCAAATTACTGCAGCAAAGGGAATGGGATTTGGCGCCTTGTTGCAATTGTCCTGCACTAGAGTACGCCATTATTTGTGTGGCTTCTTGGTAGATAAGTTTGACACAGAAAATCGTTCAATTGAGTTGCATGGTAGGACAATGAGTATTAGTTCTTCGGAATTTCAACATATTATGGGTGTACCTGAAGGTGGAACGAATATAGATTTCATTGGCTCGAGTGATGACAACTTTGATATGAAGGTGCTCTGGGATTTTTTTGTTGGAAAATCTGACAGCATATCAATTCCAATCCTATTTCAGAGGCTAGATGAAGCAAAAACAGCAGATGACAATTTCAAAGTTGGTTTTATTTTATTAGCATTGGGTATCTTACTTTGTCCCACTACATCAACAAGCATTCATCCGAAGTATCTTCTGCCATTGAGAGATCCGAAGAAAATAAGACAATTAAATTGGGCAAGTTATATATTTGAATTTTTGGTGGACTGTGTGCGGTCTTTCAAGCAGAAGAAATCAAGATACATGTGCGGTTGTGTCCTCTTTTTACAAGTTTATTATTACAATATTGTTGCATATGGGAGAGCTCTTATAGATTATTCAAGGCCTCCTATTACTGTTTGGGGTGAAAAGGAGTCATCAAAATTAATTAAGTGGATCTCAAAAAAAGGAGGTTATGAAAGTCTTGATGTTAATCTAGTTCCCAAAATTGATATTGTGAAGACACATGAGCATGAAGTGGGAGATATGTATGCTTTGAAAAATGATGTAGAATCTTTGAAGAATGCTGTTTGTAATATTGACAAATCAGTTGACGAGCTGAAAGGTGTTGTTGGTACCATTCTTCCAAATGTTGTGGGAGAGCTAAAAGGTGTTTTTGGTAGTAATACGATGACAAACGCTTTGGGGGATTTGAAAGAGGAATTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

393

Amino Acids

44.38

Weight (kDa)

8.26

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1082
AccB1I GGYRCC 2 cut(s) 281, 1082
AciI CCGC 2 cut(s) 742, 777
AclWI GGATC 2 cut(s) 671, 911
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 5 cut(s) 18, 185, 407, 722, 1169
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 282
AdeI CACNNNGTG 1 cut(s) 201
AfaI GTAC 3 cut(s) 312, 429, 1084
AfiI CCNNNNNNNGG 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 771
AluBI AGCT 4 cut(s) 26, 833, 1066, 1111
AluI AGCT 4 cut(s) 26, 833, 1066, 1111
Alw21I GWGCWC 2 cut(s) 495, 835
AlwI GGATC 2 cut(s) 671, 911
Ama87I CYCGRG 1 cut(s) 463
AoxI GGCC 3 cut(s) 108, 192, 851
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 5 cut(s) 18, 185, 407, 722, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 1132, 1164
AseI ATTAAT 1 cut(s) 893
Asp718I GGTACC 1 cut(s) 1082
AspLEI GCGC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 884
AvaI CYCGRG 1 cut(s) 463
AxyI CCTNAGG 1 cut(s) 153
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 2 cut(s) 281, 1082
BanII GRGCYC 1 cut(s) 835
BarI GAAGNNNNNNTAC 2 cut(s) 385, 417
BbsI GAAGAC 1 cut(s) 974
Bbv12I GWGCWC 2 cut(s) 495, 835
BbvI GCAGC 1 cut(s) 272
BfaI CTAG 3 cut(s) 306, 554, 944
BfmI CTRYAG 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 285
BglII AGATCT 1 cut(s) 223
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 463
BmiI GGNNCC 2 cut(s) 283, 1084
BpiI GAAGAC 1 cut(s) 974
BsaBI GATNNNNATC 1 cut(s) 939
BsaHI GRCGYC 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse21I CCTNAGG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 939
BseGI GGATG 1 cut(s) 649
BseJI GATNNNNATC 1 cut(s) 939
BseLI CCNNNNNNNGG 1 cut(s) 437
BseXI GCAGC 1 cut(s) 272
BsgI GTGCAG 1 cut(s) 286
BshFI GGCC 3 cut(s) 110, 194, 853
BshNI GGYRCC 2 cut(s) 281, 1082
BsiHKAI GWGCWC 2 cut(s) 495, 835
BsiHKCI CYCGRG 1 cut(s) 463
BslFI GGGAC 1 cut(s) 612
BslI CCNNNNNNNGG 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 612
BsmI GAATGC 2 cut(s) 645, 1036
BsnI GGCC 3 cut(s) 110, 194, 853
BsoBI CYCGRG 1 cut(s) 463
Bsp1286I GDGCHC 2 cut(s) 495, 835
Bsp143I GATC 4 cut(s) 223, 247, 676, 903
BspACI CCGC 2 cut(s) 742, 777
BspANI GGCC 3 cut(s) 110, 194, 853
BspLI GGNNCC 2 cut(s) 283, 1084
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 2 cut(s) 671, 911
BspT107I GGYRCC 2 cut(s) 281, 1082
BssMI GATC 4 cut(s) 223, 247, 676, 903
BssNI GRCGYC 1 cut(s) 282
Bst4CI ACNGT 3 cut(s) 201, 737, 865
BstACI GRCGYC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 649
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 4 cut(s) 226, 250, 679, 906
BstMBI GATC 4 cut(s) 223, 247, 676, 903
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstNSI RCATGY 1 cut(s) 775
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 974
BstX2I RGATCY 3 cut(s) 223, 676, 903
BstYI RGATCY 3 cut(s) 223, 676, 903
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 3 cut(s) 110, 194, 853
BtsCI GGATG 1 cut(s) 649
CfoI GCGC 1 cut(s) 284
Csp6I GTAC 3 cut(s) 311, 428, 1083
CspCI CAANNNNNGTGG 2 cut(s) 1083, 1118
CviAII CATG 5 cut(s) 190, 377, 772, 974, 980
CviQI GTAC 3 cut(s) 311, 428, 1083
DdeI CTNAG 1 cut(s) 153
DinI GGCGCC 1 cut(s) 283
DpnI GATC 4 cut(s) 225, 249, 678, 905
DpnII GATC 4 cut(s) 223, 247, 676, 903
DraIII CACNNNGTG 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 833
Eco147I AGGCCT 1 cut(s) 853
Eco24I GRGCYC 1 cut(s) 835
Eco53kI GAGCTC 1 cut(s) 833
Eco57I CTGAAG 1 cut(s) 453
Eco81I CCTNAGG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 833
EcoT38I GRGCYC 1 cut(s) 835
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
FaeI CATG 5 cut(s) 193, 380, 775, 977, 983
FaqI GGGAC 1 cut(s) 612
FatI CATG 5 cut(s) 189, 376, 771, 973, 979
FauNDI CATATG 1 cut(s) 823
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 636
FriOI GRGCYC 1 cut(s) 835
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 3 cut(s) 306, 554, 944
GlaI GCGC 1 cut(s) 283
GluI GCNGC 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 3 cut(s) 110, 194, 853
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 5 cut(s) 193, 380, 775, 977, 983
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HinfI GANTC 4 cut(s) 137, 179, 881, 1019
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 3 cut(s) 428, 733, 1060
Hpy188I TCNGA 9 cut(s) 62, 105, 210, 244, 406, 520, 549, 654, 681
Hpy188III TCNNGA 4 cut(s) 221, 234, 765, 932
Hpy8I GTNNAC 3 cut(s) 428, 733, 1060
HpyAV CCTTC 3 cut(s) 100, 428, 481
HpyCH4III ACNGT 3 cut(s) 201, 737, 865
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 6 cut(s) 146, 260, 292, 303, 376, 821
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 5 cut(s) 193, 380, 775, 977, 983
HspAI GCGC 1 cut(s) 282
KasI GGCGCC 1 cut(s) 281
KpnI GGTACC 1 cut(s) 1086
Kzo9I GATC 4 cut(s) 223, 247, 676, 903
LpnPI CCDG 4 cut(s) 247, 313, 444, 481
Lsp1109I GCAGC 1 cut(s) 272
MaeI CTAG 3 cut(s) 306, 554, 944
MaeII ACGT 1 cut(s) 89
MalI GATC 4 cut(s) 225, 249, 678, 905
MboI GATC 4 cut(s) 223, 247, 676, 903
MboII GAAGA 8 cut(s) 257, 393, 653, 694, 769, 979, 1039, 1082
MfeI CAATTG 2 cut(s) 293, 366
MflI RGATCY 3 cut(s) 223, 676, 903
MhlI GDGCHC 2 cut(s) 495, 835
MlsI TGGCCA 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 194
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 2 cut(s) 173, 890
MmeI TCCRAC 1 cut(s) 490
MnlI CCTC 6 cut(s) 61, 543, 797, 864, 911, 1159
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
MseI TTAA 4 cut(s) 698, 893, 897, 939
MslI CAYNNNNRTG 1 cut(s) 978
Msp20I TGGCCA 1 cut(s) 194
MunI CAATTG 2 cut(s) 293, 366
Mva1269I GAATGC 2 cut(s) 645, 1036
MwoI GCNNNNNNNGC 1 cut(s) 569
NarI GGCGCC 1 cut(s) 282
NdeI CATATG 1 cut(s) 823
NdeII GATC 4 cut(s) 223, 247, 676, 903
NlaIII CATG 5 cut(s) 193, 380, 775, 977, 983
NlaIV GGNNCC 2 cut(s) 283, 1084
NspI RCATGY 1 cut(s) 775
PacI TTAATTAA 1 cut(s) 897
PaeR7I CTCGAG 1 cut(s) 463
PceI AGGCCT 1 cut(s) 853
PciI ACATGT 1 cut(s) 771
PctI GAATGC 2 cut(s) 645, 1036
PfeI GAWTC 2 cut(s) 137, 1019
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 2 cut(s) 173, 889
PluTI GGCGCC 1 cut(s) 285
PpsI GAGTC 2 cut(s) 173, 889
PscI ACATGT 1 cut(s) 771
PshBI ATTAAT 1 cut(s) 893
Psp124BI GAGCTC 1 cut(s) 835
PspN4I GGNNCC 2 cut(s) 283, 1084
PspXI VCTCGAGB 1 cut(s) 463
PstI CTGCAG 1 cut(s) 262
PsuI RGATCY 3 cut(s) 223, 676, 903
RsaI GTAC 3 cut(s) 312, 429, 1084
RsaNI GTAC 3 cut(s) 311, 428, 1083
RseI CAYNNNNRTG 1 cut(s) 978
SacI GAGCTC 1 cut(s) 835
SaqAI TTAA 4 cut(s) 698, 893, 897, 939
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 4 cut(s) 223, 247, 676, 903
SchI GAGTC 2 cut(s) 173, 890
SduI GDGCHC 2 cut(s) 495, 835
SfcI CTRYAG 1 cut(s) 258
SfoI GGCGCC 1 cut(s) 283
Sfr274I CTCGAG 1 cut(s) 463
SlaI CTCGAG 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 978
SmlI CTYRAG 1 cut(s) 463
SmoI CTYRAG 1 cut(s) 463
SseBI AGGCCT 1 cut(s) 853
SsiI CCGC 2 cut(s) 742, 777
SspDI GGCGCC 1 cut(s) 281
SspI AATATT 3 cut(s) 116, 814, 1045
SspMI CTAG 3 cut(s) 306, 554, 944
SstI GAGCTC 1 cut(s) 835
StuI AGGCCT 1 cut(s) 853
TaaI ACNGT 3 cut(s) 201, 737, 865
TaiI ACGT 1 cut(s) 92
TaqI TCGA 2 cut(s) 131, 464
TfiI GAWTC 2 cut(s) 137, 1019
Tru1I TTAA 4 cut(s) 698, 893, 897, 939
Tru9I TTAA 4 cut(s) 698, 893, 897, 939
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 7 cut(s) 178, 445, 500, 573, 638, 939, 996
VspI ATTAAT 1 cut(s) 893
XapI RAATTY 5 cut(s) 18, 185, 407, 722, 1169
XceI RCATGY 1 cut(s) 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 463
XspI CTAG 3 cut(s) 306, 554, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.