Rroxscaffold_1G00074780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000268
Physical Location & Seq
Reverse (-)
95639151 .. 95640453
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074780.1

Sequence Viewer

Length: 1173 bp
ATGCGCCGGGATGTTTTTGTTGGAAAATCTGATAGCATATCAATTCCTAACCTATTACGGAGGTTAGATGACACAGCAGATGACAATTTCAGAGTCAGTTTCATTTTATTAGCATTGGGTACCTTACTTTGTCCCACTACATCAACAAGCATCCATCCGAAGTATCTTCTGCCACTGAGAGATCCAAACAAAATAAGATATTTAAATTGGGCAAGTTATTCATTTGATTTTTTGGTGGACAGTGTGTGGTCTTTCAAGCAGAAAAAATCACGGTACATGTGCGGGTGCGTCATTTTTTTACAACTTTATTATTACAATATTATTGCACATGGGAGAGTTCTTATAGATTATTCAAAGCCACCTATTACTGTTTGGGGGGAAAAGGAGTCATCAAAATTAATTAAGTGGATCTCAAAAAAAGGAGGGTATGAAAGTCTTGATATTAATCTAGTTCCCAAATTTGATGTCATGAAGAGACGTGAGCATGAAGTGGGAGATGCATCTGGTTTGAAAAATGATATAGAATCTTTGAAGAATGTTGTTTGTAATATTGAGAAATCAGTTGATGAGCTGAAAGGTATTGTTTGTACCATTCTTCCAAATGCTGTAGAAGAGGTGAAATGTGTTTTTAGAAGTAACACGTTAACAAAACAGTTGGAAGATCTAAAACAAGAATTTTTGAAAGCCACAAATGAACTAAAAGAGGGTGGGAAGCAGCTTAAAGAGAAAGTGGTACAAAGTGATCATACCAATGATGTCAATGCAAAGGATGATGTACATGATGTTCAACAGAATACACACATATTTGAGTCACCATATGTGAAGGAAGATTTAGTTGCTTCTTCAAGTCATCTATCGAGCTACGTTGAGTTACCAAATATCAAGGCCAAGGCTAGGGAACTTAGCAATAAAAAGAATGAGGTCTCATCAAATGATATTAGTCCCAAGAATCTTCGACGCACTGTTGAAAGAAAGCCTGGCCACCAAATCTCAAGTCCATTTGTACAGTTGGAAATGATGGGAAATAAAATAGATCTTATAACTGCAAAATTTATGGAGGATAAGCCAAGAAAACTGCAAGATATTGGTCCTTTCACAGGGTGTCGTGATCTTTATGATGACGACGTATATTTGATTGCATTTGTATTTTTGGAGACGGAAGATGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

390

Amino Acids

44.67

Weight (kDa)

6.73

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1040
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 1 cut(s) 282
AclWI GGATC 2 cut(s) 176, 416
AcoI YGGCCR 1 cut(s) 979
AcsI RAATTY 3 cut(s) 458, 674, 1049
AdeI CACNNNGTG 1 cut(s) 1101
AfaI GTAC 6 cut(s) 121, 275, 589, 735, 777, 1005
AfiI CCNNNNNNNGG 2 cut(s) 894, 1097
AflIII ACRYGT 2 cut(s) 276, 639
AgsI TTSAA 8 cut(s) 256, 354, 511, 532, 682, 788, 846, 968
AjiI CACGTC 1 cut(s) 479
AjnI CCWGG 1 cut(s) 976
AluBI AGCT 3 cut(s) 571, 718, 861
AluI AGCT 3 cut(s) 571, 718, 861
Alw26I GTCTC 3 cut(s) 469, 928, 1148
AlwI GGATC 2 cut(s) 176, 416
AoxI GGCC 2 cut(s) 885, 979
ApeKI GCWGC 1 cut(s) 715
ApoI RAATTY 3 cut(s) 458, 674, 1049
ArsI GACNNNNNNTTYG 4 cut(s) 450, 482, 979, 1011
AseI ATTAAT 2 cut(s) 398, 444
Asp718I GGTACC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 1088
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 628, 804
AvaII GGWCC 1 cut(s) 1088
BalI TGGCCA 1 cut(s) 981
BanI GGYRCC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 727
BccI CCATC 2 cut(s) 162, 1012
BciT130I CCWGG 1 cut(s) 978
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 3 cut(s) 469, 928, 1148
BfaI CTAG 2 cut(s) 449, 894
BfmI CTRYAG 1 cut(s) 606
BglII AGATCT 2 cut(s) 661, 1033
BisI GCNGC 1 cut(s) 716
BlsI GCNGC 1 cut(s) 717
Bme1390I CCNGG 2 cut(s) 8, 978
Bme18I GGWCC 1 cut(s) 1088
BmgBI CACGTC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 1088
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 8, 978
BmsI GCATC 3 cut(s) 159, 487, 509
BpuEI CTTGAG 1 cut(s) 976
BpuMI CCSGG 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 928
BsaJI CCNNGG 1 cut(s) 888
Bsc4I CCNNNNNNNGG 2 cut(s) 894, 1097
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 1 cut(s) 978
BseDI CCNNGG 1 cut(s) 888
BseGI GGATG 4 cut(s) 16, 150, 154, 775
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 894, 1097
BseMII CTCAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 727
BshFI GGCC 2 cut(s) 887, 981
BshNI GGYRCC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 2 cut(s) 117, 927
BslI CCNNNNNNNGG 2 cut(s) 894, 1097
BsmAI GTCTC 3 cut(s) 469, 928, 1148
BsmBI CGTCTC 2 cut(s) 469, 1148
BsmFI GGGAC 2 cut(s) 117, 927
BsnI GGCC 2 cut(s) 887, 981
Bso31I GGTCTC 1 cut(s) 928
Bsp1407I TGTACA 2 cut(s) 775, 1003
Bsp143I GATC 6 cut(s) 181, 408, 661, 742, 1033, 1108
BspACI CCGC 1 cut(s) 282
BspANI GGCC 2 cut(s) 887, 981
BspCNI CTCAG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 2 cut(s) 176, 416
BspT107I GGYRCC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 928
BsrGI TGTACA 2 cut(s) 775, 1003
BssECI CCNNGG 1 cut(s) 888
BssMI GATC 6 cut(s) 181, 408, 661, 742, 1033, 1108
BssT1I CCWWGG 1 cut(s) 888
Bst2UI CCWGG 1 cut(s) 978
Bst4CI ACNGT 6 cut(s) 242, 273, 370, 654, 964, 1008
Bst6I CTCTTC 2 cut(s) 467, 606
BstAUI TGTACA 2 cut(s) 775, 1003
BstDEI CTNAG 2 cut(s) 176, 902
BstENI CCTNNNNNAGG 1 cut(s) 1095
BstF5I GGATG 4 cut(s) 16, 150, 154, 775
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 6 cut(s) 184, 411, 664, 745, 1036, 1111
BstMAI GTCTC 3 cut(s) 469, 928, 1148
BstMBI GATC 6 cut(s) 181, 408, 661, 742, 1033, 1108
BstNI CCWGG 1 cut(s) 978
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 6, 976
BstSFI CTRYAG 1 cut(s) 606
BstV1I GCAGC 1 cut(s) 727
BstX2I RGATCY 4 cut(s) 181, 408, 661, 1033
BstYI RGATCY 4 cut(s) 181, 408, 661, 1033
BsuRI GGCC 2 cut(s) 887, 981
BtrI CACGTC 1 cut(s) 479
BtsCI GGATG 4 cut(s) 16, 150, 154, 775
BtsIMutI CAGTG 3 cut(s) 173, 247, 960
CciI TCATGA 1 cut(s) 468
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 1088
CseI GACGC 2 cut(s) 277, 966
Csp6I GTAC 6 cut(s) 120, 274, 588, 734, 776, 1004
CviAII CATG 5 cut(s) 277, 329, 469, 485, 779
CviQI GTAC 6 cut(s) 120, 274, 588, 734, 776, 1004
DdeI CTNAG 2 cut(s) 176, 902
DpnI GATC 6 cut(s) 183, 410, 663, 744, 1035, 1110
DpnII GATC 6 cut(s) 181, 408, 661, 742, 1033, 1108
DraI TTTAAA 1 cut(s) 204
DraIII CACNNNGTG 1 cut(s) 1101
EaeI YGGCCR 1 cut(s) 979
Eam1104I CTCTTC 2 cut(s) 467, 606
EarI CTCTTC 2 cut(s) 467, 606
Eco130I CCWWGG 1 cut(s) 888
Eco31I GGTCTC 1 cut(s) 928
Eco47I GGWCC 1 cut(s) 1088
EcoNI CCTNNNNNAGG 1 cut(s) 1095
EcoRII CCWGG 1 cut(s) 976
EcoT14I CCWWGG 1 cut(s) 888
EcoT22I ATGCAT 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 888
Esp3I CGTCTC 2 cut(s) 469, 1148
FaeI CATG 5 cut(s) 280, 332, 472, 488, 782
FaqI GGGAC 2 cut(s) 117, 927
FatI CATG 5 cut(s) 276, 328, 468, 484, 778
FauI CCCGC 1 cut(s) 275
FauNDI CATATG 1 cut(s) 817
FbaI TGATCA 1 cut(s) 742
Fnu4HI GCNGC 1 cut(s) 716
FokI GGATG 4 cut(s) 23, 137, 141, 782
Fsp4HI GCNGC 1 cut(s) 716
FspBI CTAG 2 cut(s) 449, 894
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 716
HaeIII GGCC 2 cut(s) 887, 981
HapII CCGG 1 cut(s) 7
HgaI GACGC 2 cut(s) 277, 966
HhaI GCGC 1 cut(s) 6
Hin1II CATG 5 cut(s) 280, 332, 472, 488, 782
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HinfI GANTC 5 cut(s) 93, 386, 524, 809, 949
HpaI GTTAAC 1 cut(s) 645
HpaII CCGG 1 cut(s) 7
HphI GGTGA 2 cut(s) 628, 804
Hpy166II GTNNAC 2 cut(s) 238, 645
Hpy188I TCNGA 3 cut(s) 31, 92, 159
Hpy188III TCNNGA 3 cut(s) 437, 469, 1106
Hpy8I GTNNAC 2 cut(s) 238, 645
Hpy99I CGWCG 2 cut(s) 960, 1127
HpyAV CCTTC 1 cut(s) 817
HpyCH4III ACNGT 6 cut(s) 242, 273, 370, 654, 964, 1008
HpyCH4IV ACGT 4 cut(s) 478, 641, 864, 1125
HpyCH4V TGCA 6 cut(s) 326, 500, 764, 1046, 1078, 1139
HpyF3I CTNAG 2 cut(s) 176, 902
HpySE526I ACGT 4 cut(s) 478, 641, 864, 1125
Hsp92II CATG 5 cut(s) 280, 332, 472, 488, 782
HspAI GCGC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 742
KspAI GTTAAC 1 cut(s) 645
Kzo9I GATC 6 cut(s) 181, 408, 661, 742, 1033, 1108
LpnPI CCDG 5 cut(s) 20, 489, 963, 990, 1083
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 3 cut(s) 159, 487, 509
MaeI CTAG 2 cut(s) 449, 894
MaeII ACGT 4 cut(s) 478, 641, 864, 1125
MaeIII GTNAC 3 cut(s) 635, 810, 870
MalI GATC 6 cut(s) 183, 410, 663, 744, 1035, 1110
MboI GATC 6 cut(s) 181, 408, 661, 742, 1033, 1108
MflI RGATCY 4 cut(s) 181, 408, 661, 1033
MlsI TGGCCA 1 cut(s) 981
MluCI AATT 8 cut(s) 42, 85, 205, 395, 399, 458, 674, 1049
MluNI TGGCCA 1 cut(s) 981
MlyI GAGTC 3 cut(s) 102, 395, 818
MmeI TCCRAC 2 cut(s) 636, 990
MnlI CCTC 6 cut(s) 54, 416, 607, 697, 913, 1051
Mox20I TGGCCA 1 cut(s) 981
Mph1103I ATGCAT 1 cut(s) 502
MscI TGGCCA 1 cut(s) 981
MseI TTAA 6 cut(s) 203, 398, 402, 444, 644, 720
MslI CAYNNNNRTG 1 cut(s) 750
Msp20I TGGCCA 1 cut(s) 981
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 2 cut(s) 8, 978
MvaI CCWGG 1 cut(s) 978
NciI CCSGG 1 cut(s) 8
NdeI CATATG 1 cut(s) 817
NdeII GATC 6 cut(s) 181, 408, 661, 742, 1033, 1108
NlaIII CATG 5 cut(s) 280, 332, 472, 488, 782
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 810
NsiI ATGCAT 1 cut(s) 502
NspI RCATGY 1 cut(s) 280
PacI TTAATTAA 1 cut(s) 402
PagI TCATGA 1 cut(s) 468
PciI ACATGT 1 cut(s) 276
PfeI GAWTC 2 cut(s) 524, 949
PkrI GCNGC 1 cut(s) 717
PleI GAGTC 3 cut(s) 101, 394, 817
PpsI GAGTC 3 cut(s) 101, 394, 817
PscI ACATGT 1 cut(s) 276
PshBI ATTAAT 2 cut(s) 398, 444
PsiI TTATAA 1 cut(s) 1040
Psp6I CCWGG 1 cut(s) 976
PspGI CCWGG 1 cut(s) 976
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 1088
PsrI GAACNNNNNNTAC 2 cut(s) 768, 800
PsuI RGATCY 4 cut(s) 181, 408, 661, 1033
RsaI GTAC 6 cut(s) 121, 275, 589, 735, 777, 1005
RsaNI GTAC 6 cut(s) 120, 274, 588, 734, 776, 1004
RseI CAYNNNNRTG 1 cut(s) 750
SaqAI TTAA 6 cut(s) 203, 398, 402, 444, 644, 720
SatI GCNGC 1 cut(s) 716
Sau3AI GATC 6 cut(s) 181, 408, 661, 742, 1033, 1108
Sau96I GGNCC 1 cut(s) 1088
SchI GAGTC 3 cut(s) 102, 395, 818
ScrFI CCNGG 2 cut(s) 8, 978
SfaNI GCATC 3 cut(s) 159, 487, 509
SfcI CTRYAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 1088
SmiI ATTTAAAT 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 1 cut(s) 991
SmoI CTYRAG 1 cut(s) 991
Sse9I AATT 8 cut(s) 42, 85, 205, 395, 399, 458, 674, 1049
SsiI CCGC 1 cut(s) 282
SspI AATATT 2 cut(s) 319, 550
SspMI CTAG 2 cut(s) 449, 894
StyD4I CCNGG 2 cut(s) 6, 976
StyI CCWWGG 1 cut(s) 888
SwaI ATTTAAAT 1 cut(s) 204
TaaI ACNGT 6 cut(s) 242, 273, 370, 654, 964, 1008
TaiI ACGT 4 cut(s) 481, 644, 867, 1128
TaqI TCGA 2 cut(s) 857, 955
TasI AATT 8 cut(s) 42, 85, 205, 395, 399, 458, 674, 1049
TatI WGTACW 2 cut(s) 775, 1003
TfiI GAWTC 2 cut(s) 524, 949
Tru1I TTAA 6 cut(s) 203, 398, 402, 444, 644, 720
Tru9I TTAA 6 cut(s) 203, 398, 402, 444, 644, 720
TscAI CASTG 3 cut(s) 180, 247, 967
TseFI GTSAC 1 cut(s) 810
TseI GCWGC 1 cut(s) 715
Tsp45I GTSAC 1 cut(s) 810
TspDTI ATGAA 6 cut(s) 91, 210, 444, 485, 501, 708
TspGWI ACGGA 2 cut(s) 73, 1172
TspRI CASTG 3 cut(s) 180, 247, 967
VpaK11BI GGWCC 1 cut(s) 1088
VspI ATTAAT 2 cut(s) 398, 444
XagI CCTNNNNNAGG 1 cut(s) 1095
XapI RAATTY 3 cut(s) 458, 674, 1049
XceI RCATGY 1 cut(s) 280
XspI CTAG 2 cut(s) 449, 894
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.