RLG00000019098

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000268
Physical Location & Seq
Forward (+)
46261399 .. 46263367
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019098

Sequence Viewer

Length: 1029 bp
ATGTCACATGTTGATTGTTCAAAGCCTACAATTGCAGCTTGGGGAGAGGAACAGTCGAAAAAATTAATTAAATGGATATTGTGGAAAGGGGGCTATGAAAGTCCAAACAATCTGATTTCCAAAGTTCATAATTTAAGTGGACAGGAACATGAGGCAGAAGATGTTATTGCCCACCAAACTGATGTTGAATTAATAACAAGTACCATTATGCGTGTGGAGGAAAAGATTGATGAACTGGGAGGTCTTGTTGGATGGATAAAAGAAGAATTGTTCAAAGTAGTGAGAGAAGATGGTAATCGGGATGTCAGTATAAAAAGGGACGAGGCTAATCATGAAAGGAAGAATGTGGAACAGTCAACAAATGACACTATTGGGCAAAATCATCAGGAAAGTGATGATTTCAATATTCAAAGTTCAAAAGAAATTGAGGTTAATGACGAGTCATCATGTCAAATACATAGTGAGGACAACTCTAAGGCAGCACATCCTAAGGAAGCCAAGTTAAGCAATATCAGATCCGTTTGTGAAGCTTGGGATCGAATTACTGAGCTAAATGACAAATTGTTGCATGGGAGAACCCTTAATTTGAAGAGAATTGGTGAATTCAGGGGTTCTTTTGATTTTGGCGATGATGATTTTTTCCAAATAGATGATAATTTTTTAAACTGTTCTAATATGAGATGCTTAGAGCCTAGTCAATATGCCAAAGCATTTTTTTTAAAAGAAGGTGATGATTTGTCAAAATTTACTGCCAAAGCGAAAAAGAACAACATGATTGAGTTTTGGTACTTTGTATTTGAGAAATGCGAAAAGATTTTTATTCCCATCCTAGATGACGGTGTTAAAGGGAACCATTGGTTCCTGATGATATATCATTCTATGAACGAGCGTTTACCCATAGGTCTCTCCTTGTTGAAGCATCTTGACAACCAAGCACGCAACAATATTGCTGAAGCTGAACAAAAGTCACTACAAAAAGTTATAAGCAAGAAACTTGGGAACAAAGACACTGAAGACAGATCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

39.43

Weight (kDa)

5.41

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 983
AclWI GGATC 2 cut(s) 510, 543
AcsI RAATTY 2 cut(s) 602, 743
AcuI CTGAAG 1 cut(s) 972
AfaI GTAC 2 cut(s) 202, 788
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 8 cut(s) 21, 188, 274, 403, 410, 417, 589, 916
AluBI AGCT 4 cut(s) 38, 530, 550, 956
AluI AGCT 4 cut(s) 38, 530, 550, 956
Alw26I GTCTC 1 cut(s) 908
AlwI GGATC 2 cut(s) 510, 543
ApeKI GCWGC 2 cut(s) 35, 479
ApoI RAATTY 2 cut(s) 602, 743
AseI ATTAAT 2 cut(s) 65, 191
AsuHPI GGTGA 2 cut(s) 611, 740
AxyI CCTNAGG 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 1020
BbvI GCAGC 2 cut(s) 47, 491
BccI CCATC 3 cut(s) 246, 284, 833
BcoDI GTCTC 1 cut(s) 908
BfaI CTAG 2 cut(s) 693, 830
BisI GCNGC 2 cut(s) 36, 480
BlsI GCNGC 2 cut(s) 37, 481
BmiI GGNNCC 2 cut(s) 851, 860
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 2 cut(s) 671, 928
BmuI ACTGGG 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 1020
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BsaBI GATNNNNATC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 908
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse1I ACTGG 1 cut(s) 240
Bse21I CCTNAGG 1 cut(s) 489
Bse8I GATNNNNATC 1 cut(s) 294
BseGI GGATG 4 cut(s) 257, 307, 484, 825
BseJI GATNNNNATC 1 cut(s) 294
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 2 cut(s) 47, 491
BslFI GGGAC 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 908
BsmFI GGGAC 1 cut(s) 332
Bso31I GGTCTC 1 cut(s) 908
Bsp143I GATC 3 cut(s) 515, 535, 1019
BspCNI CTCAG 1 cut(s) 538
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 851, 860
BspPI GGATC 2 cut(s) 510, 543
BspTNI GGTCTC 1 cut(s) 908
BsrI ACTGG 1 cut(s) 240
BssMI GATC 3 cut(s) 515, 535, 1019
Bst4CI ACNGT 4 cut(s) 54, 354, 668, 839
Bst6I CTCTTC 1 cut(s) 584
BstC8I GCNNGC 1 cut(s) 937
BstDEI CTNAG 4 cut(s) 474, 489, 546, 685
BstF5I GGATG 4 cut(s) 257, 307, 484, 825
BstKTI GATC 3 cut(s) 518, 538, 1022
BstMAI GTCTC 1 cut(s) 908
BstMBI GATC 3 cut(s) 515, 535, 1019
BstNSI RCATGY 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 47, 491
BstV2I GAAGAC 1 cut(s) 1020
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
Bsu36I CCTNAGG 1 cut(s) 489
BtgZI GCGATG 1 cut(s) 642
BtsCI GGATG 4 cut(s) 257, 307, 484, 825
BtsIMutI CAGTG 1 cut(s) 1008
Cac8I GCNNGC 1 cut(s) 937
CciI TCATGA 1 cut(s) 331
Csp6I GTAC 2 cut(s) 201, 787
CviAII CATG 6 cut(s) 8, 149, 332, 447, 569, 772
CviJI RGCY 9 cut(s) 25, 38, 93, 326, 497, 530, 550, 691, 956
CviKI_1 RGCY 9 cut(s) 25, 38, 93, 326, 497, 530, 550, 691, 956
CviQI GTAC 2 cut(s) 201, 787
DdeI CTNAG 4 cut(s) 474, 489, 546, 685
DpnI GATC 3 cut(s) 517, 537, 1021
DpnII GATC 3 cut(s) 515, 535, 1019
DraI TTTAAA 2 cut(s) 663, 720
Eam1104I CTCTTC 1 cut(s) 584
EarI CTCTTC 1 cut(s) 584
Eco31I GGTCTC 1 cut(s) 908
Eco57I CTGAAG 1 cut(s) 972
Eco81I CCTNAGG 1 cut(s) 489
EcoRI GAATTC 1 cut(s) 602
FaeI CATG 6 cut(s) 11, 152, 335, 450, 572, 775
FaqI GGGAC 1 cut(s) 332
FatI CATG 6 cut(s) 7, 148, 331, 446, 568, 771
Fnu4HI GCNGC 2 cut(s) 36, 480
FokI GGATG 4 cut(s) 264, 314, 471, 812
Fsp4HI GCNGC 2 cut(s) 36, 480
FspBI CTAG 2 cut(s) 693, 830
GluI GCNGC 2 cut(s) 36, 480
Hin1II CATG 6 cut(s) 11, 152, 335, 450, 572, 775
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 1 cut(s) 440
HphI GGTGA 2 cut(s) 611, 740
Hpy166II GTNNAC 3 cut(s) 140, 357, 893
Hpy188I TCNGA 2 cut(s) 114, 515
Hpy188III TCNNGA 6 cut(s) 299, 332, 386, 862, 923, 1023
Hpy8I GTNNAC 3 cut(s) 140, 357, 893
HpyAV CCTTC 1 cut(s) 719
HpyCH4III ACNGT 4 cut(s) 54, 354, 668, 839
HpyCH4V TGCA 2 cut(s) 35, 568
HpyF3I CTNAG 4 cut(s) 474, 489, 546, 685
Hsp92II CATG 6 cut(s) 11, 152, 335, 450, 572, 775
Kzo9I GATC 3 cut(s) 515, 535, 1019
LpnPI CCDG 5 cut(s) 128, 221, 371, 592, 875
Lsp1109I GCAGC 2 cut(s) 47, 491
LweI GCATC 2 cut(s) 671, 928
MaeI CTAG 2 cut(s) 693, 830
MaeIII GTNAC 2 cut(s) 3, 966
MalI GATC 3 cut(s) 517, 537, 1021
MboI GATC 3 cut(s) 515, 535, 1019
MboII GAAGA 6 cut(s) 170, 275, 299, 352, 601, 1025
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 1 cut(s) 515
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 7 cut(s) 40, 145, 211, 233, 316, 421, 457
MunI CAATTG 1 cut(s) 30
NdeII GATC 3 cut(s) 515, 535, 1019
NlaIII CATG 6 cut(s) 11, 152, 335, 450, 572, 775
NlaIV GGNNCC 2 cut(s) 851, 860
NmuCI GTSAC 2 cut(s) 3, 966
NspI RCATGY 1 cut(s) 11
PacI TTAATTAA 1 cut(s) 69
PagI TCATGA 1 cut(s) 331
PciI ACATGT 1 cut(s) 7
PkrI GCNGC 2 cut(s) 37, 481
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PscI ACATGT 1 cut(s) 7
PshBI ATTAAT 2 cut(s) 65, 191
PsiI TTATAA 1 cut(s) 983
PspN4I GGNNCC 2 cut(s) 851, 860
PsuI RGATCY 1 cut(s) 515
RsaI GTAC 2 cut(s) 202, 788
RsaNI GTAC 2 cut(s) 201, 787
SatI GCNGC 2 cut(s) 36, 480
Sau3AI GATC 3 cut(s) 515, 535, 1019
SchI GAGTC 1 cut(s) 449
SetI ASST 8 cut(s) 40, 244, 432, 532, 552, 730, 904, 958
SfaNI GCATC 2 cut(s) 671, 928
SspI AATATT 2 cut(s) 406, 946
SspMI CTAG 2 cut(s) 693, 830
TaaI ACNGT 4 cut(s) 54, 354, 668, 839
TaqI TCGA 2 cut(s) 56, 538
TscAI CASTG 1 cut(s) 1015
TseFI GTSAC 2 cut(s) 3, 966
TseI GCWGC 2 cut(s) 35, 479
Tsp45I GTSAC 2 cut(s) 3, 966
TspDTI ATGAA 5 cut(s) 111, 116, 246, 348, 896
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 1 cut(s) 1015
VspI ATTAAT 2 cut(s) 65, 191
XapI RAATTY 2 cut(s) 602, 743
XceI RCATGY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XspI CTAG 2 cut(s) 693, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.