Rh2DG388300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000268
Physical Location & Seq
Forward (+)
56255424 .. 56255729
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG388300.1

Sequence Viewer

Length: 306 bp
ATGCAGTATCATTCTGTGAACGAGCGTCTGCGCATAGCTCTCACCTTGTTGAGGCATCCGGACAACCAAGCACGAAACAATATTGCTGAAGCTAGACAAAGGTCACTTCAAAAAGTTATATGCAAGAAACGTGGACCAAACACAATGAAGATAGATCAAGATAGCACAGCACACAGCGATACTGATGAAGGTTTGCAAAGGTCTCCAAAGAAAATGAAGGCAATCCACGAAATAGATGCAGCCAACGTGAACAAGAAAAAAGGTCCTGGTCGGCCTCATGGATCAAAGAATAAACTTAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.49

Weight (kDa)

10.41

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 32
AccIII TCCGGA 1 cut(s) 58
AclWI GGATC 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 51
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 2 cut(s) 38, 92
AluI AGCT 2 cut(s) 38, 92
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 289
Aor13HI TCCGGA 1 cut(s) 58
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 134, 263
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 2 cut(s) 134, 263
BbvI GCAGC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 296
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 2 cut(s) 134, 263
BmgT120I GGNCC 2 cut(s) 134, 263
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 64, 226
BoxI GACNNNNGTC 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 58
BseBI CCWGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 251
BshFI GGCC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 207
BsnI GGCC 1 cut(s) 274
Bso31I GGTCTC 1 cut(s) 207
Bsp13I TCCGGA 1 cut(s) 58
Bsp143I GATC 2 cut(s) 154, 281
BspANI GGCC 1 cut(s) 274
BspEI TCCGGA 1 cut(s) 58
BspPI GGATC 1 cut(s) 289
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 207
BssMI GATC 2 cut(s) 154, 281
Bst2UI CCWGG 1 cut(s) 267
BstAFI CTTAAG 1 cut(s) 296
BstENI CCTNNNNNAGG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 2 cut(s) 157, 284
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 2 cut(s) 154, 281
BstNI CCWGG 1 cut(s) 267
BstPAI GACNNNNGTC 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 55
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 134, 263
CseI GACGC 1 cut(s) 14
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 1 cut(s) 278
CviJI RGCY 4 cut(s) 38, 92, 242, 274
CviKI_1 RGCY 4 cut(s) 38, 92, 242, 274
DpnI GATC 2 cut(s) 156, 283
DpnII GATC 2 cut(s) 154, 281
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 2 cut(s) 134, 263
Eco57I CTGAAG 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 265
FaeI CATG 1 cut(s) 281
FaiI YATR 4 cut(s) 35, 119, 121, 279
FatI CATG 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 93
FspI TGCGCA 1 cut(s) 32
GlaI GCGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 33
Hin1II CATG 1 cut(s) 281
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 3 cut(s) 19, 134, 250
Hpy188III TCNNGA 2 cut(s) 59, 158
Hpy8I GTNNAC 3 cut(s) 19, 134, 250
HpyAV CCTTC 2 cut(s) 182, 211
HpyCH4IV ACGT 2 cut(s) 130, 246
HpyCH4V TGCA 4 cut(s) 4, 123, 196, 239
HpySE526I ACGT 2 cut(s) 130, 246
Hsp92II CATG 1 cut(s) 281
HspAI GCGC 1 cut(s) 31
Kpn2I TCCGGA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 154, 281
LpnPI CCDG 3 cut(s) 72, 252, 279
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 2 cut(s) 64, 226
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 130, 246
MaeIII GTNAC 1 cut(s) 102
MalI GATC 2 cut(s) 156, 283
MboI GATC 2 cut(s) 154, 281
MboII GAAGA 1 cut(s) 160
MnlI CCTC 2 cut(s) 45, 285
MroI TCCGGA 1 cut(s) 58
MseI TTAA 1 cut(s) 297
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
NdeII GATC 2 cut(s) 154, 281
NlaIII CATG 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 102
NsbI TGCGCA 1 cut(s) 32
PkrI GCNGC 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 263
PshAI GACNNNNGTC 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspPI GGNCC 2 cut(s) 134, 263
PspPPI RGGWCCY 1 cut(s) 263
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 2 cut(s) 154, 281
Sau96I GGNCC 2 cut(s) 134, 263
ScrFI CCNGG 1 cut(s) 267
SetI ASST 9 cut(s) 40, 47, 94, 104, 133, 193, 203, 249, 265
SfaNI GCATC 2 cut(s) 64, 226
SinI GGWCC 2 cut(s) 134, 263
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SspI AATATT 1 cut(s) 82
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 265
TaiI ACGT 2 cut(s) 133, 249
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 3 cut(s) 161, 201, 230
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 134, 263
XagI CCTNNNNNAGG 1 cut(s) 49
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.