Rw0G001840

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00055
OG0000268
Physical Location & Seq
Forward (+)
61714 .. 63671
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001840.1

Sequence Viewer

Length: 1221 bp
ATGCTGTTTGTAATATTGACAAACGTTGTGGGAGAGTTGAAAGGTGTTTTTGGTAGTAATACGATGACAAAGGCTTTGGGGGACCTGAAAGAGGAATTTTTCAAAGCGATAAATGAACTGAAAGAGCCATATGTCAAGGAAGATCTAGTTGCTTCTTCATGTCAGATATTAAGCGAAGATGACGTTGAGCCACCAAATATCGAGGTCAAGGCTAGGGAACCTAGCACCAAAAAAACAATTATAAAGAAGGAGGCCTCATCGAATGATATTAGTCCAAAGAATCTTCGACGCACTGTTGAAAGAAAGCCTGGCCATCAAATCTCAAGTCCATTTGTGCATTTAGGGAAGTTGGAAGTGATGGGGAATAAAATAGATCTTTTAACTACAAAACTTATGGAGGAAAAGCCAAGAAAGCTGCAAGATATTGGTCCTTTCACAGGGTGTCGTGATCTTTATGATGACGACGTATATTTGATTGCGTTTGTATTTCTGGAATCAGAAGATCTAGATTTCAGAAATTTTCAAACTGATTATGAACATCTTAACCGTTCGGCAATGAAATGCCTAGAGCCAGGGGGACTTGTTACCTCCGAGGGTAGAGCAATTACGGCAGCCAAGAAAGGAGGTAATGATTTGTTAGAATTTGTTGCCACGGCACCAAAGAGATTTGCCTCTATATTACAATATCGAAAAGGCCTTAAGAATGGAGAAAAGATATTTATCCCCATCCTGGATCCAAATACTACCCCAAACCACTGGTTCTTCATTATATGGGACACTTACCTGAACCCTGCACGCACTATGGCTCGAAATGATCTTGTTTATTATGTGCTTTTGGCATTGGACACAATATTTGACACTGAAATCCAAAGTTGTTTCAAGAAAGGATGGTCGTTATGTTCATTCACAGTTTTCAATGTAGATGACATTCACATTCAACAAAACAACTTCGATTGTGGCATTTTCATTCTCAGATACATAATAAACTATGATAATCCATTGAAAGATGAGTTAGATTCCGTAAATCGCCGTGTGCAACTTGCCCTTTGGATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGACGAAGCAACTGGAAATAGTGTTGATCAACATCATGGAAAGAGCTGTTCACAAGTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

406

Amino Acids

46.25

Weight (kDa)

5.74

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccB1I GGYRCC 2 cut(s) 655, 1124
AclI AACGTT 1 cut(s) 24
AclWI GGATC 2 cut(s) 728, 741
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 3 cut(s) 95, 517, 641
AdeI CACNNNGTG 1 cut(s) 441
AfiI CCNNNNNNNGG 4 cut(s) 91, 437, 730, 1078
AflII CTTAAG 1 cut(s) 698
AgsI TTSAA 9 cut(s) 40, 103, 299, 524, 880, 916, 938, 1003, 1057
AjnI CCWGG 3 cut(s) 307, 571, 729
AluBI AGCT 2 cut(s) 415, 1203
AluI AGCT 2 cut(s) 415, 1203
AlwI GGATC 2 cut(s) 728, 741
AoxI GGCC 3 cut(s) 252, 310, 694
ApeKI GCWGC 2 cut(s) 415, 611
ApoI RAATTY 3 cut(s) 95, 517, 641
ArsI GACNNNNNNTTYG 6 cut(s) 58, 90, 310, 342, 836, 868
AseI ATTAAT 1 cut(s) 1089
AspS9I GGNCC 2 cut(s) 82, 428
AsuHPI GGTGA 1 cut(s) 1093
AvaII GGWCC 2 cut(s) 82, 428
BalI TGGCCA 1 cut(s) 312
BamHI GGATCC 1 cut(s) 733
BanI GGYRCC 2 cut(s) 655, 1124
BbvI GCAGC 2 cut(s) 402, 623
BccI CCATC 5 cut(s) 321, 352, 734, 882, 1115
BceAI ACGGC 3 cut(s) 624, 669, 1014
BciT130I CCWGG 3 cut(s) 309, 573, 731
BclI TGATCA 1 cut(s) 1183
BfaI CTAG 5 cut(s) 146, 213, 222, 506, 566
BfrI CTTAAG 1 cut(s) 698
BglII AGATCT 3 cut(s) 142, 373, 502
BisI GCNGC 2 cut(s) 416, 612
BlsI GCNGC 2 cut(s) 417, 613
Bme1390I CCNGG 3 cut(s) 309, 573, 731
Bme18I GGWCC 2 cut(s) 82, 428
BmgT120I GGNCC 2 cut(s) 82, 428
BmiI GGNNCC 5 cut(s) 83, 219, 657, 735, 1126
BmrFI CCNGG 3 cut(s) 309, 573, 731
BpuEI CTTGAG 1 cut(s) 307
BsaBI GATNNNNATC 2 cut(s) 719, 1188
BsaJI CCNNGG 3 cut(s) 572, 591, 651
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 437, 730, 1078
Bse1I ACTGG 2 cut(s) 761, 1174
Bse3DI GCAATG 1 cut(s) 561
Bse8I GATNNNNATC 2 cut(s) 719, 1188
BseBI CCWGG 3 cut(s) 309, 573, 731
BseDI CCNNGG 3 cut(s) 572, 591, 651
BseGI GGATG 3 cut(s) 726, 893, 1056
BseJI GATNNNNATC 2 cut(s) 719, 1188
BseLI CCNNNNNNNGG 4 cut(s) 91, 437, 730, 1078
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 1 cut(s) 985
BseNI ACTGG 2 cut(s) 761, 1174
BseXI GCAGC 2 cut(s) 402, 623
BsgI GTGCAG 1 cut(s) 777
BshFI GGCC 3 cut(s) 254, 312, 696
BshNI GGYRCC 2 cut(s) 655, 1124
BslFI GGGAC 3 cut(s) 95, 591, 788
BslI CCNNNNNNNGG 4 cut(s) 91, 437, 730, 1078
BsmFI GGGAC 3 cut(s) 95, 591, 788
BsnI GGCC 3 cut(s) 254, 312, 696
Bsp143I GATC 8 cut(s) 142, 373, 448, 502, 733, 814, 1137, 1183
BspANI GGCC 3 cut(s) 254, 312, 696
BspCNI CTCAG 1 cut(s) 984
BspLI GGNNCC 5 cut(s) 83, 219, 657, 735, 1126
BspPI GGATC 2 cut(s) 728, 741
BspT107I GGYRCC 2 cut(s) 655, 1124
BspTI CTTAAG 1 cut(s) 698
BsrDI GCAATG 1 cut(s) 561
BsrI ACTGG 2 cut(s) 761, 1174
BssECI CCNNGG 3 cut(s) 572, 591, 651
BssMI GATC 8 cut(s) 142, 373, 448, 502, 733, 814, 1137, 1183
Bst2UI CCWGG 3 cut(s) 309, 573, 731
Bst4CI ACNGT 3 cut(s) 295, 548, 910
BstAFI CTTAAG 1 cut(s) 698
BstC8I GCNNGC 1 cut(s) 796
BstDEI CTNAG 1 cut(s) 971
BstDSI CCRYGG 1 cut(s) 651
BstENI CCTNNNNNAGG 2 cut(s) 89, 435
BstF5I GGATG 3 cut(s) 726, 893, 1056
BstKTI GATC 8 cut(s) 145, 376, 451, 505, 736, 817, 1140, 1186
BstMBI GATC 8 cut(s) 142, 373, 448, 502, 733, 814, 1137, 1183
BstMWI GCNNNNNNNGC 2 cut(s) 412, 608
BstNI CCWGG 3 cut(s) 309, 573, 731
BstSCI CCNGG 3 cut(s) 307, 571, 729
BstV1I GCAGC 2 cut(s) 402, 623
BstX2I RGATCY 4 cut(s) 142, 373, 502, 733
BstXI CCANNNNNNTGG 1 cut(s) 756
BstYI RGATCY 4 cut(s) 142, 373, 502, 733
BsuRI GGCC 3 cut(s) 254, 312, 696
BtgI CCRYGG 1 cut(s) 651
BtsCI GGATG 3 cut(s) 726, 893, 1056
BtsIMutI CAGTG 3 cut(s) 291, 754, 858
Cac8I GCNNGC 1 cut(s) 796
Cfr13I GGNCC 2 cut(s) 82, 428
CseI GACGC 1 cut(s) 297
CspCI CAANNNNNGTGG 2 cut(s) 9, 44
CviAII CATG 3 cut(s) 159, 1077, 1193
DdeI CTNAG 1 cut(s) 971
DpnI GATC 8 cut(s) 144, 375, 450, 504, 735, 816, 1139, 1185
DpnII GATC 8 cut(s) 142, 373, 448, 502, 733, 814, 1137, 1183
DraIII CACNNNGTG 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 310
Eco147I AGGCCT 2 cut(s) 254, 696
Eco47I GGWCC 2 cut(s) 82, 428
EcoNI CCTNNNNNAGG 2 cut(s) 89, 435
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 3 cut(s) 307, 571, 729
FaeI CATG 3 cut(s) 162, 1080, 1196
FaqI GGGAC 3 cut(s) 95, 591, 788
FatI CATG 3 cut(s) 158, 1076, 1192
FauNDI CATATG 1 cut(s) 130
FbaI TGATCA 1 cut(s) 1183
Fnu4HI GCNGC 2 cut(s) 416, 612
FokI GGATG 3 cut(s) 713, 900, 1063
Fsp4HI GCNGC 2 cut(s) 416, 612
FspBI CTAG 5 cut(s) 146, 213, 222, 506, 566
GluI GCNGC 2 cut(s) 416, 612
HaeIII GGCC 3 cut(s) 254, 312, 696
HgaI GACGC 1 cut(s) 297
Hin1II CATG 3 cut(s) 162, 1080, 1196
HinfI GANTC 3 cut(s) 280, 494, 1016
HphI GGTGA 1 cut(s) 1093
Hpy166II GTNNAC 1 cut(s) 1208
Hpy188I TCNGA 5 cut(s) 165, 499, 515, 592, 974
Hpy188III TCNNGA 5 cut(s) 446, 491, 506, 880, 1141
Hpy8I GTNNAC 1 cut(s) 1208
Hpy99I CGWCG 2 cut(s) 291, 467
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 3 cut(s) 295, 548, 910
HpyCH4IV ACGT 3 cut(s) 24, 183, 465
HpyCH4V TGCA 4 cut(s) 337, 418, 794, 1036
HpyF10VI GCNNNNNNNGC 2 cut(s) 412, 608
HpyF3I CTNAG 1 cut(s) 971
HpySE526I ACGT 3 cut(s) 24, 183, 465
Hsp92II CATG 3 cut(s) 162, 1080, 1196
Ksp22I TGATCA 1 cut(s) 1183
Kzo9I GATC 8 cut(s) 142, 373, 448, 502, 733, 814, 1137, 1183
Lsp1109I GCAGC 2 cut(s) 402, 623
MaeI CTAG 5 cut(s) 146, 213, 222, 506, 566
MaeII ACGT 3 cut(s) 24, 183, 465
MaeIII GTNAC 1 cut(s) 583
MalI GATC 8 cut(s) 144, 375, 450, 504, 735, 816, 1139, 1185
MboI GATC 8 cut(s) 142, 373, 448, 502, 733, 814, 1137, 1183
MboII GAAGA 7 cut(s) 147, 152, 188, 275, 512, 754, 1163
MflI RGATCY 4 cut(s) 142, 373, 502, 733
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 7 cut(s) 95, 237, 517, 603, 641, 1086, 1155
MluNI TGGCCA 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 330
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 5 cut(s) 170, 380, 543, 699, 1089
Msp20I TGGCCA 1 cut(s) 312
MspCI CTTAAG 1 cut(s) 698
MspR9I CCNGG 3 cut(s) 309, 573, 731
MvaI CCWGG 3 cut(s) 309, 573, 731
MwoI GCNNNNNNNGC 2 cut(s) 412, 608
NdeI CATATG 1 cut(s) 130
NdeII GATC 8 cut(s) 142, 373, 448, 502, 733, 814, 1137, 1183
NlaIII CATG 3 cut(s) 162, 1080, 1196
NlaIV GGNNCC 5 cut(s) 83, 219, 657, 735, 1126
PceI AGGCCT 2 cut(s) 254, 696
PfeI GAWTC 3 cut(s) 280, 494, 1016
PfoI TCCNGGA 1 cut(s) 729
PkrI GCNGC 2 cut(s) 417, 613
PpuMI RGGWCCY 1 cut(s) 82
PshBI ATTAAT 1 cut(s) 1089
PsiI TTATAA 1 cut(s) 242
Psp1406I AACGTT 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 82
Psp6I CCWGG 3 cut(s) 307, 571, 729
PspGI CCWGG 3 cut(s) 307, 571, 729
PspN4I GGNNCC 5 cut(s) 83, 219, 657, 735, 1126
PspPI GGNCC 2 cut(s) 82, 428
PspPPI RGGWCCY 1 cut(s) 82
PsuI RGATCY 4 cut(s) 142, 373, 502, 733
SaqAI TTAA 5 cut(s) 170, 380, 543, 699, 1089
SatI GCNGC 2 cut(s) 416, 612
Sau3AI GATC 8 cut(s) 142, 373, 448, 502, 733, 814, 1137, 1183
Sau96I GGNCC 2 cut(s) 82, 428
ScrFI CCNGG 3 cut(s) 309, 573, 731
SinI GGWCC 2 cut(s) 82, 428
SmlI CTYRAG 2 cut(s) 322, 698
SmoI CTYRAG 2 cut(s) 322, 698
Sse9I AATT 7 cut(s) 95, 237, 517, 603, 641, 1086, 1155
SseBI AGGCCT 2 cut(s) 254, 696
SspI AATATT 2 cut(s) 15, 852
SspMI CTAG 5 cut(s) 146, 213, 222, 506, 566
StuI AGGCCT 2 cut(s) 254, 696
StyD4I CCNGG 3 cut(s) 307, 571, 729
TaaI ACNGT 3 cut(s) 295, 548, 910
TaiI ACGT 3 cut(s) 27, 186, 468
TaqI TCGA 6 cut(s) 201, 260, 286, 688, 808, 951
TasI AATT 7 cut(s) 95, 237, 517, 603, 641, 1086, 1155
TfiI GAWTC 3 cut(s) 280, 494, 1016
Tru1I TTAA 5 cut(s) 170, 380, 543, 699, 1089
Tru9I TTAA 5 cut(s) 170, 380, 543, 699, 1089
TscAI CASTG 3 cut(s) 298, 761, 865
TseI GCWGC 2 cut(s) 415, 611
TspDTI ATGAA 8 cut(s) 129, 147, 549, 572, 754, 891, 955, 1122
TspGWI ACGGA 1 cut(s) 1009
TspRI CASTG 3 cut(s) 298, 761, 865
Vha464I CTTAAG 1 cut(s) 698
VpaK11BI GGWCC 2 cut(s) 82, 428
VspI ATTAAT 1 cut(s) 1089
XagI CCTNNNNNAGG 2 cut(s) 89, 435
XapI RAATTY 3 cut(s) 95, 517, 641
XbaI TCTAGA 1 cut(s) 505
XspI CTAG 5 cut(s) 146, 213, 222, 506, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.