Rmu_sc0004888.1_g000042

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004888.1
OG0000268
Physical Location & Seq
Forward (+)
220424 .. 221638
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004888.1_g000042.1.cds

Sequence Viewer

Length: 1128 bp
atgcaaatatgtggttccaatctattacagtttaagaaatttgtggcttctaagtggcatacactcacgcctactgaaaaagccaagtacagtattccaggccctgatgtttcatctggaattacgaagaaaattaggaatacatccaaatcctcagctaacatatccactcgatgtagtccacaccagtttcaacaagttgtttctaaattttctggggaacaaattgcagcaataactgaattgggcttcgatacattagtgcaattgtcatgcacacgagtacaccgagatttatgtcaatttttgattgataagtttgtcactgaggagtgtttgattgagctgcatggtaagagtatgaaaatgagtttttcagattttaaacagattatgagtgtgcctgaaggaggaatagatgtagactttagcggctcaattgaagaccctgacatgaaaccatggcttgattattatgtcagaaattctgggtatatagaaatttcagacataattgcaaagttagatggagtaaatgtagtagatgatcactttggagtcagcttcattctgtttgcattgggaaccttgctttgcccaaatacatcaacacatctcaatccaaagtatcttcttgcattgaagaatctgaagaatataagaagtatgaactgggcaagtttttcatttgaatttctattggaaagtgtgcgggcacttgttgattgtgagaagccttcaattgcagcttggggagaagagcaatcagaaaaattaattaaatggatattgcataaagcgggtcatgaaagtccaaacattctggtttccaaagtttataattcaagtgaacagaaacatgaggcagaaaatgttgttgcccttcgagctgatgttgaatccgtgaagagtaccattatacgtgtggaggaaaagattgatgaattgggaggtcttcttagagggatacaagaaggattgttcaaagtagtgagacaagatggtgatcaggatgtcaatataaaaaggaacgaggctaatcatcaaagaaagactgtggatctgtcagcaaatgacactattaggcaaaaccatcaagaaagtgatgatttcaaaactcaaagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

375

Amino Acids

42.2

Weight (kDa)

6.03

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 840
AccI GTMKAC 1 cut(s) 423
AciI CCGC 3 cut(s) 432, 712, 800
AclWI GGATC 1 cut(s) 1068
AcsI RAATTY 5 cut(s) 38, 209, 484, 501, 692
AcuI CTGAAG 2 cut(s) 426, 671
AfaI GTAC 3 cut(s) 89, 285, 913
AfiI CCNNNNNNNGG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 922
AgsI TTSAA 9 cut(s) 194, 443, 643, 692, 741, 846, 899, 985, 1114
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 5 cut(s) 158, 346, 564, 749, 890
AluI AGCT 5 cut(s) 158, 346, 564, 749, 890
Alw26I GTCTC 1 cut(s) 988
AlwI GGATC 1 cut(s) 1068
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 3 cut(s) 230, 346, 746
ApoI RAATTY 5 cut(s) 38, 209, 484, 501, 692
AseI ATTAAT 1 cut(s) 776
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 1016
BaeGI GKGCMC 1 cut(s) 718
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BauI CACGAG 1 cut(s) 279
BbsI GAAGAC 2 cut(s) 450, 947
BbvCI CCTCAGC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 242, 333, 758
BccI CCATC 3 cut(s) 521, 995, 1101
BciT130I CCWGG 1 cut(s) 99
BciVI GTATCC 1 cut(s) 960
BclI TGATCA 2 cut(s) 547, 1006
BcoDI GTCTC 1 cut(s) 988
BfuI GTATCC 1 cut(s) 960
BisI GCNGC 4 cut(s) 231, 347, 433, 747
BlsI GCNGC 4 cut(s) 232, 348, 434, 748
Bme1390I CCNGG 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 16, 586
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 682
BmuI ACTGGG 1 cut(s) 682
BpiI GAAGAC 2 cut(s) 450, 947
Bpu10I CCTNAGC 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 923
BsaBI GATNNNNATC 1 cut(s) 1005
BsaJI CCNNGG 1 cut(s) 461
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 187, 677
Bse8I GATNNNNATC 1 cut(s) 1005
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 2 cut(s) 143, 1018
BseJI GATNNNNATC 1 cut(s) 1005
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 2 cut(s) 168, 318
BseNI ACTGG 2 cut(s) 187, 677
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 718
BseXI GCAGC 3 cut(s) 242, 333, 758
BshFI GGCC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 988
BsnI GGCC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 718
Bsp143I GATC 3 cut(s) 547, 1006, 1060
Bsp19I CCATGG 1 cut(s) 461
BspACI CCGC 3 cut(s) 432, 712, 800
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 167, 319
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 2 cut(s) 16, 586
BspPI GGATC 1 cut(s) 1068
BspQI GCTCTTC 1 cut(s) 753
BsrI ACTGG 2 cut(s) 187, 677
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 3 cut(s) 547, 1006, 1060
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 461
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 3 cut(s) 30, 92, 1057
Bst6I CTCTTC 2 cut(s) 753, 902
BstBAI YACGTR 1 cut(s) 923
BstC8I GCNNGC 1 cut(s) 714
BstDEI CTNAG 4 cut(s) 51, 154, 327, 959
BstDSI CCRYGG 1 cut(s) 461
BstENI CCTNNNNNAGG 1 cut(s) 408
BstF5I GGATG 2 cut(s) 143, 1018
BstKTI GATC 3 cut(s) 550, 1009, 1063
BstMAI GTCTC 1 cut(s) 988
BstMBI GATC 3 cut(s) 547, 1006, 1060
BstMWI GCNNNNNNNGC 1 cut(s) 887
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 718
BstV1I GCAGC 3 cut(s) 242, 333, 758
BstV2I GAAGAC 2 cut(s) 450, 947
BstX2I RGATCY 1 cut(s) 1060
BstYI RGATCY 1 cut(s) 1060
BsuI GTATCC 1 cut(s) 960
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 461
BtsCI GGATG 2 cut(s) 143, 1018
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 714
CaiI CAGNNNCTG 1 cut(s) 104
CciI TCATGA 1 cut(s) 805
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 3 cut(s) 88, 284, 912
CviAII CATG 6 cut(s) 273, 350, 454, 462, 806, 860
CviQI GTAC 3 cut(s) 88, 284, 912
DdeI CTNAG 4 cut(s) 51, 154, 327, 959
DpnI GATC 3 cut(s) 549, 1008, 1062
DpnII GATC 3 cut(s) 547, 1006, 1060
DraI TTTAAA 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 753, 902
EarI CTCTTC 2 cut(s) 753, 902
Eco130I CCWWGG 1 cut(s) 461
Eco57I CTGAAG 2 cut(s) 426, 671
EcoNI CCTNNNNNAGG 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 461
FaeI CATG 6 cut(s) 276, 353, 457, 465, 809, 863
FatI CATG 6 cut(s) 272, 349, 453, 461, 805, 859
FauI CCCGC 2 cut(s) 705, 793
FbaI TGATCA 2 cut(s) 547, 1006
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 4 cut(s) 231, 347, 433, 747
FokI GGATG 2 cut(s) 130, 1025
Fsp4HI GCNGC 4 cut(s) 231, 347, 433, 747
GluI GCNGC 4 cut(s) 231, 347, 433, 747
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 6 cut(s) 276, 353, 457, 465, 809, 863
HinfI GANTC 3 cut(s) 558, 646, 899
HphI GGTGA 1 cut(s) 1016
Hpy166II GTNNAC 4 cut(s) 182, 286, 424, 851
Hpy188I TCNGA 5 cut(s) 379, 482, 508, 651, 769
Hpy188III TCNNGA 4 cut(s) 117, 806, 1010, 1097
Hpy8I GTNNAC 4 cut(s) 182, 286, 424, 851
HpyAV CCTTC 4 cut(s) 401, 747, 893, 968
HpyCH4III ACNGT 3 cut(s) 30, 92, 1057
HpyCH4IV ACGT 1 cut(s) 922
HpyF10VI GCNNNNNNNGC 1 cut(s) 887
HpyF3I CTNAG 4 cut(s) 51, 154, 327, 959
HpySE526I ACGT 1 cut(s) 922
Hsp92II CATG 6 cut(s) 276, 353, 457, 465, 809, 863
Ksp22I TGATCA 2 cut(s) 547, 1006
Kzo9I GATC 3 cut(s) 547, 1006, 1060
LguI GCTCTTC 1 cut(s) 753
Lsp1109I GCAGC 3 cut(s) 242, 333, 758
MaeII ACGT 1 cut(s) 922
MaeIII GTNAC 1 cut(s) 322
MalI GATC 3 cut(s) 549, 1008, 1062
MboI GATC 3 cut(s) 547, 1006, 1060
MboII GAAGA 8 cut(s) 139, 455, 623, 655, 664, 770, 919, 947
MfeI CAATTG 3 cut(s) 266, 438, 741
MflI RGATCY 1 cut(s) 1060
MhlI GDGCHC 1 cut(s) 718
MlyI GAGTC 1 cut(s) 567
MnlI CCTC 8 cut(s) 163, 322, 404, 856, 922, 944, 956, 1027
MseI TTAA 4 cut(s) 33, 384, 776, 780
MspR9I CCNGG 1 cut(s) 99
MunI CAATTG 3 cut(s) 266, 438, 741
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 887
NcoI CCATGG 1 cut(s) 461
NdeII GATC 3 cut(s) 547, 1006, 1060
NlaIII CATG 6 cut(s) 276, 353, 457, 465, 809, 863
NlaIV GGNNCC 2 cut(s) 16, 586
NmuCI GTSAC 1 cut(s) 322
PacI TTAATTAA 1 cut(s) 780
PagI TCATGA 1 cut(s) 805
PciSI GCTCTTC 1 cut(s) 753
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PfeI GAWTC 2 cut(s) 646, 899
PkrI GCNGC 4 cut(s) 232, 348, 434, 748
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
Ppu21I YACGTR 1 cut(s) 923
PshBI ATTAAT 1 cut(s) 776
PsiI TTATAA 1 cut(s) 840
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 16, 586
PspPI GGNCC 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 1060
RsaI GTAC 3 cut(s) 89, 285, 913
RsaNI GTAC 3 cut(s) 88, 284, 912
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 4 cut(s) 33, 384, 776, 780
SatI GCNGC 4 cut(s) 231, 347, 433, 747
Sau3AI GATC 3 cut(s) 547, 1006, 1060
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 567
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 718
SetI ASST 8 cut(s) 160, 348, 566, 590, 751, 892, 925, 955
SsiI CCGC 3 cut(s) 432, 712, 800
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 3 cut(s) 30, 92, 1057
TaiI ACGT 1 cut(s) 925
TaqI TCGA 3 cut(s) 172, 252, 886
TatI WGTACW 2 cut(s) 87, 283
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 2 cut(s) 646, 899
Tru1I TTAA 4 cut(s) 33, 384, 776, 780
Tru9I TTAA 4 cut(s) 33, 384, 776, 780
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 3 cut(s) 230, 346, 746
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 8 cut(s) 102, 377, 470, 556, 675, 683, 822, 957
TspGWI ACGGA 1 cut(s) 892
TspRI CASTG 1 cut(s) 331
VspI ATTAAT 1 cut(s) 776
XagI CCTNNNNNAGG 1 cut(s) 408
XapI RAATTY 5 cut(s) 38, 209, 484, 501, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.