Rw0G018170

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00806
OG0000268
Physical Location & Seq
Forward (+)
7671 .. 9565
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018170.1

Sequence Viewer

Length: 1158 bp
ATGACAAAGGCTTTGGGGGACCTGAAAGAGGAATTTTTCAAAGCGATAAATGAACTGAAAGAGCCATATGTCAAGGAAGATCTAGTTGCTTCTTCATGTCAGATATTAAGCGAAGATGACGTTGAGCCACCAAATATCGAGGTCAAGGCTAGGGAACCTAGCACCAAAAAAACAATTATAAAGAAGGAGGCCTCATCGAATGATATTAGTCCAAAGAATCTTCGACGCACTGTTGAAAGAAAGCCTGGCCATCAAATCTCAAGTCCATTTGTGCATTTAGGGAAGTTGGAAGTGATGGGGAATAAAATAGATCTTTTAACTACAAAACTTATGGAGGAAAAGCCAAGAAAGCTGCAAGATATTGGTCCTTTCACAGGGTGTCGTGATCTTTATGATGACGACGTATATTTGATTGCGTTTGTATTTCTGGAATCAGAAGATCTAGATTTCAGAAATTTTCAAACTGATTATGAACATCTTAACCGTTCGGCAATGAAATGCCTAGAGCCAGGGGGACTTGTTACCTCCGAGGGTAGAGCAATTACGGCAGCCAAGAAAGGAGGTAATGATTTGTTAGAATTTGTTGCCACGGCACCAAAGAGATTTGCCTCTATATTACAATATCGAAAAGGCCTTAAGAATGGAGAAAAGATATTTATCCCCATCCTGGATCCAAATACTACCCCAAACCACTGGTTCTTCATTATATGGGACACTTACCTGAACCCTGCACGCACTATGGCTCGAAATGATCTTGTTTATTATGTGCTTTTGGCATTGGACACAATATTTGACACTGAAATCCAAAGTTGTTTCAAGAAAGGATGGTCGTTATGTTCATTCACAGTTTTCAATGTAGATGACATTCACATTCAACAAAACAACTTCGATTGTGGCATTTTCATTCTCAGATACATAATAAACTATGATAATCCATTGAAAGATGAGTTAGATTCCGTAAATCGCCGTGTGCAACTTGCCCTTTGGATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGACGAAGCAACTGGAAATAGTGTTGATCAACATCATGGAAAGAGCTGTTCACAAGTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

385

Amino Acids

44.02

Weight (kDa)

5.74

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AccB1I GGYRCC 2 cut(s) 592, 1061
AclWI GGATC 2 cut(s) 665, 678
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 3 cut(s) 32, 454, 578
AdeI CACNNNGTG 1 cut(s) 378
AfiI CCNNNNNNNGG 4 cut(s) 28, 374, 667, 1015
AflII CTTAAG 1 cut(s) 635
AgsI TTSAA 8 cut(s) 40, 236, 461, 817, 853, 875, 940, 994
AjnI CCWGG 3 cut(s) 244, 508, 666
AluBI AGCT 2 cut(s) 352, 1140
AluI AGCT 2 cut(s) 352, 1140
AlwI GGATC 2 cut(s) 665, 678
AoxI GGCC 3 cut(s) 189, 247, 631
ApeKI GCWGC 2 cut(s) 352, 548
ApoI RAATTY 3 cut(s) 32, 454, 578
ArsI GACNNNNNNTTYG 5 cut(s) 27, 247, 279, 773, 805
AseI ATTAAT 1 cut(s) 1026
AspS9I GGNCC 2 cut(s) 19, 365
AsuHPI GGTGA 1 cut(s) 1030
AvaII GGWCC 2 cut(s) 19, 365
BalI TGGCCA 1 cut(s) 249
BamHI GGATCC 1 cut(s) 670
BanI GGYRCC 2 cut(s) 592, 1061
BbvI GCAGC 2 cut(s) 339, 560
BccI CCATC 5 cut(s) 258, 289, 671, 819, 1052
BceAI ACGGC 3 cut(s) 561, 606, 951
BciT130I CCWGG 3 cut(s) 246, 510, 668
BclI TGATCA 1 cut(s) 1120
BfaI CTAG 5 cut(s) 83, 150, 159, 443, 503
BfrI CTTAAG 1 cut(s) 635
BglII AGATCT 3 cut(s) 79, 310, 439
BisI GCNGC 2 cut(s) 353, 549
BlsI GCNGC 2 cut(s) 354, 550
Bme1390I CCNGG 3 cut(s) 246, 510, 668
Bme18I GGWCC 2 cut(s) 19, 365
BmgT120I GGNCC 2 cut(s) 19, 365
BmiI GGNNCC 5 cut(s) 20, 156, 594, 672, 1063
BmrFI CCNGG 3 cut(s) 246, 510, 668
BpuEI CTTGAG 1 cut(s) 244
BsaBI GATNNNNATC 2 cut(s) 656, 1125
BsaJI CCNNGG 3 cut(s) 509, 528, 588
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 374, 667, 1015
Bse1I ACTGG 2 cut(s) 698, 1111
Bse3DI GCAATG 1 cut(s) 498
Bse8I GATNNNNATC 2 cut(s) 656, 1125
BseBI CCWGG 3 cut(s) 246, 510, 668
BseDI CCNNGG 3 cut(s) 509, 528, 588
BseGI GGATG 3 cut(s) 663, 830, 993
BseJI GATNNNNATC 2 cut(s) 656, 1125
BseLI CCNNNNNNNGG 4 cut(s) 28, 374, 667, 1015
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 922
BseNI ACTGG 2 cut(s) 698, 1111
BseXI GCAGC 2 cut(s) 339, 560
BsgI GTGCAG 1 cut(s) 714
BshFI GGCC 3 cut(s) 191, 249, 633
BshNI GGYRCC 2 cut(s) 592, 1061
BslFI GGGAC 3 cut(s) 32, 528, 725
BslI CCNNNNNNNGG 4 cut(s) 28, 374, 667, 1015
BsmFI GGGAC 3 cut(s) 32, 528, 725
BsnI GGCC 3 cut(s) 191, 249, 633
Bsp143I GATC 8 cut(s) 79, 310, 385, 439, 670, 751, 1074, 1120
BspANI GGCC 3 cut(s) 191, 249, 633
BspCNI CTCAG 1 cut(s) 921
BspLI GGNNCC 5 cut(s) 20, 156, 594, 672, 1063
BspPI GGATC 2 cut(s) 665, 678
BspT107I GGYRCC 2 cut(s) 592, 1061
BspTI CTTAAG 1 cut(s) 635
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 2 cut(s) 698, 1111
BssECI CCNNGG 3 cut(s) 509, 528, 588
BssMI GATC 8 cut(s) 79, 310, 385, 439, 670, 751, 1074, 1120
Bst2UI CCWGG 3 cut(s) 246, 510, 668
Bst4CI ACNGT 3 cut(s) 232, 485, 847
BstAFI CTTAAG 1 cut(s) 635
BstC8I GCNNGC 1 cut(s) 733
BstDEI CTNAG 1 cut(s) 908
BstDSI CCRYGG 1 cut(s) 588
BstENI CCTNNNNNAGG 2 cut(s) 26, 372
BstF5I GGATG 3 cut(s) 663, 830, 993
BstKTI GATC 8 cut(s) 82, 313, 388, 442, 673, 754, 1077, 1123
BstMBI GATC 8 cut(s) 79, 310, 385, 439, 670, 751, 1074, 1120
BstMWI GCNNNNNNNGC 2 cut(s) 349, 545
BstNI CCWGG 3 cut(s) 246, 510, 668
BstSCI CCNGG 3 cut(s) 244, 508, 666
BstV1I GCAGC 2 cut(s) 339, 560
BstX2I RGATCY 4 cut(s) 79, 310, 439, 670
BstXI CCANNNNNNTGG 1 cut(s) 693
BstYI RGATCY 4 cut(s) 79, 310, 439, 670
BsuRI GGCC 3 cut(s) 191, 249, 633
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 3 cut(s) 663, 830, 993
BtsIMutI CAGTG 3 cut(s) 228, 691, 795
Cac8I GCNNGC 1 cut(s) 733
Cfr13I GGNCC 2 cut(s) 19, 365
CseI GACGC 1 cut(s) 234
CviAII CATG 3 cut(s) 96, 1014, 1130
DdeI CTNAG 1 cut(s) 908
DpnI GATC 8 cut(s) 81, 312, 387, 441, 672, 753, 1076, 1122
DpnII GATC 8 cut(s) 79, 310, 385, 439, 670, 751, 1074, 1120
DraIII CACNNNGTG 1 cut(s) 378
EaeI YGGCCR 1 cut(s) 247
Eco147I AGGCCT 2 cut(s) 191, 633
Eco47I GGWCC 2 cut(s) 19, 365
EcoNI CCTNNNNNAGG 2 cut(s) 26, 372
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 3 cut(s) 244, 508, 666
FaeI CATG 3 cut(s) 99, 1017, 1133
FaqI GGGAC 3 cut(s) 32, 528, 725
FatI CATG 3 cut(s) 95, 1013, 1129
FauNDI CATATG 1 cut(s) 67
FbaI TGATCA 1 cut(s) 1120
Fnu4HI GCNGC 2 cut(s) 353, 549
FokI GGATG 3 cut(s) 650, 837, 1000
Fsp4HI GCNGC 2 cut(s) 353, 549
FspBI CTAG 5 cut(s) 83, 150, 159, 443, 503
GluI GCNGC 2 cut(s) 353, 549
HaeIII GGCC 3 cut(s) 191, 249, 633
HgaI GACGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 99, 1017, 1133
HinfI GANTC 3 cut(s) 217, 431, 953
HphI GGTGA 1 cut(s) 1030
Hpy166II GTNNAC 1 cut(s) 1145
Hpy188I TCNGA 5 cut(s) 102, 436, 452, 529, 911
Hpy188III TCNNGA 5 cut(s) 383, 428, 443, 817, 1078
Hpy8I GTNNAC 1 cut(s) 1145
Hpy99I CGWCG 2 cut(s) 228, 404
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 3 cut(s) 232, 485, 847
HpyCH4IV ACGT 2 cut(s) 120, 402
HpyCH4V TGCA 4 cut(s) 274, 355, 731, 973
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 545
HpyF3I CTNAG 1 cut(s) 908
HpySE526I ACGT 2 cut(s) 120, 402
Hsp92II CATG 3 cut(s) 99, 1017, 1133
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 8 cut(s) 79, 310, 385, 439, 670, 751, 1074, 1120
Lsp1109I GCAGC 2 cut(s) 339, 560
MaeI CTAG 5 cut(s) 83, 150, 159, 443, 503
MaeII ACGT 2 cut(s) 120, 402
MaeIII GTNAC 1 cut(s) 520
MalI GATC 8 cut(s) 81, 312, 387, 441, 672, 753, 1076, 1122
MboI GATC 8 cut(s) 79, 310, 385, 439, 670, 751, 1074, 1120
MboII GAAGA 7 cut(s) 84, 89, 125, 212, 449, 691, 1100
MflI RGATCY 4 cut(s) 79, 310, 439, 670
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 7 cut(s) 32, 174, 454, 540, 578, 1023, 1092
MluNI TGGCCA 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 267
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MseI TTAA 5 cut(s) 107, 317, 480, 636, 1026
Msp20I TGGCCA 1 cut(s) 249
MspCI CTTAAG 1 cut(s) 635
MspR9I CCNGG 3 cut(s) 246, 510, 668
MvaI CCWGG 3 cut(s) 246, 510, 668
MwoI GCNNNNNNNGC 2 cut(s) 349, 545
NdeI CATATG 1 cut(s) 67
NdeII GATC 8 cut(s) 79, 310, 385, 439, 670, 751, 1074, 1120
NlaIII CATG 3 cut(s) 99, 1017, 1133
NlaIV GGNNCC 5 cut(s) 20, 156, 594, 672, 1063
PceI AGGCCT 2 cut(s) 191, 633
PfeI GAWTC 3 cut(s) 217, 431, 953
PfoI TCCNGGA 1 cut(s) 666
PkrI GCNGC 2 cut(s) 354, 550
PpuMI RGGWCCY 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 1026
PsiI TTATAA 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 3 cut(s) 244, 508, 666
PspGI CCWGG 3 cut(s) 244, 508, 666
PspN4I GGNNCC 5 cut(s) 20, 156, 594, 672, 1063
PspPI GGNCC 2 cut(s) 19, 365
PspPPI RGGWCCY 1 cut(s) 19
PsuI RGATCY 4 cut(s) 79, 310, 439, 670
SaqAI TTAA 5 cut(s) 107, 317, 480, 636, 1026
SatI GCNGC 2 cut(s) 353, 549
Sau3AI GATC 8 cut(s) 79, 310, 385, 439, 670, 751, 1074, 1120
Sau96I GGNCC 2 cut(s) 19, 365
ScrFI CCNGG 3 cut(s) 246, 510, 668
SinI GGWCC 2 cut(s) 19, 365
SmlI CTYRAG 2 cut(s) 259, 635
SmoI CTYRAG 2 cut(s) 259, 635
Sse9I AATT 7 cut(s) 32, 174, 454, 540, 578, 1023, 1092
SseBI AGGCCT 2 cut(s) 191, 633
SspI AATATT 1 cut(s) 789
SspMI CTAG 5 cut(s) 83, 150, 159, 443, 503
StuI AGGCCT 2 cut(s) 191, 633
StyD4I CCNGG 3 cut(s) 244, 508, 666
TaaI ACNGT 3 cut(s) 232, 485, 847
TaiI ACGT 2 cut(s) 123, 405
TaqI TCGA 6 cut(s) 138, 197, 223, 625, 745, 888
TasI AATT 7 cut(s) 32, 174, 454, 540, 578, 1023, 1092
TfiI GAWTC 3 cut(s) 217, 431, 953
Tru1I TTAA 5 cut(s) 107, 317, 480, 636, 1026
Tru9I TTAA 5 cut(s) 107, 317, 480, 636, 1026
TscAI CASTG 3 cut(s) 235, 698, 802
TseI GCWGC 2 cut(s) 352, 548
TspDTI ATGAA 8 cut(s) 66, 84, 486, 509, 691, 828, 892, 1059
TspGWI ACGGA 1 cut(s) 946
TspRI CASTG 3 cut(s) 235, 698, 802
Vha464I CTTAAG 1 cut(s) 635
VpaK11BI GGWCC 2 cut(s) 19, 365
VspI ATTAAT 1 cut(s) 1026
XagI CCTNNNNNAGG 2 cut(s) 26, 372
XapI RAATTY 3 cut(s) 32, 454, 578
XbaI TCTAGA 1 cut(s) 442
XspI CTAG 5 cut(s) 83, 150, 159, 443, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.