Rroxscaffold_7G00207070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000268
Physical Location & Seq
Reverse (-)
56963905 .. 56964794
890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207070.1

Sequence Viewer

Length: 309 bp
ATGCGAAAAGTATCATTCGTGAACGAGCGTCTGCGCATAGCTCTCACCTTGTTGAGGCATCCGGACAACCAAGCACGCAACAATATTGCTGAAGCTAGACAAAAGTCACTTCAAAAAGTTATATGCAAGAAACGTGGACCAAACACAATGAAGATAGATCAAGACATCACAGCACGCAGCGATACTGATGAAGGTTTGCAAAGGTCTCCAAAGAAAATGAAGGCAATCCACGAAATAGATGCAGCCAACGTGAACAAGAAAAAAGGTCCTGGTCGGCCTCGTGGATCAAAGAATAAACCTAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.61

Weight (kDa)

10.9

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 35
AccIII TCCGGA 1 cut(s) 61
AclWI GGATC 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 2 cut(s) 41, 95
AluI AGCT 2 cut(s) 41, 95
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 292
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 1 cut(s) 275
ApeKI GCWGC 2 cut(s) 177, 242
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 137, 266
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 2 cut(s) 137, 266
BauI CACGAG 1 cut(s) 279
BbvI GCAGC 2 cut(s) 189, 254
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 96
BisI GCNGC 2 cut(s) 178, 243
BlsI GCNGC 2 cut(s) 179, 244
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 2 cut(s) 137, 266
BmgT120I GGNCC 2 cut(s) 137, 266
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 67, 229
BoxI GACNNNNGTC 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 54
BseAI TCCGGA 1 cut(s) 61
BseBI CCWGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 189, 254
BshFI GGCC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 210
BsnI GGCC 1 cut(s) 277
Bso31I GGTCTC 1 cut(s) 210
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 2 cut(s) 157, 284
BspANI GGCC 1 cut(s) 277
BspEI TCCGGA 1 cut(s) 61
BspPI GGATC 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 210
BssMI GATC 2 cut(s) 157, 284
BssSI CACGAG 1 cut(s) 279
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 76, 175
BstDEI CTNAG 1 cut(s) 300
BstENI CCTNNNNNAGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 2 cut(s) 160, 287
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 157, 284
BstNI CCWGG 1 cut(s) 270
BstPAI GACNNNNGTC 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 189, 254
BsuRI GGCC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 76, 175
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 137, 266
CseI GACGC 1 cut(s) 17
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviJI RGCY 4 cut(s) 41, 95, 245, 277
CviKI_1 RGCY 4 cut(s) 41, 95, 245, 277
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 159, 286
DpnII GATC 2 cut(s) 157, 284
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 137, 266
Eco57I CTGAAG 1 cut(s) 111
EcoNI CCTNNNNNAGG 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 268
FaiI YATR 3 cut(s) 38, 122, 124
Fnu4HI GCNGC 2 cut(s) 178, 243
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 178, 243
FspBI CTAG 1 cut(s) 96
FspI TGCGCA 1 cut(s) 35
GlaI GCGC 1 cut(s) 35
GluI GCNGC 2 cut(s) 178, 243
HaeIII GGCC 1 cut(s) 277
HapII CCGG 1 cut(s) 62
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 36
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 22, 137, 253
Hpy188III TCNNGA 3 cut(s) 19, 62, 161
Hpy8I GTNNAC 3 cut(s) 22, 137, 253
HpyAV CCTTC 2 cut(s) 185, 214
HpyCH4IV ACGT 2 cut(s) 133, 249
HpyCH4V TGCA 3 cut(s) 126, 199, 242
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 2 cut(s) 133, 249
HspAI GCGC 1 cut(s) 34
Kpn2I TCCGGA 1 cut(s) 61
Kzo9I GATC 2 cut(s) 157, 284
LpnPI CCDG 3 cut(s) 75, 255, 282
Lsp1109I GCAGC 2 cut(s) 189, 254
LweI GCATC 2 cut(s) 67, 229
MaeI CTAG 1 cut(s) 96
MaeII ACGT 2 cut(s) 133, 249
MaeIII GTNAC 1 cut(s) 105
MalI GATC 2 cut(s) 159, 286
MboI GATC 2 cut(s) 157, 284
MboII GAAGA 1 cut(s) 163
MnlI CCTC 2 cut(s) 48, 288
MroI TCCGGA 1 cut(s) 61
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
NdeII GATC 2 cut(s) 157, 284
NmuCI GTSAC 1 cut(s) 105
NsbI TGCGCA 1 cut(s) 35
PkrI GCNGC 2 cut(s) 179, 244
PpuMI RGGWCCY 1 cut(s) 266
PshAI GACNNNNGTC 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspPI GGNCC 2 cut(s) 137, 266
PspPPI RGGWCCY 1 cut(s) 266
SatI GCNGC 2 cut(s) 178, 243
Sau3AI GATC 2 cut(s) 157, 284
Sau96I GGNCC 2 cut(s) 137, 266
ScrFI CCNGG 1 cut(s) 270
SetI ASST 9 cut(s) 43, 50, 97, 136, 196, 206, 252, 268, 301
SfaNI GCATC 2 cut(s) 67, 229
SinI GGWCC 2 cut(s) 137, 266
SspI AATATT 1 cut(s) 85
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 268
TaiI ACGT 2 cut(s) 136, 252
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 2 cut(s) 177, 242
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 3 cut(s) 164, 204, 233
VpaK11BI GGWCC 2 cut(s) 137, 266
XagI CCTNNNNNAGG 1 cut(s) 52
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.