Rroxscaffold_2G00140550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000268
Physical Location & Seq
Reverse (-)
78775156 .. 78776907
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140550.1

Sequence Viewer

Length: 510 bp
ATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAAGAACAAGATCAAGACAATAGAAGAAATTGATGAAGCTACTGGAAATAGTGTTGATCAACTTCATGGCAAGAGCTGTTCAAAAGTCGTGCAGAGAAAAACCTCAACACTACAAGCAAGGGGTCGTGAGTGGCTGAATACCGATCCTCCAAAGCCTCTCTCCTCCTTTTCTTACAATATACGGAGAAGTAACCTTCTCAATCTTCCACCACCTCTCTCTGCACGCCGCAGTAGACGGCGTCCCCGGAGCAGCCCCAAATCTTGTCGATACAATCAGAATGCAAAGCTTCAATTCGCCGGCCGCTTCTTCTTCAATTGCGTCACCGGAGATGACGATCCGGGAACAGCACCAGATAGCGTGCTCAGAGACTTGGGAATCCAGAGCCGGAGGGGCAACAACCCAAATCAGAACCCGAAAGAAGCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.08

Weight (kDa)

10.15

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 313
AciI CCGC 2 cut(s) 307, 382
AclWI GGATC 2 cut(s) 218, 410
AcoI YGGCCR 1 cut(s) 379
AcyI GRCGYC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 4 cut(s) 7, 162, 371, 394
AluBI AGCT 3 cut(s) 119, 156, 367
AluI AGCT 3 cut(s) 119, 156, 367
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 2 cut(s) 218, 410
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 330
AseI ATTAAT 1 cut(s) 39
AsuC2I CCSGG 2 cut(s) 325, 420
AsuHPI GGTGA 2 cut(s) 43, 394
BanI GGYRCC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 332
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 2 cut(s) 325, 420
BcoDI GTCTC 1 cut(s) 441
BglI GCCNNNNNGGC 1 cut(s) 471
BisI GCNGC 3 cut(s) 307, 331, 382
BlsI GCNGC 3 cut(s) 308, 332, 383
Bme1390I CCNGG 2 cut(s) 325, 420
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 325, 420
BpuMI CCSGG 2 cut(s) 325, 420
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 323
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 127
Bse8I GATNNNNATC 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 323
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 457
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 232
BseX3I CGGCCG 1 cut(s) 379
BseXI GCAGC 1 cut(s) 342
BsgI GTGCAG 2 cut(s) 191, 285
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 1 cut(s) 381
BshNI GGYRCC 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 444
BsiSI CCGG 5 cut(s) 325, 378, 405, 419, 466
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 4 cut(s) 90, 136, 223, 415
BspACI CCGC 2 cut(s) 307, 382
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 2 cut(s) 218, 410
BspT107I GGYRCC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 4 cut(s) 90, 136, 223, 415
BssNI GRCGYC 1 cut(s) 319
BstACI GRCGYC 1 cut(s) 319
BstC8I GCNNGC 3 cut(s) 304, 379, 440
BstDEI CTNAG 1 cut(s) 443
BstKTI GATC 4 cut(s) 93, 139, 226, 418
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 4 cut(s) 90, 136, 223, 415
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstSCI CCNGG 2 cut(s) 323, 418
BstV1I GCAGC 1 cut(s) 342
BstZI CGGCCG 1 cut(s) 379
BsuRI GGCC 1 cut(s) 381
Cac8I GCNNGC 3 cut(s) 304, 379, 440
Cfr10I RCCGGY 1 cut(s) 377
CseI GACGC 2 cut(s) 308, 388
CviAII CATG 2 cut(s) 27, 146
CviJI RGCY 9 cut(s) 47, 119, 156, 214, 235, 333, 367, 381, 465
CviKI_1 RGCY 9 cut(s) 47, 119, 156, 214, 235, 333, 367, 381, 465
DdeI CTNAG 1 cut(s) 443
DpnI GATC 4 cut(s) 92, 138, 225, 417
DpnII GATC 4 cut(s) 90, 136, 223, 415
EaeI YGGCCR 1 cut(s) 379
EagI CGGCCG 1 cut(s) 379
EclXI CGGCCG 1 cut(s) 379
Eco52I CGGCCG 1 cut(s) 379
FaeI CATG 2 cut(s) 30, 149
FaiI YATR 3 cut(s) 28, 147, 260
FaqI GGGAC 1 cut(s) 306
FatI CATG 2 cut(s) 26, 145
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 3 cut(s) 307, 331, 382
Fsp4HI GCNGC 3 cut(s) 307, 331, 382
GluI GCNGC 3 cut(s) 307, 331, 382
HaeIII GGCC 1 cut(s) 381
HapII CCGG 5 cut(s) 325, 378, 405, 419, 466
HgaI GACGC 2 cut(s) 308, 388
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 2 cut(s) 30, 149
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 1 cut(s) 456
HpaII CCGG 5 cut(s) 325, 378, 405, 419, 466
HphI GGTGA 2 cut(s) 43, 394
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 3 cut(s) 357, 446, 489
Hpy188III TCNNGA 3 cut(s) 94, 206, 460
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 284
HpyCH4V TGCA 3 cut(s) 172, 302, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpyF3I CTNAG 1 cut(s) 443
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 2 cut(s) 30, 149
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 4 cut(s) 90, 136, 223, 415
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 8 cut(s) 108, 338, 391, 418, 432, 444, 473, 479
Lsp1109I GCAGC 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 269, 400
MalI GATC 4 cut(s) 92, 138, 225, 417
MboI GATC 4 cut(s) 90, 136, 223, 415
MboII GAAGA 5 cut(s) 94, 116, 275, 379, 382
MfeI CAATTG 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 5 cut(s) 36, 108, 371, 394, 505
MnlI CCTC 7 cut(s) 37, 193, 237, 246, 253, 303, 462
MroNI GCCGGC 1 cut(s) 377
MseI TTAA 1 cut(s) 39
MspI CCGG 5 cut(s) 325, 378, 405, 419, 466
MspR9I CCNGG 2 cut(s) 325, 420
MunI CAATTG 1 cut(s) 394
Mva1269I GAATGC 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 471
NaeI GCCGGC 1 cut(s) 379
NciI CCSGG 2 cut(s) 325, 420
NdeII GATC 4 cut(s) 90, 136, 223, 415
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 2 cut(s) 30, 149
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 400
PctI GAATGC 1 cut(s) 364
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 456
PflFI GACNNNGTC 1 cut(s) 318
PfoI TCCNGGA 1 cut(s) 418
PkrI GCNGC 3 cut(s) 308, 332, 383
PshBI ATTAAT 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 76
PsyI GACNNNGTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 3 cut(s) 307, 331, 382
Sau3AI GATC 4 cut(s) 90, 136, 223, 415
ScrFI CCNGG 2 cut(s) 325, 420
SduI GDGCHC 1 cut(s) 444
SetI ASST 6 cut(s) 121, 158, 185, 276, 295, 369
Sse9I AATT 5 cut(s) 36, 108, 371, 394, 505
SsiI CCGC 2 cut(s) 307, 382
StyD4I CCNGG 2 cut(s) 323, 418
TaqI TCGA 1 cut(s) 346
TasI AATT 5 cut(s) 36, 108, 371, 394, 505
TauI GCSGC 2 cut(s) 309, 384
TfiI GAWTC 1 cut(s) 456
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 3 cut(s) 72, 129, 134
TspGWI ACGGA 1 cut(s) 277
Tth111I GACNNNGTC 1 cut(s) 318
VspI ATTAAT 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.