Rh6DG167100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000268
Physical Location & Seq
Forward (+)
25812197 .. 25813400
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG167100.1

Sequence Viewer

Length: 1035 bp
ATGATAGCAGAATCGAAAGTAATAAAAAGCAACAGTAAATTGAAGAATAAAACAGACGACAAAAAGGAACAAAAAGTAATTGTTGGGCAATTTGCTTTCAACCAATACCTAAAAATCCAAGCGGATGAGTTGATTGCTTGCGGTAAGAATGTGAAGAAAGATAATGAGTTTAAGAAATTGGTGGCTTCTAAGTGGCATACACTCACGCCTACTGAAAAAGCCAAGTACAGTATTCCAGGCCCTGATGTTTCATCTAGAACTACGAAGAAAAGTAGGAATACATCCAAATCCTCAGCTACCATATCCACTCGATGCAGTCCACACCAGTTTCAACAAGTTGTTTCTAAATTTTCTGGGGAACAGATTGCAGCAATAACTGAATTGGGCTTTGGTACATTAGTGCAATTGTCATGCACACGAGTACGCCGAGATTTATGTCGATTTTTGATTGATAAGTTTGACACTGAGGAGTGTTTGATTGAGCTGCATGGTAAGAGTATGAAAATGAGTTCTTCAGATTTTAAACAGATTATGAGTGTACCTGAAGGAGGAACAGATGTAGACTTCAGTGGCTCAATTGAAGACCCTGACATGAAACCATTGGTTGATTATTATGTCGGAAATTCTGGGTATATAGAAATTTCAGACATAATTGCAAAGTTAGATGGAGTAAACGTAGTAGATGATCACTTTGGAGTCAGCTTCATTCTATTGGCATTGGGAACCTTGCTTTGCCCAAATACATCAACACATCTCAATCCAAAGTACCTTCTTGCATTGAAGAATATGAAGAATATAAGAAGTATGAACTGGGCAAGTTTTTCATTTGAATTTCTATTGGAAAGTGTGCGGTTGTTCAAGCAGAACAAAGCTAAGTACATATCTGGATGTGTGTTGTTCTTCCAACTATATTATTATAATGTCATCGGATATGGAAGGACACTTGTTGATTGTGAGAAGCCTTCAATTGTAGTTTGGGGAGAGGAGCAATCAGCAAAATTAATTAAATGGATATTGTGGAAAGGGGGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

344

Amino Acids

38.72

Weight (kDa)

9.05

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 918
AccI GTMKAC 1 cut(s) 561
AciI CCGC 3 cut(s) 122, 141, 850
AcsI RAATTY 4 cut(s) 347, 622, 639, 830
AcuI CTGAAG 3 cut(s) 498, 550, 564
AfaI GTAC 6 cut(s) 227, 394, 423, 540, 767, 878
AfiI CCNNNNNNNGG 1 cut(s) 548
AgsI TTSAA 8 cut(s) 43, 100, 332, 581, 781, 830, 859, 966
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 4 cut(s) 296, 484, 702, 872
AluI AGCT 4 cut(s) 296, 484, 702, 872
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 368, 484
ApoI RAATTY 4 cut(s) 347, 622, 639, 830
AseI ATTAAT 1 cut(s) 1001
AspS9I GGNCC 1 cut(s) 239
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 588
BbvCI CCTCAGC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 380, 471
BccI CCATC 1 cut(s) 659
BciT130I CCWGG 1 cut(s) 237
BclI TGATCA 1 cut(s) 685
BfaI CTAG 1 cut(s) 255
BisI GCNGC 2 cut(s) 369, 485
BlsI GCNGC 2 cut(s) 370, 486
Bme1390I CCNGG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 724
BmrFI CCNGG 1 cut(s) 237
BmrI ACTGGG 1 cut(s) 820
BmsI GCATC 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 820
BpiI GAAGAC 1 cut(s) 588
Bpu10I CCTNAGC 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse1I ACTGG 2 cut(s) 325, 815
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 3 cut(s) 130, 281, 893
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMII CTCAG 2 cut(s) 306, 456
BseNI ACTGG 2 cut(s) 325, 815
BseRI GAGGAG 2 cut(s) 482, 998
BseXI GCAGC 2 cut(s) 380, 471
BshFI GGCC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 548
BsnI GGCC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 685
BspACI CCGC 3 cut(s) 122, 141, 850
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 305, 457
BspHI TCATGA 1 cut(s) 1031
BspLI GGNNCC 1 cut(s) 724
BsrI ACTGG 2 cut(s) 325, 815
BssMI GATC 1 cut(s) 685
BssSI CACGAG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 35, 230
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 4 cut(s) 189, 292, 465, 873
BstENI CCTNNNNNAGG 1 cut(s) 546
BstF5I GGATG 3 cut(s) 130, 281, 893
BstKTI GATC 1 cut(s) 688
BstMBI GATC 1 cut(s) 685
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 380, 471
BstV2I GAAGAC 1 cut(s) 588
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 3 cut(s) 130, 281, 893
BtsIMutI CAGTG 2 cut(s) 462, 574
Cac8I GCNNGC 1 cut(s) 139
CaiI CAGNNNCTG 1 cut(s) 242
CciI TCATGA 1 cut(s) 1031
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 6 cut(s) 226, 393, 422, 539, 766, 877
CviAII CATG 4 cut(s) 411, 488, 592, 1032
CviQI GTAC 6 cut(s) 226, 393, 422, 539, 766, 877
DdeI CTNAG 4 cut(s) 189, 292, 465, 873
DpnI GATC 1 cut(s) 687
DpnII GATC 1 cut(s) 685
DraI TTTAAA 1 cut(s) 523
Eco57I CTGAAG 3 cut(s) 498, 550, 564
EcoNI CCTNNNNNAGG 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 4 cut(s) 414, 491, 595, 1035
FatI CATG 4 cut(s) 410, 487, 591, 1031
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 369, 485
FokI GGATG 3 cut(s) 137, 268, 900
Fsp4HI GCNGC 2 cut(s) 369, 485
FspBI CTAG 1 cut(s) 255
GluI GCNGC 2 cut(s) 369, 485
HaeIII GGCC 1 cut(s) 240
Hin1II CATG 4 cut(s) 414, 491, 595, 1035
HinfI GANTC 2 cut(s) 11, 696
Hpy166II GTNNAC 4 cut(s) 320, 539, 562, 673
Hpy188I TCNGA 4 cut(s) 517, 620, 646, 929
Hpy188III TCNNGA 3 cut(s) 255, 885, 1032
Hpy8I GTNNAC 4 cut(s) 320, 539, 562, 673
HpyAV CCTTC 4 cut(s) 539, 779, 930, 972
HpyCH4III ACNGT 2 cut(s) 35, 230
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 7 cut(s) 315, 368, 403, 414, 487, 656, 776
HpyF3I CTNAG 4 cut(s) 189, 292, 465, 873
HpySE526I ACGT 1 cut(s) 675
Hsp92II CATG 4 cut(s) 414, 491, 595, 1035
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 1 cut(s) 685
LmnI GCTCC 1 cut(s) 985
Lsp1109I GCAGC 2 cut(s) 380, 471
LweI GCATC 1 cut(s) 302
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 675
MalI GATC 1 cut(s) 687
MboI GATC 1 cut(s) 685
MboII GAAGA 8 cut(s) 55, 166, 277, 504, 593, 793, 802, 892
MfeI CAATTG 3 cut(s) 404, 576, 966
MlyI GAGTC 1 cut(s) 705
MmeI TCCRAC 2 cut(s) 598, 928
MnlI CCTC 4 cut(s) 301, 460, 542, 976
MseI TTAA 4 cut(s) 171, 522, 1001, 1005
MspR9I CCNGG 1 cut(s) 237
MunI CAATTG 3 cut(s) 404, 576, 966
MvaI CCWGG 1 cut(s) 237
NdeII GATC 1 cut(s) 685
NlaIII CATG 4 cut(s) 414, 491, 595, 1035
NlaIV GGNNCC 1 cut(s) 724
NmeAIII GCCGAG 1 cut(s) 452
PacI TTAATTAA 1 cut(s) 1005
PagI TCATGA 1 cut(s) 1031
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 2 cut(s) 370, 486
PleI GAGTC 1 cut(s) 704
PpsI GAGTC 1 cut(s) 704
PshBI ATTAAT 1 cut(s) 1001
PsiI TTATAA 1 cut(s) 918
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 724
PspPI GGNCC 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 242
RsaI GTAC 6 cut(s) 227, 394, 423, 540, 767, 878
RsaNI GTAC 6 cut(s) 226, 393, 422, 539, 766, 877
SaqAI TTAA 4 cut(s) 171, 522, 1001, 1005
SatI GCNGC 2 cut(s) 369, 485
Sau3AI GATC 1 cut(s) 685
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 705
ScrFI CCNGG 1 cut(s) 237
SetI ASST 9 cut(s) 111, 298, 486, 544, 678, 704, 728, 771, 874
SfaNI GCATC 1 cut(s) 302
SsiI CCGC 3 cut(s) 122, 141, 850
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 2 cut(s) 35, 230
TaiI ACGT 1 cut(s) 678
TaqI TCGA 3 cut(s) 14, 310, 439
TatI WGTACW 2 cut(s) 225, 876
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 4 cut(s) 171, 522, 1001, 1005
Tru9I TTAA 4 cut(s) 171, 522, 1001, 1005
TscAI CASTG 2 cut(s) 469, 574
TseI GCWGC 2 cut(s) 368, 484
TspDTI ATGAA 7 cut(s) 240, 515, 608, 694, 803, 813, 821
TspRI CASTG 2 cut(s) 469, 574
VspI ATTAAT 1 cut(s) 1001
XagI CCTNNNNNAGG 1 cut(s) 546
XapI RAATTY 4 cut(s) 347, 622, 639, 830
XbaI TCTAGA 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 561
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.