RLG00000027733

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
14493013 .. 14495044
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027733

Sequence Viewer

Length: 543 bp
ATGCATTGCAGGCAGGGAGATTTAAGTTATTTAAGTAGCAGGGTATCATATCTTGCATCACAGACAAAGGAGGGTACCGACATTTTGAAGAAAGAACTCAGCAGATTGGAGCCGATACTTGGAGATGTTTTGAAGCAACAAAAAGATGTAGGTGATAGTCCAGATCCATGTAATAACATTGTAAGAGATCCTATCAGGATATTTATCCACATCCTGGATCCAGATACTACCCCAAACCACTGGTTCTTCATTGTGATTAAATTAGCAAGAACGGATGTAGAGATATGGGACACTTACCCGAATCATGCACGCACTATGGCTCGAAATGATCTTGTTTATTATATGTTAGATTCTGTAAATCGTCGTGTGCAACTTGCCCTTTGGATATTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGATGAAGCTACTGAAAATAATGTTGATCAACATCATGGCAAGAGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.83

Weight (kDa)

6.16

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 74, 458
AccB7I CCANNNNNTGG 1 cut(s) 214
AclWI GGATC 4 cut(s) 158, 182, 212, 225
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 3 cut(s) 119, 214, 412
AgsI TTSAA 3 cut(s) 88, 133, 391
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 2 cut(s) 500, 537
AluI AGCT 2 cut(s) 500, 537
AlwI GGATC 4 cut(s) 158, 182, 212, 225
AseI ATTAAT 1 cut(s) 423
Asp718I GGTACC 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 164, 427
BamHI GGATCC 1 cut(s) 217
BanI GGYRCC 2 cut(s) 74, 458
BccI CCATC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 215
BclI TGATCA 1 cut(s) 517
Bme1390I CCNGG 1 cut(s) 215
BmiI GGNNCC 4 cut(s) 76, 111, 219, 460
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 65
BsaBI GATNNNNATC 2 cut(s) 203, 522
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 214, 412
Bse1I ACTGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 4
Bse8I GATNNNNATC 2 cut(s) 203, 522
BseBI CCWGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 210, 280
BseJI GATNNNNATC 2 cut(s) 203, 522
BseLI CCNNNNNNNGG 3 cut(s) 119, 214, 412
BseMI GCAATG 1 cut(s) 4
BseMII CTCAG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 245
BshNI GGYRCC 2 cut(s) 74, 458
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 119, 214, 412
BsmFI GGGAC 1 cut(s) 302
Bsp143I GATC 6 cut(s) 163, 187, 217, 328, 471, 517
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 4 cut(s) 76, 111, 219, 460
BspPI GGATC 4 cut(s) 158, 182, 212, 225
BspT107I GGYRCC 2 cut(s) 74, 458
BsrDI GCAATG 1 cut(s) 4
BsrI ACTGG 1 cut(s) 245
BssMI GATC 6 cut(s) 163, 187, 217, 328, 471, 517
Bst2UI CCWGG 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 11, 310
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 210, 280
BstKTI GATC 6 cut(s) 166, 190, 220, 331, 474, 520
BstMBI GATC 6 cut(s) 163, 187, 217, 328, 471, 517
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstX2I RGATCY 3 cut(s) 163, 187, 217
BstXI CCANNNNNNTGG 1 cut(s) 240
BstYI RGATCY 3 cut(s) 163, 187, 217
BtsCI GGATG 2 cut(s) 210, 280
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 11, 310
Csp6I GTAC 1 cut(s) 75
CviAII CATG 4 cut(s) 168, 305, 411, 527
CviJI RGCY 5 cut(s) 112, 320, 431, 500, 537
CviKI_1 RGCY 5 cut(s) 112, 320, 431, 500, 537
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 1 cut(s) 98
DpnI GATC 6 cut(s) 165, 189, 219, 330, 473, 519
DpnII GATC 6 cut(s) 163, 187, 217, 328, 471, 517
EcoRII CCWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 171, 308, 414, 530
FaiI YATR 9 cut(s) 49, 169, 286, 306, 317, 342, 344, 412, 528
FaqI GGGAC 1 cut(s) 302
FatI CATG 4 cut(s) 167, 304, 410, 526
FbaI TGATCA 1 cut(s) 517
FokI GGATG 2 cut(s) 197, 287
Hin1II CATG 4 cut(s) 171, 308, 414, 530
HinfI GANTC 2 cut(s) 301, 350
HphI GGTGA 2 cut(s) 164, 427
Hpy188III TCNNGA 4 cut(s) 161, 196, 221, 475
Hpy99I CGWCG 1 cut(s) 366
HpyCH4V TGCA 5 cut(s) 4, 9, 56, 308, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 4 cut(s) 171, 308, 414, 530
KpnI GGTACC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 6 cut(s) 163, 187, 217, 328, 471, 517
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 7 cut(s) 25, 174, 181, 200, 226, 227, 234
LweI GCATC 1 cut(s) 65
MalI GATC 6 cut(s) 165, 189, 219, 330, 473, 519
MboI GATC 6 cut(s) 163, 187, 217, 328, 471, 517
MboII GAAGA 3 cut(s) 100, 238, 497
MflI RGATCY 3 cut(s) 163, 187, 217
MluCI AATT 3 cut(s) 260, 420, 489
MnlI CCTC 2 cut(s) 64, 421
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 23, 32, 258, 423, 541
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 6 cut(s) 163, 187, 217, 328, 471, 517
NlaIII CATG 4 cut(s) 171, 308, 414, 530
NlaIV GGNNCC 4 cut(s) 76, 111, 219, 460
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 2 cut(s) 301, 350
PflMI CCANNNNNTGG 1 cut(s) 214
PfoI TCCNGGA 1 cut(s) 213
PshBI ATTAAT 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 4 cut(s) 76, 111, 219, 460
PsuI RGATCY 3 cut(s) 163, 187, 217
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SaqAI TTAA 5 cut(s) 23, 32, 258, 423, 541
Sau3AI GATC 6 cut(s) 163, 187, 217, 328, 471, 517
ScrFI CCNGG 1 cut(s) 215
SetI ASST 3 cut(s) 154, 502, 539
SfaNI GCATC 1 cut(s) 65
Sse9I AATT 3 cut(s) 260, 420, 489
StyD4I CCNGG 1 cut(s) 213
TaqI TCGA 1 cut(s) 322
TasI AATT 3 cut(s) 260, 420, 489
TfiI GAWTC 2 cut(s) 301, 350
Tru1I TTAA 5 cut(s) 23, 32, 258, 423, 541
Tru9I TTAA 5 cut(s) 23, 32, 258, 423, 541
TscAI CASTG 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 238, 456, 510
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 214
VspI ATTAAT 1 cut(s) 423
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.