Rh1AG062100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
10374227 .. 10376412
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG062100.1

Sequence Viewer

Length: 648 bp
ATGACAAACGCTTTGGGGGATATGAAAGAGGAATTTTTCAAAGTGATAAATGAACTGAAAGAGCATGAAGTGGGAGATATGTCTGCTTTGAAAAATGATATAGAATCTTTAAAGAATGCTGTTTGTAATATTGACAAATCAGTTGATGAGCTGAAAGGTGTTGTTGGTACCATTCTTCCAAATGTTGTGGGAGAGCTGAAAGGTGTTTTTGGTAGTAATACGATGACAAAAGCTTTGGGGGACCTGAAAGAGGAATTTTTCAAAGCGATAAATGAACTGAAAGAGCCATATGTCAAGGAAGATCTAGTTGCTTCTTCATGTCAGATATTAAGCGAAGATGACGTTGAGCCACCAAATATCGAGTTAGATTCCATAAATCGTCGTGTGCAACTTGCCCTTTGGATGTTGAAGCACCCAAAGAACCAAACATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGACGAAGCTACTGGAAATAGTGTTGATCAACATCATGGCAAGAGCTGTTCACAAGTCGTGCAGAGAAAAACCTCAACACTACAAGCAAGGGGTCGTGGTCGCCCTCGTGGTGCAAAGAATAAAAACTCTCGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.0

Weight (kDa)

6.15

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 167
AccB1I GGYRCC 2 cut(s) 167, 476
AcsI RAATTY 2 cut(s) 32, 254
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 2 cut(s) 250, 430
AgsI TTSAA 4 cut(s) 40, 91, 262, 409
AluBI AGCT 5 cut(s) 151, 196, 233, 518, 555
AluI AGCT 5 cut(s) 151, 196, 233, 518, 555
ApoI RAATTY 2 cut(s) 32, 254
ArsI GACNNNNNNTTYG 3 cut(s) 27, 217, 249
AseI ATTAAT 1 cut(s) 441
Asp718I GGTACC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 445
AvaII GGWCC 1 cut(s) 241
BanI GGYRCC 2 cut(s) 167, 476
BauI CACGAG 1 cut(s) 615
BccI CCATC 1 cut(s) 467
BclI TGATCA 1 cut(s) 535
BfaI CTAG 1 cut(s) 305
BglII AGATCT 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 3 cut(s) 169, 242, 478
BsaBI GATNNNNATC 1 cut(s) 540
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 430
Bse1I ACTGG 1 cut(s) 526
Bse8I GATNNNNATC 1 cut(s) 540
BseGI GGATG 1 cut(s) 408
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 250, 430
BseNI ACTGG 1 cut(s) 526
BsgI GTGCAG 1 cut(s) 590
BshNI GGYRCC 2 cut(s) 167, 476
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 250, 430
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 121
Bsp143I GATC 3 cut(s) 301, 489, 535
BspLI GGNNCC 3 cut(s) 169, 242, 478
BspT107I GGYRCC 2 cut(s) 167, 476
BsrI ACTGG 1 cut(s) 526
BssMI GATC 3 cut(s) 301, 489, 535
BssSI CACGAG 1 cut(s) 615
Bst2BI CACGAG 1 cut(s) 615
BstENI CCTNNNNNAGG 1 cut(s) 248
BstF5I GGATG 1 cut(s) 408
BstKTI GATC 3 cut(s) 304, 492, 538
BstMBI GATC 3 cut(s) 301, 489, 535
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BtsCI GGATG 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 168
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 4 cut(s) 65, 318, 429, 545
CviJI RGCY 8 cut(s) 151, 196, 233, 286, 349, 449, 518, 555
CviKI_1 RGCY 8 cut(s) 151, 196, 233, 286, 349, 449, 518, 555
CviQI GTAC 1 cut(s) 168
DpnI GATC 3 cut(s) 303, 491, 537
DpnII GATC 3 cut(s) 301, 489, 535
DraI TTTAAA 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 241
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 241
FaeI CATG 4 cut(s) 68, 321, 432, 548
FaqI GGGAC 1 cut(s) 254
FatI CATG 4 cut(s) 64, 317, 428, 544
FauNDI CATATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 535
FokI GGATG 1 cut(s) 415
FspBI CTAG 1 cut(s) 305
Hin1II CATG 4 cut(s) 68, 321, 432, 548
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 2 cut(s) 104, 368
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 560
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 2 cut(s) 493, 639
Hpy8I GTNNAC 1 cut(s) 560
Hpy99I CGWCG 1 cut(s) 384
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 388, 571, 623
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 4 cut(s) 68, 321, 432, 548
KpnI GGTACC 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 3 cut(s) 301, 489, 535
LpnPI CCDG 2 cut(s) 257, 507
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 342
MalI GATC 3 cut(s) 303, 491, 537
MboI GATC 3 cut(s) 301, 489, 535
MboII GAAGA 5 cut(s) 167, 306, 311, 347, 515
MflI RGATCY 1 cut(s) 301
MluCI AATT 4 cut(s) 32, 254, 438, 507
MnlI CCTC 5 cut(s) 22, 244, 439, 592, 624
MseI TTAA 3 cut(s) 110, 329, 441
Mva1269I GAATGC 1 cut(s) 121
NdeI CATATG 1 cut(s) 289
NdeII GATC 3 cut(s) 301, 489, 535
NlaIII CATG 4 cut(s) 68, 321, 432, 548
NlaIV GGNNCC 3 cut(s) 169, 242, 478
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 104, 368
PpuMI RGGWCCY 1 cut(s) 241
PshBI ATTAAT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 169, 242, 478
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 3 cut(s) 110, 329, 441
Sau3AI GATC 3 cut(s) 301, 489, 535
Sau96I GGNCC 1 cut(s) 241
SinI GGWCC 1 cut(s) 241
Sse9I AATT 4 cut(s) 32, 254, 438, 507
SspI AATATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 305
TaiI ACGT 1 cut(s) 345
TaqI TCGA 2 cut(s) 360, 640
TasI AATT 4 cut(s) 32, 254, 438, 507
TfiI GAWTC 2 cut(s) 104, 368
Tru1I TTAA 3 cut(s) 110, 329, 441
Tru9I TTAA 3 cut(s) 110, 329, 441
TspDTI ATGAA 6 cut(s) 38, 66, 81, 288, 306, 474
VpaK11BI GGWCC 1 cut(s) 241
VspI ATTAAT 1 cut(s) 441
XagI CCTNNNNNAGG 1 cut(s) 248
XapI RAATTY 2 cut(s) 32, 254
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.