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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 357, 504 |
| AarI | CACCTGC | 1 cut(s) | 577 |
| Acc16I | TGCGCA | 1 cut(s) | 1412 |
| Acc36I | ACCTGC | 1 cut(s) | 577 |
| AccI | GTMKAC | 2 cut(s) | 40, 63 |
| AciI | CCGC | 4 cut(s) | 72, 289, 457, 951 |
| AclWI | GGATC | 3 cut(s) | 977, 997, 1010 |
| AcsI | RAATTY | 6 cut(s) | 256, 269, 923, 1031, 1073, 1147 |
| AcuI | CTGAAG | 2 cut(s) | 52, 1488 |
| AfaI | GTAC | 3 cut(s) | 317, 577, 1307 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 50, 957, 1302 |
| AgsI | TTSAA | 9 cut(s) | 83, 269, 298, 563, 649, 778, 792, 1060, 1432 |
| AjnI | CCWGG | 1 cut(s) | 1210 |
| AluBI | AGCT | 5 cut(s) | 195, 413, 997, 1418, 1472 |
| AluI | AGCT | 5 cut(s) | 195, 413, 997, 1418, 1472 |
| Alw26I | GTCTC | 1 cut(s) | 496 |
| AlwI | GGATC | 3 cut(s) | 977, 997, 1010 |
| AoxI | GGCC | 1 cut(s) | 1293 |
| ApeKI | GCWGC | 3 cut(s) | 410, 854, 1268 |
| ApoI | RAATTY | 6 cut(s) | 256, 269, 923, 1031, 1073, 1147 |
| AspLEI | GCGC | 2 cut(s) | 948, 1413 |
| AspS9I | GGNCC | 1 cut(s) | 1082 |
| AsuHPI | GGTGA | 2 cut(s) | 680, 1082 |
| AvaII | GGWCC | 1 cut(s) | 1082 |
| BamHI | GGATCC | 1 cut(s) | 1002 |
| BbsI | GAAGAC | 3 cut(s) | 90, 611, 722 |
| BbvI | GCAGC | 3 cut(s) | 422, 866, 1255 |
| BccI | CCATC | 4 cut(s) | 152, 659, 765, 1352 |
| BciT130I | CCWGG | 1 cut(s) | 1212 |
| BclI | TGATCA | 1 cut(s) | 178 |
| BcoDI | GTCTC | 1 cut(s) | 496 |
| BfaI | CTAG | 3 cut(s) | 1181, 1349, 1473 |
| BfuAI | ACCTGC | 1 cut(s) | 577 |
| BisI | GCNGC | 5 cut(s) | 73, 290, 411, 855, 1269 |
| BlsI | GCNGC | 5 cut(s) | 74, 291, 412, 856, 1270 |
| Bme1390I | CCNGG | 1 cut(s) | 1212 |
| Bme18I | GGWCC | 1 cut(s) | 1082 |
| BmgT120I | GGNCC | 1 cut(s) | 1082 |
| BmiI | GGNNCC | 5 cut(s) | 217, 1004, 1083, 1370, 1379 |
| BmrFI | CCNGG | 1 cut(s) | 1212 |
| BmrI | ACTGGG | 1 cut(s) | 620 |
| BmsI | GCATC | 2 cut(s) | 1190, 1444 |
| BmuI | ACTGGG | 1 cut(s) | 620 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1480 |
| BpiI | GAAGAC | 3 cut(s) | 90, 611, 722 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 830, 862 |
| BsaAI | YACGTR | 1 cut(s) | 319 |
| BsaBI | GATNNNNATC | 1 cut(s) | 669 |
| BsaI | GGTCTC | 1 cut(s) | 496 |
| BsaWI | WCCGGW | 1 cut(s) | 1302 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 50, 957, 1302 |
| Bse1I | ACTGG | 2 cut(s) | 615, 1379 |
| Bse8I | GATNNNNATC | 1 cut(s) | 669 |
| BseBI | CCWGG | 1 cut(s) | 1212 |
| BseGI | GGATG | 6 cut(s) | 332, 682, 700, 859, 1344, 1435 |
| BseJI | GATNNNNATC | 1 cut(s) | 669 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 50, 957, 1302 |
| BseMII | CTCAG | 1 cut(s) | 840 |
| BseNI | ACTGG | 2 cut(s) | 615, 1379 |
| BseRI | GAGGAG | 1 cut(s) | 437 |
| BseXI | GCAGC | 3 cut(s) | 422, 866, 1255 |
| BshFI | GGCC | 1 cut(s) | 1295 |
| BsiSI | CCGG | 1 cut(s) | 1303 |
| BslFI | GGGAC | 1 cut(s) | 920 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 50, 957, 1302 |
| BsmAI | GTCTC | 1 cut(s) | 496 |
| BsmFI | GGGAC | 1 cut(s) | 920 |
| BsnI | GGCC | 1 cut(s) | 1295 |
| Bso31I | GGTCTC | 1 cut(s) | 496 |
| Bsp143I | GATC | 5 cut(s) | 178, 670, 933, 982, 1002 |
| BspACI | CCGC | 4 cut(s) | 72, 289, 457, 951 |
| BspANI | GGCC | 1 cut(s) | 1295 |
| BspCNI | CTCAG | 1 cut(s) | 841 |
| BspHI | TCATGA | 2 cut(s) | 706, 808 |
| BspLI | GGNNCC | 5 cut(s) | 217, 1004, 1083, 1370, 1379 |
| BspMI | ACCTGC | 1 cut(s) | 577 |
| BspPI | GGATC | 3 cut(s) | 977, 997, 1010 |
| BspTNI | GGTCTC | 1 cut(s) | 496 |
| BsrI | ACTGG | 2 cut(s) | 615, 1379 |
| BssMI | GATC | 5 cut(s) | 178, 670, 933, 982, 1002 |
| BssNAI | GTATAC | 1 cut(s) | 41 |
| Bst1107I | GTATAC | 1 cut(s) | 41 |
| Bst2UI | CCWGG | 1 cut(s) | 1212 |
| Bst4CI | ACNGT | 3 cut(s) | 721, 729, 1187 |
| Bst6I | CTCTTC | 2 cut(s) | 566, 1055 |
| BstBAI | YACGTR | 1 cut(s) | 319 |
| BstC8I | GCNNGC | 1 cut(s) | 1453 |
| BstDEI | CTNAG | 4 cut(s) | 623, 849, 864, 1204 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 48 |
| BstF5I | GGATG | 6 cut(s) | 332, 682, 700, 859, 1344, 1435 |
| BstHHI | GCGC | 2 cut(s) | 948, 1413 |
| BstKTI | GATC | 5 cut(s) | 181, 673, 936, 985, 1005 |
| BstMAI | GTCTC | 1 cut(s) | 496 |
| BstMBI | GATC | 5 cut(s) | 178, 670, 933, 982, 1002 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 298, 1274 |
| BstNI | CCWGG | 1 cut(s) | 1212 |
| BstNSI | RCATGY | 1 cut(s) | 1455 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1480 |
| BstSCI | CCNGG | 1 cut(s) | 1210 |
| BstSNI | TACGTA | 1 cut(s) | 319 |
| BstV1I | GCAGC | 3 cut(s) | 422, 866, 1255 |
| BstV2I | GAAGAC | 3 cut(s) | 90, 611, 722 |
| BstX2I | RGATCY | 2 cut(s) | 982, 1002 |
| BstYI | RGATCY | 2 cut(s) | 982, 1002 |
| BstZ17I | GTATAC | 1 cut(s) | 41 |
| BsuRI | GGCC | 1 cut(s) | 1295 |
| BtsCI | GGATG | 6 cut(s) | 332, 682, 700, 859, 1344, 1435 |
| BtsIMutI | CAGTG | 1 cut(s) | 1372 |
| BveI | ACCTGC | 1 cut(s) | 577 |
| Cac8I | GCNNGC | 1 cut(s) | 1453 |
| CciI | TCATGA | 2 cut(s) | 706, 808 |
| CfoI | GCGC | 2 cut(s) | 948, 1413 |
| Cfr13I | GGNCC | 1 cut(s) | 1082 |
| CseI | GACGC | 1 cut(s) | 1394 |
| Csp6I | GTAC | 3 cut(s) | 316, 576, 1306 |
| CviAII | CATG | 7 cut(s) | 94, 524, 707, 809, 822, 1040, 1452 |
| CviQI | GTAC | 3 cut(s) | 316, 576, 1306 |
| DdeI | CTNAG | 4 cut(s) | 623, 849, 864, 1204 |
| DpnI | GATC | 5 cut(s) | 180, 672, 935, 984, 1004 |
| DpnII | GATC | 5 cut(s) | 178, 670, 933, 982, 1002 |
| DraI | TTTAAA | 2 cut(s) | 25, 1237 |
| Eam1104I | CTCTTC | 2 cut(s) | 566, 1055 |
| EarI | CTCTTC | 2 cut(s) | 566, 1055 |
| Eco105I | TACGTA | 1 cut(s) | 319 |
| Eco31I | GGTCTC | 1 cut(s) | 496 |
| Eco47I | GGWCC | 1 cut(s) | 1082 |
| Eco57I | CTGAAG | 2 cut(s) | 52, 1488 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 48 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1082 |
| EcoRI | GAATTC | 1 cut(s) | 1073 |
| EcoRII | CCWGG | 1 cut(s) | 1210 |
| FaeI | CATG | 7 cut(s) | 97, 527, 710, 812, 825, 1043, 1455 |
| FaqI | GGGAC | 1 cut(s) | 920 |
| FatI | CATG | 7 cut(s) | 93, 523, 706, 808, 821, 1039, 1451 |
| FbaI | TGATCA | 1 cut(s) | 178 |
| FblI | GTMKAC | 2 cut(s) | 40, 63 |
| Fnu4HI | GCNGC | 5 cut(s) | 73, 290, 411, 855, 1269 |
| FokI | GGATG | 6 cut(s) | 339, 689, 707, 846, 1331, 1422 |
| Fsp4HI | GCNGC | 5 cut(s) | 73, 290, 411, 855, 1269 |
| FspBI | CTAG | 3 cut(s) | 1181, 1349, 1473 |
| FspI | TGCGCA | 1 cut(s) | 1412 |
| GlaI | GCGC | 2 cut(s) | 947, 1412 |
| GluI | GCNGC | 5 cut(s) | 73, 290, 411, 855, 1269 |
| HaeIII | GGCC | 1 cut(s) | 1295 |
| HapII | CCGG | 1 cut(s) | 1303 |
| HgaI | GACGC | 1 cut(s) | 1394 |
| HhaI | GCGC | 2 cut(s) | 948, 1413 |
| Hin1II | CATG | 7 cut(s) | 97, 527, 710, 812, 825, 1043, 1455 |
| Hin6I | GCGC | 2 cut(s) | 946, 1411 |
| HinP1I | GCGC | 2 cut(s) | 946, 1411 |
| HincII | GTYRAC | 1 cut(s) | 1260 |
| HindII | GTYRAC | 1 cut(s) | 1260 |
| HindIII | AAGCTT | 1 cut(s) | 995 |
| HinfI | GANTC | 3 cut(s) | 189, 563, 815 |
| HpaII | CCGG | 1 cut(s) | 1303 |
| HphI | GGTGA | 2 cut(s) | 680, 1082 |
| Hpy166II | GTNNAC | 5 cut(s) | 41, 64, 515, 1260, 1399 |
| Hpy188I | TCNGA | 9 cut(s) | 19, 122, 368, 551, 850, 933, 982, 1192, 1422 |
| Hpy188III | TCNNGA | 8 cut(s) | 324, 493, 674, 707, 761, 809, 1381, 1439 |
| Hpy8I | GTNNAC | 5 cut(s) | 41, 64, 515, 1260, 1399 |
| HpyAV | CCTTC | 1 cut(s) | 632 |
| HpyCH4III | ACNGT | 3 cut(s) | 721, 729, 1187 |
| HpyCH4IV | ACGT | 1 cut(s) | 318 |
| HpyCH4V | TGCA | 3 cut(s) | 410, 1039, 1455 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 298, 1274 |
| HpyF3I | CTNAG | 4 cut(s) | 623, 849, 864, 1204 |
| HpySE526I | ACGT | 1 cut(s) | 318 |
| Hsp92II | CATG | 7 cut(s) | 97, 527, 710, 812, 825, 1043, 1455 |
| HspAI | GCGC | 2 cut(s) | 946, 1411 |
| Ksp22I | TGATCA | 1 cut(s) | 178 |
| Kzo9I | GATC | 5 cut(s) | 178, 670, 933, 982, 1002 |
| LmnI | GCTCC | 2 cut(s) | 161, 424 |
| Lsp1109I | GCAGC | 3 cut(s) | 422, 866, 1255 |
| LweI | GCATC | 2 cut(s) | 1190, 1444 |
| MaeI | CTAG | 3 cut(s) | 1181, 1349, 1473 |
| MaeII | ACGT | 1 cut(s) | 318 |
| MaeIII | GTNAC | 1 cut(s) | 1482 |
| MalI | GATC | 5 cut(s) | 180, 672, 935, 984, 1004 |
| MboI | GATC | 5 cut(s) | 178, 670, 933, 982, 1002 |
| MfeI | CAATTG | 3 cut(s) | 78, 405, 897 |
| MflI | RGATCY | 2 cut(s) | 982, 1002 |
| MlyI | GAGTC | 2 cut(s) | 198, 824 |
| MmeI | TCCRAC | 2 cut(s) | 100, 367 |
| MseI | TTAA | 6 cut(s) | 24, 444, 509, 870, 1236, 1489 |
| MspA1I | CMGCKG | 2 cut(s) | 72, 953 |
| MspI | CCGG | 1 cut(s) | 1303 |
| MspR9I | CCNGG | 1 cut(s) | 1212 |
| MunI | CAATTG | 3 cut(s) | 78, 405, 897 |
| MvaI | CCWGG | 1 cut(s) | 1212 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 298, 1274 |
| NdeII | GATC | 5 cut(s) | 178, 670, 933, 982, 1002 |
| NlaIII | CATG | 7 cut(s) | 97, 527, 710, 812, 825, 1043, 1455 |
| NlaIV | GGNNCC | 5 cut(s) | 217, 1004, 1083, 1370, 1379 |
| NmeAIII | GCCGAG | 1 cut(s) | 1321 |
| NmuCI | GTSAC | 1 cut(s) | 1482 |
| NsbI | TGCGCA | 1 cut(s) | 1412 |
| NspI | RCATGY | 1 cut(s) | 1455 |
| PaeI | GCATGC | 1 cut(s) | 1455 |
| PagI | TCATGA | 2 cut(s) | 706, 808 |
| PaqCI | CACCTGC | 1 cut(s) | 577 |
| PfeI | GAWTC | 1 cut(s) | 563 |
| PkrI | GCNGC | 5 cut(s) | 74, 291, 412, 856, 1270 |
| PleI | GAGTC | 2 cut(s) | 197, 823 |
| PpsI | GAGTC | 2 cut(s) | 197, 823 |
| Ppu21I | YACGTR | 1 cut(s) | 319 |
| PpuMI | RGGWCCY | 1 cut(s) | 1082 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1480 |
| PsiI | TTATAA | 2 cut(s) | 357, 504 |
| Psp5II | RGGWCCY | 1 cut(s) | 1082 |
| Psp6I | CCWGG | 1 cut(s) | 1210 |
| PspGI | CCWGG | 1 cut(s) | 1210 |
| PspN4I | GGNNCC | 5 cut(s) | 217, 1004, 1083, 1370, 1379 |
| PspPI | GGNCC | 1 cut(s) | 1082 |
| PspPPI | RGGWCCY | 1 cut(s) | 1082 |
| PsuI | RGATCY | 2 cut(s) | 982, 1002 |
| RsaI | GTAC | 3 cut(s) | 317, 577, 1307 |
| RsaNI | GTAC | 3 cut(s) | 316, 576, 1306 |
| SaqAI | TTAA | 6 cut(s) | 24, 444, 509, 870, 1236, 1489 |
| SatI | GCNGC | 5 cut(s) | 73, 290, 411, 855, 1269 |
| Sau3AI | GATC | 5 cut(s) | 178, 670, 933, 982, 1002 |
| Sau96I | GGNCC | 1 cut(s) | 1082 |
| SchI | GAGTC | 2 cut(s) | 198, 824 |
| ScrFI | CCNGG | 1 cut(s) | 1212 |
| SfaNI | GCATC | 2 cut(s) | 1190, 1444 |
| SinI | GGWCC | 1 cut(s) | 1082 |
| SnaBI | TACGTA | 1 cut(s) | 319 |
| SphI | GCATGC | 1 cut(s) | 1455 |
| SsiI | CCGC | 4 cut(s) | 72, 289, 457, 951 |
| SspI | AATATT | 1 cut(s) | 1462 |
| SspMI | CTAG | 3 cut(s) | 1181, 1349, 1473 |
| StyD4I | CCNGG | 1 cut(s) | 1210 |
| TaaI | ACNGT | 3 cut(s) | 721, 729, 1187 |
| TaiI | ACGT | 1 cut(s) | 321 |
| TaqI | TCGA | 1 cut(s) | 494 |
| TauI | GCSGC | 2 cut(s) | 75, 292 |
| TfiI | GAWTC | 1 cut(s) | 563 |
| Tru1I | TTAA | 6 cut(s) | 24, 444, 509, 870, 1236, 1489 |
| Tru9I | TTAA | 6 cut(s) | 24, 444, 509, 870, 1236, 1489 |
| TscAI | CASTG | 1 cut(s) | 1379 |
| TseFI | GTSAC | 1 cut(s) | 1482 |
| TseI | GCWGC | 3 cut(s) | 410, 854, 1268 |
| Tsp45I | GTSAC | 1 cut(s) | 1482 |
| TspDTI | ATGAA | 8 cut(s) | 17, 110, 187, 252, 486, 621, 797, 1146 |
| TspGWI | ACGGA | 1 cut(s) | 183 |
| TspRI | CASTG | 1 cut(s) | 1379 |
| VpaK11BI | GGWCC | 1 cut(s) | 1082 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 48 |
| XapI | RAATTY | 6 cut(s) | 256, 269, 923, 1031, 1073, 1147 |
| XceI | RCATGY | 1 cut(s) | 1455 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 586 |
| XmiI | GTMKAC | 2 cut(s) | 40, 63 |
| XspI | CTAG | 3 cut(s) | 1181, 1349, 1473 |