Rroxscaffold_6G00390530

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000268
Physical Location & Seq
Reverse (-)
5724626 .. 5730295
5670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390530.1

Sequence Viewer

Length: 390 bp
ATGGCGGAATCAAAAGTAATAAAAAGCAACAGTAAATTAAAGAATAAAACAGAAGACAAGAAGGAAGAGAAACTAACCTTGTTTACCTTCTCATTTCGTCGAAAAATCCAAGTGGATGAGTTGATGGCTTGCGGAAAGAAGGTGAAGAAAGATAATGAGAAATCAATGTGTGAGTTGCCTTCTTTATTTCGTGTTGACAGAAATCAAGGTTTTGACACCGAGGATTGTTTGATTGAGCTGCATGGTAAGAGTATAAAAGTGAGTTCTTCAGATTTTAAACAGATTATGAGTGTGCCTGAAGGAGGAACAGATGTAGACTTCAATGGCTCAATTGATGACCTTGAGATGAAACCATTAGTTGATTATTATGTCGAAAACTCGGGTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

129

Amino Acids

14.68

Weight (kDa)

5.54

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 315
AciI CCGC 2 cut(s) 5, 132
AcuI CTGAAG 2 cut(s) 252, 318
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 1 cut(s) 322
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 225
BccI CCATC 1 cut(s) 118
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 302
BsoBI CYCGRG 1 cut(s) 379
BspACI CCGC 2 cut(s) 5, 132
BssECI CCNNGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 130
CviAII CATG 1 cut(s) 242
CviJI RGCY 3 cut(s) 128, 238, 327
CviKI_1 RGCY 3 cut(s) 128, 238, 327
DraI TTTAAA 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 252, 318
Eco88I CYCGRG 1 cut(s) 379
EcoNI CCTNNNNNAGG 1 cut(s) 300
FaeI CATG 1 cut(s) 245
FaiI YATR 5 cut(s) 243, 254, 287, 369, 388
FatI CATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 239
GluI GCNGC 1 cut(s) 239
Hin1II CATG 1 cut(s) 245
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 1 cut(s) 8
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 3 cut(s) 84, 196, 316
Hpy188I TCNGA 1 cut(s) 271
Hpy8I GTNNAC 3 cut(s) 84, 196, 316
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 5 cut(s) 55, 97, 133, 189, 293
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 241
Hsp92II CATG 1 cut(s) 245
LpnPI CCDG 1 cut(s) 309
Lsp1109I GCAGC 1 cut(s) 225
MboII GAAGA 4 cut(s) 65, 77, 157, 258
MfeI CAATTG 1 cut(s) 330
MluCI AATT 2 cut(s) 35, 330
MnlI CCTC 2 cut(s) 214, 296
MseI TTAA 2 cut(s) 38, 276
MunI CAATTG 1 cut(s) 330
NlaIII CATG 1 cut(s) 245
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 240
SaqAI TTAA 2 cut(s) 38, 276
SatI GCNGC 1 cut(s) 239
SetI ASST 6 cut(s) 80, 89, 144, 211, 240, 342
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 35, 330
SsiI CCGC 2 cut(s) 5, 132
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 100, 372
TasI AATT 2 cut(s) 35, 330
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 38, 276
Tru9I TTAA 2 cut(s) 38, 276
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 362
XagI CCTNNNNNAGG 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.