Rw5G026710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000268
Physical Location & Seq
Reverse (-)
38786831 .. 38788159
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G026710.1

Sequence Viewer

Length: 1329 bp
ATGCAAATATGTGGTTCCAATCTATTACAGTTTAAGAAATTGGTGGCTTCTAAGTGGCATACACTCACGCCTACTGAAAAAGCCAAGTACAGTATTCCAGGCCCTGATGTTTCATCTGGAATTACGAAGAAAAGTAGGAATACATCCAAATCCTCAGCTACCATATCCACTCGATGTAGTCCACGCCAGTTTCAACAAGTTGTTTCTAAATTTTCTAGGGAACAAATTGCAGCAATAACTGAATTGGGCTTCGGTACATTAGTGCAATTGTCATGCACACGAGTACGCCGAGATTTATGTCGATTTTTGATTGATAAGTTCAACACTGAGGAGTGTTTGATTGAGCTGCATGGTAAGAGTATGAAAATGAGTTCTTCAGATTTTAAACAGATTATGAGTGTGCCTGAAGGAGGAATAGATGTAGACTTCAGCGGCTCAATTGAAGACCCTGACATGAAACCATTGGTTGATTATTATGTCGGAAATTCTGGGTATATAGAAATTTCAGACATAATTGCAAAGTTAGATGGAGTAAACGTAGTAGATAATCACTTTGGAGTCAGCTTCATTCTGTTGGCATTGGGAACCTTGCTTTGCCCAAATACATCAACACATCTCAATCCAAAGTATCTTCTTGCATTGAAGAATCTGAAGAATATAAGAAGTATGAACTGGGCAAGTTTTTCATTTGAATTTCTATTGGAAAGTGTGCGGTTGTTCAAGCAAAACAAAGCAAAGTACATATCTGGATGTGTGTTGTTCTTCCAACTATATTATTATAATGTCATCGGATATGGAAGGGCACTTGTTGATTGTGAGACGCCTTCAATTGCAGCTTGGGGAGAGGAGCAATCAGCAAAATTAATTAAATGGATATTGCGTAAAGGGGGTCATGAAAGTCCAAACATTCTGGTTTCCAAAGTTTATAATTCAAGTGAACAGAAACATGAGGTAGAAAATGTTGTTGCCCTTCGAGCTGATGTTGAATCCGTGAAGAGTACCATTATGCGTGTGGAGGAAAAGATTGATGAATTGGGAGGTCTTCTTAGAGGGATACAAGAAGGATTGTTCAAAGTAGTGAGACAAGATGGTGATCAGGATGTCAATATAAAAAGGGACGAGGCTAATCATGAAAGAAAGACTGTAGATCTGTCAGCAAATGATACTATTAGGCAAAACCATCAAGAAAGTGATGATTTCAAAACTCAAAGTTCAAAAGAAGTTGAGGTTAATGATGAATCATCATGCCAAATACAAAGTGACGACAACTCTGAGGCAGCACATCCTAAGGTATGTTTTGCATCAACTTCTTATTTGAATTTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

442

Amino Acids

49.59

Weight (kDa)

6.35

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 780, 927
AccI GTMKAC 1 cut(s) 423
AciI CCGC 2 cut(s) 432, 712
AcsI RAATTY 5 cut(s) 209, 484, 501, 692, 1318
AcuI CTGAAG 4 cut(s) 360, 412, 426, 671
AcyI GRCGYC 1 cut(s) 821
AfaI GTAC 5 cut(s) 89, 256, 285, 740, 1000
AfiI CCNNNNNNNGG 1 cut(s) 410
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 5 cut(s) 158, 346, 564, 836, 977
AluI AGCT 5 cut(s) 158, 346, 564, 836, 977
Alw26I GTCTC 2 cut(s) 812, 1075
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 4 cut(s) 230, 346, 833, 1277
ApoI RAATTY 5 cut(s) 209, 484, 501, 692, 1318
AseI ATTAAT 1 cut(s) 863
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 1103
AxyI CCTNAGG 1 cut(s) 1287
BaeGI GKGCMC 1 cut(s) 805
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BauI CACGAG 1 cut(s) 279
BbsI GAAGAC 2 cut(s) 450, 1034
BbvCI CCTCAGC 1 cut(s) 154
BbvI GCAGC 4 cut(s) 242, 333, 845, 1289
BccI CCATC 3 cut(s) 521, 1082, 1188
BciT130I CCWGG 1 cut(s) 99
BciVI GTATCC 1 cut(s) 1047
BclI TGATCA 1 cut(s) 1093
BcoDI GTCTC 2 cut(s) 812, 1075
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 1143
BfuI GTATCC 1 cut(s) 1047
BglII AGATCT 1 cut(s) 1147
BisI GCNGC 5 cut(s) 231, 347, 433, 834, 1278
BlsI GCNGC 5 cut(s) 232, 348, 434, 835, 1279
Bme1390I CCNGG 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 16, 586
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 682
BmsI GCATC 1 cut(s) 1310
BmuI ACTGGG 1 cut(s) 682
BpiI GAAGAC 2 cut(s) 450, 1034
Bpu10I CCTNAGC 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 1092
BsaHI GRCGYC 1 cut(s) 821
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 187, 677
Bse21I CCTNAGG 1 cut(s) 1287
Bse8I GATNNNNATC 1 cut(s) 1092
BseBI CCWGG 1 cut(s) 99
BseGI GGATG 4 cut(s) 143, 755, 1105, 1282
BseJI GATNNNNATC 1 cut(s) 1092
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 3 cut(s) 168, 318, 1263
BseNI ACTGG 2 cut(s) 187, 677
BseRI GAGGAG 2 cut(s) 344, 860
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 4 cut(s) 242, 333, 845, 1289
BshFI GGCC 1 cut(s) 102
BslFI GGGAC 1 cut(s) 1130
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 2 cut(s) 812, 1075
BsmBI CGTCTC 1 cut(s) 812
BsmFI GGGAC 1 cut(s) 1130
BsnI GGCC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 2 cut(s) 1093, 1147
BspACI CCGC 2 cut(s) 432, 712
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 3 cut(s) 167, 319, 1264
BspHI TCATGA 2 cut(s) 892, 1129
BspLI GGNNCC 2 cut(s) 16, 586
BsrI ACTGG 2 cut(s) 187, 677
BssMI GATC 2 cut(s) 1093, 1147
BssNI GRCGYC 1 cut(s) 821
BssSI CACGAG 1 cut(s) 279
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 3 cut(s) 30, 92, 1144
Bst6I CTCTTC 1 cut(s) 989
BstACI GRCGYC 1 cut(s) 821
BstDEI CTNAG 6 cut(s) 51, 154, 327, 1046, 1272, 1287
BstENI CCTNNNNNAGG 1 cut(s) 408
BstF5I GGATG 4 cut(s) 143, 755, 1105, 1282
BstKTI GATC 2 cut(s) 1096, 1150
BstMAI GTCTC 2 cut(s) 812, 1075
BstMBI GATC 2 cut(s) 1093, 1147
BstMWI GCNNNNNNNGC 1 cut(s) 974
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 1143
BstSLI GKGCMC 1 cut(s) 805
BstV1I GCAGC 4 cut(s) 242, 333, 845, 1289
BstV2I GAAGAC 2 cut(s) 450, 1034
BstX2I RGATCY 1 cut(s) 1147
BstYI RGATCY 1 cut(s) 1147
Bsu36I CCTNAGG 1 cut(s) 1287
BsuI GTATCC 1 cut(s) 1047
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 4 cut(s) 143, 755, 1105, 1282
BtsIMutI CAGTG 1 cut(s) 324
CaiI CAGNNNCTG 1 cut(s) 104
CciI TCATGA 2 cut(s) 892, 1129
Cfr13I GGNCC 1 cut(s) 101
CseI GACGC 1 cut(s) 829
Csp6I GTAC 5 cut(s) 88, 255, 284, 739, 999
CviAII CATG 7 cut(s) 273, 350, 454, 893, 947, 1130, 1245
CviQI GTAC 5 cut(s) 88, 255, 284, 739, 999
DdeI CTNAG 6 cut(s) 51, 154, 327, 1046, 1272, 1287
DpnI GATC 2 cut(s) 1095, 1149
DpnII GATC 2 cut(s) 1093, 1147
DraI TTTAAA 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 989
EarI CTCTTC 1 cut(s) 989
Eco57I CTGAAG 4 cut(s) 360, 412, 426, 671
Eco81I CCTNAGG 1 cut(s) 1287
EcoNI CCTNNNNNAGG 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 812
FaeI CATG 7 cut(s) 276, 353, 457, 896, 950, 1133, 1248
FaqI GGGAC 1 cut(s) 1130
FatI CATG 7 cut(s) 272, 349, 453, 892, 946, 1129, 1244
FbaI TGATCA 1 cut(s) 1093
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 5 cut(s) 231, 347, 433, 834, 1278
FokI GGATG 4 cut(s) 130, 762, 1112, 1269
Fsp4HI GCNGC 5 cut(s) 231, 347, 433, 834, 1278
FspBI CTAG 1 cut(s) 216
GluI GCNGC 5 cut(s) 231, 347, 433, 834, 1278
HaeIII GGCC 1 cut(s) 102
HgaI GACGC 1 cut(s) 829
Hin1I GRCGYC 1 cut(s) 821
Hin1II CATG 7 cut(s) 276, 353, 457, 896, 950, 1133, 1248
HinfI GANTC 4 cut(s) 558, 646, 986, 1238
HphI GGTGA 1 cut(s) 1103
Hpy166II GTNNAC 4 cut(s) 182, 424, 535, 938
Hpy188I TCNGA 6 cut(s) 379, 482, 508, 651, 791, 1273
Hpy188III TCNNGA 6 cut(s) 117, 747, 893, 1097, 1130, 1184
Hpy8I GTNNAC 4 cut(s) 182, 424, 535, 938
HpyAV CCTTC 5 cut(s) 401, 792, 834, 980, 1055
HpyCH4III ACNGT 3 cut(s) 30, 92, 1144
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 9 cut(s) 4, 230, 265, 276, 349, 518, 638, 833, 1301
HpyF10VI GCNNNNNNNGC 1 cut(s) 974
HpyF3I CTNAG 6 cut(s) 51, 154, 327, 1046, 1272, 1287
HpySE526I ACGT 1 cut(s) 537
Hsp92I GRCGYC 1 cut(s) 821
Hsp92II CATG 7 cut(s) 276, 353, 457, 896, 950, 1133, 1248
Ksp22I TGATCA 1 cut(s) 1093
Kzo9I GATC 2 cut(s) 1093, 1147
LmnI GCTCC 1 cut(s) 847
Lsp1109I GCAGC 4 cut(s) 242, 333, 845, 1289
LweI GCATC 1 cut(s) 1310
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 1 cut(s) 1259
MalI GATC 2 cut(s) 1095, 1149
MboI GATC 2 cut(s) 1093, 1147
MboII GAAGA 9 cut(s) 139, 366, 455, 623, 655, 664, 754, 1006, 1034
MfeI CAATTG 3 cut(s) 266, 438, 828
MflI RGATCY 1 cut(s) 1147
MhlI GDGCHC 1 cut(s) 805
MlyI GAGTC 1 cut(s) 567
MmeI TCCRAC 2 cut(s) 460, 790
MseI TTAA 5 cut(s) 33, 384, 863, 867, 1230
MspA1I CMGCKG 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 99
MunI CAATTG 3 cut(s) 266, 438, 828
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 974
NdeII GATC 2 cut(s) 1093, 1147
NlaIII CATG 7 cut(s) 276, 353, 457, 896, 950, 1133, 1248
NlaIV GGNNCC 2 cut(s) 16, 586
NmeAIII GCCGAG 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 1259
PacI TTAATTAA 1 cut(s) 867
PagI TCATGA 2 cut(s) 892, 1129
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PfeI GAWTC 3 cut(s) 646, 986, 1238
PkrI GCNGC 5 cut(s) 232, 348, 434, 835, 1279
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
PshBI ATTAAT 1 cut(s) 863
PsiI TTATAA 2 cut(s) 780, 927
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 16, 586
PspPI GGNCC 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 1147
RsaI GTAC 5 cut(s) 89, 256, 285, 740, 1000
RsaNI GTAC 5 cut(s) 88, 255, 284, 739, 999
SaqAI TTAA 5 cut(s) 33, 384, 863, 867, 1230
SatI GCNGC 5 cut(s) 231, 347, 433, 834, 1278
Sau3AI GATC 2 cut(s) 1093, 1147
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 567
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 805
SfaNI GCATC 1 cut(s) 1310
SfcI CTRYAG 1 cut(s) 1143
SsiI CCGC 2 cut(s) 432, 712
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 3 cut(s) 30, 92, 1144
TaiI ACGT 1 cut(s) 540
TaqI TCGA 3 cut(s) 172, 301, 973
TatI WGTACW 2 cut(s) 87, 738
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 3 cut(s) 646, 986, 1238
Tru1I TTAA 5 cut(s) 33, 384, 863, 867, 1230
Tru9I TTAA 5 cut(s) 33, 384, 863, 867, 1230
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 1259
TseI GCWGC 4 cut(s) 230, 346, 833, 1277
Tsp45I GTSAC 1 cut(s) 1259
TspGWI ACGGA 1 cut(s) 979
TspRI CASTG 1 cut(s) 331
VspI ATTAAT 1 cut(s) 863
XagI CCTNNNNNAGG 1 cut(s) 408
XapI RAATTY 5 cut(s) 209, 484, 501, 692, 1318
XcmI CCANNNNNNNNNTGG 1 cut(s) 1009
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.