FvH4_2g09911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000268
Physical Location & Seq
Forward (+)
8788947 .. 8792670
3724 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09911.t3

Sequence Viewer

Length: 1176 bp
ATGGTGAAACCCAACAAGAAGACAAACTATGTTGTTCCAAATCCATCTGTAGTTAGAGTTGGTAAGCACAATGTAGAATATAAGTTTGGTGTGGTTAAACCCAAAATGTTGCGATGTCGTCCAAAGCTGTTTAAAGATGTCGTTTCAAAATTTTCTGTTGAAAAAAAAGTTGCAGTAGAAGAAATGGGTTTTGGGCTGTTGTTGAAGCTCCAGTGTGAGCAACTGCAGCTTGGTTTGTGTGGTTGGTTGATTGATAGGTTTGATCCCAGCAAGTCTTCCATTGAGGTACACGGTAAGAGATTCAATCTTGGTCCGACCGACTTTGAGAACATAATGGGGGTCAAAGATGGGGGACATGATGTTGAAATTCGTGGCTCAAAGGCTGAAATACAAGAATTAAAGAACATCCACTTTGGGAGAAGCAGACATCGAATCTCTGGTATGAGTAAAATGGCTGAGAAGTTGAAAGAGAAGAAGAATGTAGATGACACCTTTAGAGTCAGGTTTGTTCTATTTGCATTGGCTACCTTGCTTTGTCCAAGTATTTCAGGTGATTTGACTGAAAAGTATCTACATCCACTAAGGGACATCGATGGTATAAAATTAAAAAATTGGGCAACTTTTTCATTCAATTATCTAGTTGAAGGTCTTGGTACATTCAAGAAGAAAAACACATCTTGTATCAGCGGGTGTGTACTATTCTTGAAGCTGTTTTATTTTGATCTTGTTGTTCATGGAAGAACGTTTGTAAATAGATCATTGACACCTATTGTCGCATGGGGGGAAAAGGAGGAAGTTAAGTTAGTGGAGTGGATTGAAGAAAATGGGGGGTTTAATGGTTTGGACATTGCTGTTGCTTATGACCGTATATCCTCAATCCCAATCAGTGTTGATGAAGATGAGGTGGTGGCTGTGAGCAATGATCACACAGAGCTTGCAACAGTTGAACCACAGTCGCAACAAAAGACGATTGATGATAAGGCAGCAGCTGAACTGGAAGCTAAACTTGGCAGTGAGATGAGCAAGATTGAAGGCCTTACTTATTGGCAGGTCTTTCAAGCCACTAACATTTTAACCACCAATTATGATCTGCTAAAATTATTTCTTCTCATGTCTGAGCAAAGCAAAAAGACATTTGTTCTAAATTTGTTAGAGCATGGCACCCATGGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

392

Amino Acids

44.19

Weight (kDa)

8.53

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1039
AccB1I GGYRCC 1 cut(s) 1160
AciI CCGC 1 cut(s) 687
AclI AACGTT 1 cut(s) 743
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 3 cut(s) 149, 366, 1144
AfaI GTAC 3 cut(s) 288, 655, 696
AjuI GAANNNNNNNTTGG 6 cut(s) 69, 101, 174, 206, 990, 1022
AluBI AGCT 7 cut(s) 127, 208, 229, 709, 934, 989, 1001
AluI AGCT 7 cut(s) 127, 208, 229, 709, 934, 989, 1001
AlwI GGATC 1 cut(s) 257
AlwNI CAGNNNCTG 1 cut(s) 989
AoxI GGCC 1 cut(s) 1033
ApeKI GCWGC 3 cut(s) 226, 983, 986
ApoI RAATTY 3 cut(s) 149, 366, 1144
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 16, 563
AvaII GGWCC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 1160
BbsI GAAGAC 2 cut(s) 26, 267
BbvI GCAGC 3 cut(s) 238, 995, 998
BccI CCATC 3 cut(s) 52, 341, 587
BclI TGATCA 1 cut(s) 922
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 2 cut(s) 48, 224
BfuAI ACCTGC 1 cut(s) 1039
BisI GCNGC 3 cut(s) 227, 984, 987
BlsI GCNGC 3 cut(s) 228, 985, 988
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 1162
BpiI GAAGAC 2 cut(s) 26, 267
BpmI CTGGAG 1 cut(s) 194
Bsa29I ATCGAT 1 cut(s) 591
BsaJI CCNNGG 1 cut(s) 1165
Bse1I ACTGG 2 cut(s) 211, 999
Bse3DI GCAATG 2 cut(s) 846, 925
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 1 cut(s) 1165
BseGI GGATG 2 cut(s) 405, 574
BseMI GCAATG 2 cut(s) 846, 925
BseMII CTCAG 2 cut(s) 447, 1107
BseNI ACTGG 2 cut(s) 211, 999
BseXI GCAGC 3 cut(s) 238, 995, 998
BseYI CCCAGC 1 cut(s) 266
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 1035
BshNI GGYRCC 1 cut(s) 1160
BshVI ATCGAT 1 cut(s) 591
BsiEI CGRYCG 1 cut(s) 318
BslFI GGGAC 2 cut(s) 366, 599
BsmFI GGGAC 2 cut(s) 366, 599
BsnI GGCC 1 cut(s) 1035
Bsp143I GATC 5 cut(s) 262, 721, 755, 922, 1087
Bsp19I CCATGG 1 cut(s) 1165
BspACI CCGC 1 cut(s) 687
BspANI GGCC 1 cut(s) 1035
BspCNI CTCAG 2 cut(s) 448, 1108
BspDI ATCGAT 1 cut(s) 591
BspLI GGNNCC 1 cut(s) 1162
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 1039
BspPI GGATC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 1160
BsrDI GCAATG 2 cut(s) 846, 925
BsrI ACTGG 2 cut(s) 211, 999
BssECI CCNNGG 1 cut(s) 1165
BssMI GATC 5 cut(s) 262, 721, 755, 922, 1087
BssT1I CCWWGG 1 cut(s) 1165
Bst4CI ACNGT 4 cut(s) 293, 866, 943, 954
BstC8I GCNNGC 1 cut(s) 936
BstDEI CTNAG 3 cut(s) 456, 581, 1116
BstDSI CCRYGG 1 cut(s) 1165
BstF5I GGATG 2 cut(s) 405, 574
BstKTI GATC 5 cut(s) 265, 724, 758, 925, 1090
BstMBI GATC 5 cut(s) 262, 721, 755, 922, 1087
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstSFI CTRYAG 2 cut(s) 48, 224
BstV1I GCAGC 3 cut(s) 238, 995, 998
BstV2I GAAGAC 2 cut(s) 26, 267
Bsu15I ATCGAT 1 cut(s) 591
BsuRI GGCC 1 cut(s) 1035
BsuTUI ATCGAT 1 cut(s) 591
BtgI CCRYGG 1 cut(s) 1165
BtgZI GCGATG 1 cut(s) 127
BtsCI GGATG 2 cut(s) 405, 574
BtsI GCAGTG 1 cut(s) 1018
BtsIMutI CAGTG 3 cut(s) 218, 892, 1018
BveI ACCTGC 1 cut(s) 1039
Cac8I GCNNGC 1 cut(s) 936
CaiI CAGNNNCTG 1 cut(s) 989
Cfr13I GGNCC 1 cut(s) 311
ClaI ATCGAT 1 cut(s) 591
Csp6I GTAC 3 cut(s) 287, 654, 695
CviAII CATG 6 cut(s) 356, 734, 777, 1111, 1157, 1166
CviQI GTAC 3 cut(s) 287, 654, 695
DdeI CTNAG 3 cut(s) 456, 581, 1116
DpnI GATC 5 cut(s) 264, 723, 757, 924, 1089
DpnII GATC 5 cut(s) 262, 721, 755, 922, 1087
DraI TTTAAA 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 1165
Eco147I AGGCCT 1 cut(s) 1035
Eco47I GGWCC 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 1165
ErhI CCWWGG 1 cut(s) 1165
FaeI CATG 6 cut(s) 359, 737, 780, 1114, 1160, 1169
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 2 cut(s) 366, 599
FatI CATG 6 cut(s) 355, 733, 776, 1110, 1156, 1165
FauI CCCGC 1 cut(s) 680
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 3 cut(s) 227, 984, 987
FokI GGATG 2 cut(s) 392, 561
Fsp4HI GCNGC 3 cut(s) 227, 984, 987
FspBI CTAG 1 cut(s) 638
GluI GCNGC 3 cut(s) 227, 984, 987
GsaI CCCAGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 1 cut(s) 1035
Hin1II CATG 6 cut(s) 359, 737, 780, 1114, 1160, 1169
HinfI GANTC 3 cut(s) 300, 432, 498
HphI GGTGA 2 cut(s) 16, 563
Hpy166II GTNNAC 2 cut(s) 289, 695
Hpy188I TCNGA 2 cut(s) 315, 1117
Hpy188III TCNNGA 2 cut(s) 661, 703
Hpy8I GTNNAC 2 cut(s) 289, 695
HpyAV CCTTC 2 cut(s) 638, 1025
HpyCH4III ACNGT 4 cut(s) 293, 866, 943, 954
HpyCH4IV ACGT 1 cut(s) 743
HpyCH4V TGCA 4 cut(s) 173, 226, 518, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 3 cut(s) 456, 581, 1116
HpySE526I ACGT 1 cut(s) 743
Hsp92II CATG 6 cut(s) 359, 737, 780, 1114, 1160, 1169
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 5 cut(s) 262, 721, 755, 922, 1087
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 7 cut(s) 224, 280, 423, 487, 534, 980, 1034
Lsp1109I GCAGC 3 cut(s) 238, 995, 998
MaeI CTAG 1 cut(s) 638
MaeII ACGT 1 cut(s) 743
MalI GATC 5 cut(s) 264, 723, 757, 924, 1089
MboI GATC 5 cut(s) 262, 721, 755, 922, 1087
MluCI AATT 9 cut(s) 149, 366, 395, 602, 610, 631, 1081, 1097, 1144
MlyI GAGTC 1 cut(s) 507
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 4 cut(s) 277, 784, 883, 895
MseI TTAA 7 cut(s) 96, 132, 398, 605, 798, 834, 1073
MspA1I CMGCKG 2 cut(s) 687, 989
MwoI GCNNNNNNNGC 1 cut(s) 226
NcoI CCATGG 1 cut(s) 1165
NdeII GATC 5 cut(s) 262, 721, 755, 922, 1087
NlaIII CATG 6 cut(s) 359, 737, 780, 1114, 1160, 1169
NlaIV GGNNCC 1 cut(s) 1162
PceI AGGCCT 1 cut(s) 1035
PfeI GAWTC 2 cut(s) 300, 432
PkrI GCNGC 3 cut(s) 228, 985, 988
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
Psp1406I AACGTT 1 cut(s) 743
PspFI CCCAGC 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 1162
PspPI GGNCC 1 cut(s) 311
PstI CTGCAG 1 cut(s) 228
PstNI CAGNNNCTG 1 cut(s) 989
PvuII CAGCTG 1 cut(s) 989
RsaI GTAC 3 cut(s) 288, 655, 696
RsaNI GTAC 3 cut(s) 287, 654, 695
SaqAI TTAA 7 cut(s) 96, 132, 398, 605, 798, 834, 1073
SatI GCNGC 3 cut(s) 227, 984, 987
Sau3AI GATC 5 cut(s) 262, 721, 755, 922, 1087
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 1 cut(s) 507
SfcI CTRYAG 2 cut(s) 48, 224
SinI GGWCC 1 cut(s) 311
Sse9I AATT 9 cut(s) 149, 366, 395, 602, 610, 631, 1081, 1097, 1144
SseBI AGGCCT 1 cut(s) 1035
SsiI CCGC 1 cut(s) 687
SspMI CTAG 1 cut(s) 638
StuI AGGCCT 1 cut(s) 1035
StyI CCWWGG 1 cut(s) 1165
TaaI ACNGT 4 cut(s) 293, 866, 943, 954
TaiI ACGT 1 cut(s) 746
TaqI TCGA 2 cut(s) 430, 591
TaqII GACCGA 1 cut(s) 332
TasI AATT 9 cut(s) 149, 366, 395, 602, 610, 631, 1081, 1097, 1144
TatI WGTACW 1 cut(s) 694
TfiI GAWTC 2 cut(s) 300, 432
Tru1I TTAA 7 cut(s) 96, 132, 398, 605, 798, 834, 1073
Tru9I TTAA 7 cut(s) 96, 132, 398, 605, 798, 834, 1073
TscAI CASTG 3 cut(s) 218, 892, 1018
TseI GCWGC 3 cut(s) 226, 983, 986
TspDTI ATGAA 3 cut(s) 615, 722, 909
TspRI CASTG 3 cut(s) 218, 892, 1018
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 3 cut(s) 149, 366, 1144
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.