RLG00000017440

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000268
Physical Location & Seq
Forward (+)
16777642 .. 16779978
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017440

Sequence Viewer

Length: 1623 bp
ATGTATGCTTTGAAAAATGATGTAGAATCTTTGAAGAATGCTGTTTGTAATATTGACAAATCAGTTGACGAGCTGAAAGGTGTTGTTGGTACCATTCTTCCAAATGTTGTGGGAGAGCTGAAAGGTGTTTTTGGTAGTAATACGATGACAAACGCTTTGGGGGATTTGAAAGAGGAATTTTTCAAAGTGATAAATGAACTGAAAGAGCATGAAGTGGGAGAGATGTTTGCTTTAAAAAATGATATAGAATCTTTGAAGAATGCTATTTGTAATATTGACAAATCAGTTAATGAGCTGAAAGGTGTTGTTGGTACCATTCTTCCAAATGTTGTGGGAGAGCTGAAAGGTGTTTTTGGTAGTAATACGATGACAAACGCTTTGGAGGACCTGAAAGAGGAATTTTTCAAAGCGATAAATGAACTGAAAGAGCCATATGTCAAGGAAGATCTAGTTGCTTCTTCATGTCAGATATTAAGCGAAGATGACGTTGAGCGACCAAATATCGAGGTCAAGGTTAGGGAACCTAGCACCAAAAAAACAATTATAAAGAAGGAGGCCTCATCGAATGATATTAGTCCAAAGAATCTTCGACGCACTGTTGAAAGAAAGCCTGGCCATCAAATCTCAAGTCCATTTGTGCATTTAGGGAAGTTGGAAGTGATGGGGAATAAAATAGATCTTTTAACTACAAAACTTATAGAGGATAAGCCAAGAAAGCTGCAAGATATTGGTCCTTTCACAGGGTGTCGTGATCTTTATGATGACGACGTATATTTGATTGCGTTTGTATTTCTGGAATCAGAAGATCTAGAAATTTTTCAAACTGATTATGAACATCTTGACCGTTCGGCAATGAAATGCCTAGAGCCAGGGGGACTTGTTACCTCCAAGAGTAGAGCAATTACGGCAGCCAAGAAAGGAGGTAATGATTTGTTACAATTTGCTGCCACGGCACCAAAGAGATTTGGCTCTATATTACAATATCGAAAAGGCCTTAAGAATGGAGAAAAGATATTTATCCCCATCCTGGATCCAGATACTACCCCAAACCACTGGTTCTTCATTGTGATTAAATTAGCGAGAACGGATGTAGAGATATGGGACACTTACCCGAACCCTGCACGCACTATGGCTCGAAATGATCTTGTTTATTATGTGCTTTTGGCATTGGACACAATATTTGACACTGAAATCCAAAGCTGTTTCAAGAAAGGATGGTCGTTATGTTCATTCACAGTTTTCAATGTAGATGACATTCACATTCAACAAAACAACTTCGATTGTGGCATTTTCATGCTCAGATACATAATAAACTATGATAATCCATTGAAAGATGAGTTAGATTCCGTAAATCGTCGTGTGCAACTTGCCCTTTGGATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGACGAAGCTACTGGAAATAGTGTTGATCAACATCATGGCAAGAGCTGTTCACAAGTCATGCAGAGAAAAACCTCAACACTACAAGCAAGGGGTCGTGGTCGCCCTCGTGGTGCAAAGAATAAAAACTCTCGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

541

Amino Acids

60.97

Weight (kDa)

6.38

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 333 - 436 6.8e-10 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
Acc65I GGTACC 2 cut(s) 89, 311
AccB1I GGYRCC 4 cut(s) 89, 311, 952, 1451
AclWI GGATC 2 cut(s) 1025, 1038
AcoI YGGCCR 1 cut(s) 613
AcsI RAATTY 3 cut(s) 176, 398, 813
AdeI CACNNNGTG 1 cut(s) 744
AfaI GTAC 2 cut(s) 91, 313
AfiI CCNNNNNNNGG 4 cut(s) 394, 740, 1027, 1405
AflII CTTAAG 1 cut(s) 995
AjnI CCWGG 3 cut(s) 610, 868, 1026
AluBI AGCT 8 cut(s) 73, 118, 295, 340, 718, 1200, 1493, 1530
AluI AGCT 8 cut(s) 73, 118, 295, 340, 718, 1200, 1493, 1530
AlwI GGATC 2 cut(s) 1025, 1038
AoxI GGCC 3 cut(s) 555, 613, 991
ApeKI GCWGC 3 cut(s) 718, 908, 944
ApoI RAATTY 3 cut(s) 176, 398, 813
ArsI GACNNNNNNTTYG 8 cut(s) 139, 171, 361, 393, 613, 645, 1163, 1195
AseI ATTAAT 1 cut(s) 1416
Asp700I GAANNNNTTC 1 cut(s) 816
Asp718I GGTACC 2 cut(s) 89, 311
AspS9I GGNCC 2 cut(s) 385, 731
AsuHPI GGTGA 1 cut(s) 1420
AvaII GGWCC 2 cut(s) 385, 731
BalI TGGCCA 1 cut(s) 615
BamHI GGATCC 1 cut(s) 1030
BanI GGYRCC 4 cut(s) 89, 311, 952, 1451
BauI CACGAG 1 cut(s) 1590
BbvI GCAGC 3 cut(s) 705, 920, 931
BccI CCATC 5 cut(s) 624, 655, 1031, 1209, 1442
BceAI ACGGC 2 cut(s) 921, 966
BciT130I CCWGG 3 cut(s) 612, 870, 1028
BclI TGATCA 1 cut(s) 1510
BfaI CTAG 4 cut(s) 449, 525, 809, 863
BfrI CTTAAG 1 cut(s) 995
BglII AGATCT 3 cut(s) 445, 676, 805
BisI GCNGC 3 cut(s) 719, 909, 945
BlsI GCNGC 3 cut(s) 720, 910, 946
Bme1390I CCNGG 3 cut(s) 612, 870, 1028
Bme18I GGWCC 2 cut(s) 385, 731
BmgT120I GGNCC 2 cut(s) 385, 731
BmiI GGNNCC 6 cut(s) 91, 313, 522, 954, 1032, 1453
BmrFI CCNGG 3 cut(s) 612, 870, 1028
BpuEI CTTGAG 1 cut(s) 610
BsaBI GATNNNNATC 2 cut(s) 1016, 1515
BsaJI CCNNGG 2 cut(s) 869, 948
Bsc4I CCNNNNNNNGG 4 cut(s) 394, 740, 1027, 1405
Bse1I ACTGG 2 cut(s) 1058, 1501
Bse3DI GCAATG 1 cut(s) 858
Bse8I GATNNNNATC 2 cut(s) 1016, 1515
BseBI CCWGG 3 cut(s) 612, 870, 1028
BseDI CCNNGG 2 cut(s) 869, 948
BseGI GGATG 4 cut(s) 1023, 1093, 1220, 1383
BseJI GATNNNNATC 2 cut(s) 1016, 1515
BseLI CCNNNNNNNGG 4 cut(s) 394, 740, 1027, 1405
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 1 cut(s) 1312
BseNI ACTGG 2 cut(s) 1058, 1501
BseXI GCAGC 3 cut(s) 705, 920, 931
BsgI GTGCAG 1 cut(s) 1104
BshFI GGCC 3 cut(s) 557, 615, 993
BshNI GGYRCC 4 cut(s) 89, 311, 952, 1451
BslFI GGGAC 2 cut(s) 888, 1115
BslI CCNNNNNNNGG 4 cut(s) 394, 740, 1027, 1405
BsmFI GGGAC 2 cut(s) 888, 1115
BsmI GAATGC 2 cut(s) 43, 265
BsnI GGCC 3 cut(s) 557, 615, 993
Bsp143I GATC 8 cut(s) 445, 676, 751, 805, 1030, 1141, 1464, 1510
BspANI GGCC 3 cut(s) 557, 615, 993
BspCNI CTCAG 1 cut(s) 1311
BspLI GGNNCC 6 cut(s) 91, 313, 522, 954, 1032, 1453
BspPI GGATC 2 cut(s) 1025, 1038
BspT107I GGYRCC 4 cut(s) 89, 311, 952, 1451
BspTI CTTAAG 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 858
BsrI ACTGG 2 cut(s) 1058, 1501
BssECI CCNNGG 2 cut(s) 869, 948
BssMI GATC 8 cut(s) 445, 676, 751, 805, 1030, 1141, 1464, 1510
BssSI CACGAG 1 cut(s) 1590
Bst2BI CACGAG 1 cut(s) 1590
Bst2UI CCWGG 3 cut(s) 612, 870, 1028
Bst4CI ACNGT 3 cut(s) 598, 845, 1237
BstAFI CTTAAG 1 cut(s) 995
BstC8I GCNNGC 1 cut(s) 1123
BstDEI CTNAG 1 cut(s) 1298
BstDSI CCRYGG 1 cut(s) 948
BstENI CCTNNNNNAGG 2 cut(s) 392, 738
BstF5I GGATG 4 cut(s) 1023, 1093, 1220, 1383
BstKTI GATC 8 cut(s) 448, 679, 754, 808, 1033, 1144, 1467, 1513
BstMBI GATC 8 cut(s) 445, 676, 751, 805, 1030, 1141, 1464, 1510
BstMWI GCNNNNNNNGC 3 cut(s) 715, 905, 950
BstNI CCWGG 3 cut(s) 612, 870, 1028
BstSCI CCNGG 3 cut(s) 610, 868, 1026
BstV1I GCAGC 3 cut(s) 705, 920, 931
BstX2I RGATCY 4 cut(s) 445, 676, 805, 1030
BstXI CCANNNNNNTGG 1 cut(s) 1053
BstYI RGATCY 4 cut(s) 445, 676, 805, 1030
BsuRI GGCC 3 cut(s) 557, 615, 993
BtgI CCRYGG 1 cut(s) 948
BtsCI GGATG 4 cut(s) 1023, 1093, 1220, 1383
BtsIMutI CAGTG 3 cut(s) 594, 1051, 1185
Cac8I GCNNGC 1 cut(s) 1123
Cfr13I GGNCC 2 cut(s) 385, 731
CseI GACGC 1 cut(s) 600
Csp6I GTAC 2 cut(s) 90, 312
CspCI CAANNNNNGTGG 4 cut(s) 90, 125, 312, 347
CviAII CATG 6 cut(s) 209, 462, 1294, 1404, 1520, 1543
CviQI GTAC 2 cut(s) 90, 312
DdeI CTNAG 1 cut(s) 1298
DpnI GATC 8 cut(s) 447, 678, 753, 807, 1032, 1143, 1466, 1512
DpnII GATC 8 cut(s) 445, 676, 751, 805, 1030, 1141, 1464, 1510
DraI TTTAAA 1 cut(s) 234
DraIII CACNNNGTG 1 cut(s) 744
EaeI YGGCCR 1 cut(s) 613
Eco147I AGGCCT 2 cut(s) 557, 993
Eco47I GGWCC 2 cut(s) 385, 731
EcoNI CCTNNNNNAGG 2 cut(s) 392, 738
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 610, 868, 1026
FaeI CATG 6 cut(s) 212, 465, 1297, 1407, 1523, 1546
FaqI GGGAC 2 cut(s) 888, 1115
FatI CATG 6 cut(s) 208, 461, 1293, 1403, 1519, 1542
FauNDI CATATG 1 cut(s) 433
FbaI TGATCA 1 cut(s) 1510
Fnu4HI GCNGC 3 cut(s) 719, 909, 945
FokI GGATG 4 cut(s) 1010, 1100, 1227, 1390
Fsp4HI GCNGC 3 cut(s) 719, 909, 945
FspBI CTAG 4 cut(s) 449, 525, 809, 863
GluI GCNGC 3 cut(s) 719, 909, 945
HaeIII GGCC 3 cut(s) 557, 615, 993
HgaI GACGC 1 cut(s) 600
Hin1II CATG 6 cut(s) 212, 465, 1297, 1407, 1523, 1546
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 5 cut(s) 26, 248, 583, 797, 1343
HphI GGTGA 1 cut(s) 1420
Hpy166II GTNNAC 2 cut(s) 67, 1535
Hpy188I TCNGA 4 cut(s) 468, 802, 1301, 1617
Hpy188III TCNNGA 7 cut(s) 749, 794, 809, 839, 1034, 1207, 1468
Hpy8I GTNNAC 2 cut(s) 67, 1535
Hpy99I CGWCG 3 cut(s) 594, 770, 1359
HpyAV CCTTC 1 cut(s) 544
HpyCH4III ACNGT 3 cut(s) 598, 845, 1237
HpyCH4IV ACGT 2 cut(s) 486, 768
HpyCH4V TGCA 6 cut(s) 640, 721, 1121, 1363, 1546, 1598
HpyF10VI GCNNNNNNNGC 3 cut(s) 715, 905, 950
HpyF3I CTNAG 1 cut(s) 1298
HpySE526I ACGT 2 cut(s) 486, 768
Hsp92II CATG 6 cut(s) 212, 465, 1297, 1407, 1523, 1546
KpnI GGTACC 2 cut(s) 93, 315
Ksp22I TGATCA 1 cut(s) 1510
Kzo9I GATC 8 cut(s) 445, 676, 751, 805, 1030, 1141, 1464, 1510
Lsp1109I GCAGC 3 cut(s) 705, 920, 931
MaeI CTAG 4 cut(s) 449, 525, 809, 863
MaeII ACGT 2 cut(s) 486, 768
MaeIII GTNAC 2 cut(s) 880, 933
MalI GATC 8 cut(s) 447, 678, 753, 807, 1032, 1143, 1466, 1512
MboI GATC 8 cut(s) 445, 676, 751, 805, 1030, 1141, 1464, 1510
MflI RGATCY 4 cut(s) 445, 676, 805, 1030
MlsI TGGCCA 1 cut(s) 615
MluCI AATT 9 cut(s) 176, 398, 540, 813, 900, 938, 1073, 1413, 1482
MluNI TGGCCA 1 cut(s) 615
MmeI TCCRAC 1 cut(s) 633
Mox20I TGGCCA 1 cut(s) 615
MroXI GAANNNNTTC 1 cut(s) 816
MscI TGGCCA 1 cut(s) 615
MseI TTAA 7 cut(s) 233, 288, 473, 683, 996, 1071, 1416
MslI CAYNNNNRTG 1 cut(s) 1292
Msp20I TGGCCA 1 cut(s) 615
MspCI CTTAAG 1 cut(s) 995
MspR9I CCNGG 3 cut(s) 612, 870, 1028
Mva1269I GAATGC 2 cut(s) 43, 265
MvaI CCWGG 3 cut(s) 612, 870, 1028
MwoI GCNNNNNNNGC 3 cut(s) 715, 905, 950
NdeI CATATG 1 cut(s) 433
NdeII GATC 8 cut(s) 445, 676, 751, 805, 1030, 1141, 1464, 1510
NlaIII CATG 6 cut(s) 212, 465, 1297, 1407, 1523, 1546
NlaIV GGNNCC 6 cut(s) 91, 313, 522, 954, 1032, 1453
PceI AGGCCT 2 cut(s) 557, 993
PctI GAATGC 2 cut(s) 43, 265
PdmI GAANNNNTTC 1 cut(s) 816
PfeI GAWTC 5 cut(s) 26, 248, 583, 797, 1343
PfoI TCCNGGA 1 cut(s) 1026
PkrI GCNGC 3 cut(s) 720, 910, 946
PpuMI RGGWCCY 1 cut(s) 385
PshBI ATTAAT 1 cut(s) 1416
PsiI TTATAA 1 cut(s) 545
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 3 cut(s) 610, 868, 1026
PspGI CCWGG 3 cut(s) 610, 868, 1026
PspN4I GGNNCC 6 cut(s) 91, 313, 522, 954, 1032, 1453
PspPI GGNCC 2 cut(s) 385, 731
PspPPI RGGWCCY 1 cut(s) 385
PsuI RGATCY 4 cut(s) 445, 676, 805, 1030
RsaI GTAC 2 cut(s) 91, 313
RsaNI GTAC 2 cut(s) 90, 312
RseI CAYNNNNRTG 1 cut(s) 1292
SaqAI TTAA 7 cut(s) 233, 288, 473, 683, 996, 1071, 1416
SatI GCNGC 3 cut(s) 719, 909, 945
Sau3AI GATC 8 cut(s) 445, 676, 751, 805, 1030, 1141, 1464, 1510
Sau96I GGNCC 2 cut(s) 385, 731
ScrFI CCNGG 3 cut(s) 612, 870, 1028
SinI GGWCC 2 cut(s) 385, 731
SmiMI CAYNNNNRTG 1 cut(s) 1292
SmlI CTYRAG 2 cut(s) 625, 995
SmoI CTYRAG 2 cut(s) 625, 995
Sse9I AATT 9 cut(s) 176, 398, 540, 813, 900, 938, 1073, 1413, 1482
SseBI AGGCCT 2 cut(s) 557, 993
SspI AATATT 3 cut(s) 52, 274, 1179
SspMI CTAG 4 cut(s) 449, 525, 809, 863
StuI AGGCCT 2 cut(s) 557, 993
StyD4I CCNGG 3 cut(s) 610, 868, 1026
TaaI ACNGT 3 cut(s) 598, 845, 1237
TaiI ACGT 2 cut(s) 489, 771
TaqI TCGA 6 cut(s) 504, 563, 589, 985, 1135, 1278
TasI AATT 9 cut(s) 176, 398, 540, 813, 900, 938, 1073, 1413, 1482
TfiI GAWTC 5 cut(s) 26, 248, 583, 797, 1343
Tru1I TTAA 7 cut(s) 233, 288, 473, 683, 996, 1071, 1416
Tru9I TTAA 7 cut(s) 233, 288, 473, 683, 996, 1071, 1416
TscAI CASTG 3 cut(s) 601, 1058, 1192
TseI GCWGC 3 cut(s) 718, 908, 944
TspGWI ACGGA 2 cut(s) 1100, 1336
TspRI CASTG 3 cut(s) 601, 1058, 1192
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 2 cut(s) 385, 731
VspI ATTAAT 1 cut(s) 1416
XagI CCTNNNNNAGG 2 cut(s) 392, 738
XapI RAATTY 3 cut(s) 176, 398, 813
XbaI TCTAGA 1 cut(s) 808
XmnI GAANNNNTTC 1 cut(s) 816
XspI CTAG 4 cut(s) 449, 525, 809, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.