Prupe.6G153700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000268
Physical Location & Seq
Forward (+)
13381303 .. 13383098
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G153700.1

Sequence Viewer

Length: 930 bp
ATGAAGTGCGGAAAACTATCTCATTCAATGTGTCGTTTTTTGGTTGATAAACTGAATCCTTGTAAATCATCAATCGTGCTACATGAGAAAACACTTAAGATATCTGTGGATGACTTCGTGCGCATAATGGGTGTTAAGGATGGAGGAGAGGAAGTTGACTTCACTGGATCCATGCATGAGCAACACATTGTAAAGAAGCTTTTAAAGAGTAATGAGTTGAAGCAGATGATGGTGGGGACAGAAGAAGCAGGTGACTTTTTCAAAGTTGGTTTTGCCATGTTTGCTCTATGCACGTTGCTATGTCCAACCACTTCTGTGTATGTGAATCTAAAATATCTGCTTCTGTTAAGAGATAGCAAGGCAATAGCAAGGAAAAATTTAGCAAGTTATTCATTCAAATTTTTATTAGATAGTTTTAGGTCATTTAAGGAGAACAATCAAGTTTACATTGGTGGTTGCATGTTATTCCTTCAATTGTTTTACCTTGATGCTATAGCTCATGGTAGCGTACTTATGGATAGGCCTGTTCTACCATTCGCTGCTAGGCCAGAGAAACAAGATAGAACTCCCAACGACCAAGGTGACAATGTGAAAGGATTTGCAAATCTTGATAAAACTTTGGCTCCCTCTGTTGAAGTCATCCGTGAGAGAAAGCATGCAAAACGACTTCATAATGAGATTATGAAGAGATTGAATGTCGGTCCATTCCGGATGACCAACGATATTTCTGAAGATGATAGAGATCTACTAAGTTTTGCATTTTGTTGCAATCCATTGGATCCAAAAGCTTGGAGGTATACCCTAAACCAAATTTGTGAAAATAATTGTTATATGTGTTGTCATAATGATGAACATGACAAGTCTAGTAATCACCTTAGTTCCACTAGCCCAACGATCACCTCAATTCCACCAACCCGAAGACGACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

310

Amino Acids

35.3

Weight (kDa)

8.84

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 239
Acc16I TGCGCA 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 797
AccIII TCCGGA 1 cut(s) 708
AciI CCGC 1 cut(s) 9
AclWI GGATC 4 cut(s) 162, 175, 773, 786
AcsI RAATTY 3 cut(s) 376, 398, 810
AcuI CTGAAG 1 cut(s) 750
AfaI GTAC 1 cut(s) 510
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 7 cut(s) 27, 220, 262, 397, 473, 635, 694
AleI CACNNNNGTG 1 cut(s) 314
AluBI AGCT 3 cut(s) 199, 497, 788
AluI AGCT 3 cut(s) 199, 497, 788
AlwI GGATC 4 cut(s) 162, 175, 773, 786
Aor13HI TCCGGA 1 cut(s) 708
AoxI GGCC 2 cut(s) 521, 545
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 3 cut(s) 376, 398, 810
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 701
AsuHPI GGTGA 4 cut(s) 263, 593, 863, 889
AvaII GGWCC 1 cut(s) 701
BamHI GGATCC 2 cut(s) 167, 778
BbsI GAAGAC 1 cut(s) 925
BbvI GCAGC 1 cut(s) 526
BccI CCATC 2 cut(s) 134, 223
BfaI CTAG 3 cut(s) 543, 864, 885
BfmI CTRYAG 1 cut(s) 492
BfrI CTTAAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 239
BglII AGATCT 1 cut(s) 742
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
Bme18I GGWCC 1 cut(s) 701
BmgT120I GGNCC 1 cut(s) 701
BmiI GGNNCC 3 cut(s) 169, 624, 780
BmsI GCATC 1 cut(s) 478
BpiI GAAGAC 1 cut(s) 925
BsaBI GATNNNNATC 1 cut(s) 741
BsaJI CCNNGG 1 cut(s) 577
BsaWI WCCGGW 1 cut(s) 708
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 607, 637
Bse1I ACTGG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 741
BseAI TCCGGA 1 cut(s) 708
BseDI CCNNGG 1 cut(s) 577
BseGI GGATG 4 cut(s) 115, 145, 639, 717
BseJI GATNNNNATC 1 cut(s) 741
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 526
BshFI GGCC 2 cut(s) 523, 547
BsiSI CCGG 1 cut(s) 709
BslFI GGGAC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 2 cut(s) 523, 547
Bsp13I TCCGGA 1 cut(s) 708
Bsp143I GATC 4 cut(s) 167, 742, 778, 894
BspACI CCGC 1 cut(s) 9
BspANI GGCC 2 cut(s) 523, 547
BspEI TCCGGA 1 cut(s) 708
BspLI GGNNCC 3 cut(s) 169, 624, 780
BspMI ACCTGC 1 cut(s) 239
BspPI GGATC 4 cut(s) 162, 175, 773, 786
BspTI CTTAAG 1 cut(s) 95
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 577
BssMI GATC 4 cut(s) 167, 742, 778, 894
BssNAI GTATAC 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 577
Bst1107I GTATAC 1 cut(s) 798
Bst6I CTCTTC 1 cut(s) 680
BstAFI CTTAAG 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 657
BstDEI CTNAG 2 cut(s) 749, 875
BstF5I GGATG 4 cut(s) 115, 145, 639, 717
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 4 cut(s) 170, 745, 781, 897
BstMBI GATC 4 cut(s) 167, 742, 778, 894
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNSI RCATGY 2 cut(s) 463, 659
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 925
BstX2I RGATCY 3 cut(s) 167, 742, 778
BstXI CCANNNNNNTGG 1 cut(s) 789
BstYI RGATCY 3 cut(s) 167, 742, 778
BstZ17I GTATAC 1 cut(s) 798
BsuRI GGCC 2 cut(s) 523, 547
BtsCI GGATG 4 cut(s) 115, 145, 639, 717
BtsIMutI CAGTG 1 cut(s) 162
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 657
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 701
Csp6I GTAC 1 cut(s) 509
CviAII CATG 8 cut(s) 83, 172, 176, 277, 460, 500, 656, 854
CviJI RGCY 7 cut(s) 199, 497, 523, 547, 623, 788, 888
CviKI_1 RGCY 7 cut(s) 199, 497, 523, 547, 623, 788, 888
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 2 cut(s) 749, 875
DpnI GATC 4 cut(s) 169, 744, 780, 896
DpnII GATC 4 cut(s) 167, 742, 778, 894
DraI TTTAAA 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 680
EarI CTCTTC 1 cut(s) 680
Eco130I CCWWGG 1 cut(s) 577
Eco147I AGGCCT 1 cut(s) 523
Eco32I GATATC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 750
EcoRV GATATC 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 577
EcoT22I ATGCAT 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 8 cut(s) 86, 175, 179, 280, 463, 503, 659, 857
FaqI GGGAC 1 cut(s) 250
FatI CATG 8 cut(s) 82, 171, 175, 276, 459, 499, 655, 853
FblI GTMKAC 1 cut(s) 797
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 4 cut(s) 122, 152, 626, 724
Fsp4HI GCNGC 1 cut(s) 540
FspAI RTGCGCAY 1 cut(s) 122
FspBI CTAG 3 cut(s) 543, 864, 885
FspI TGCGCA 1 cut(s) 122
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 540
HaeIII GGCC 2 cut(s) 523, 547
HapII CCGG 1 cut(s) 709
HhaI GCGC 1 cut(s) 123
Hin1II CATG 8 cut(s) 86, 175, 179, 280, 463, 503, 659, 857
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 2 cut(s) 197, 786
HinfI GANTC 2 cut(s) 55, 325
HpaII CCGG 1 cut(s) 709
HphI GGTGA 4 cut(s) 263, 593, 863, 889
Hpy166II GTNNAC 3 cut(s) 157, 445, 798
Hpy188I TCNGA 1 cut(s) 730
Hpy188III TCNNGA 2 cut(s) 608, 709
Hpy8I GTNNAC 3 cut(s) 157, 445, 798
Hpy99I CGWCG 1 cut(s) 927
HpyAV CCTTC 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 7 cut(s) 175, 291, 459, 602, 659, 758, 768
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 749, 875
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 8 cut(s) 86, 175, 179, 280, 463, 503, 659, 857
HspAI GCGC 1 cut(s) 121
Kpn2I TCCGGA 1 cut(s) 708
Kzo9I GATC 4 cut(s) 167, 742, 778, 894
LmnI GCTCC 1 cut(s) 628
LpnPI CCDG 5 cut(s) 150, 234, 537, 561, 722
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 1 cut(s) 478
MaeI CTAG 3 cut(s) 543, 864, 885
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 251, 581
MalI GATC 4 cut(s) 169, 744, 780, 896
MboI GATC 4 cut(s) 167, 742, 778, 894
MboII GAAGA 4 cut(s) 254, 697, 743, 930
MfeI CAATTG 1 cut(s) 473
MflI RGATCY 3 cut(s) 167, 742, 778
MluCI AATT 6 cut(s) 376, 398, 473, 810, 823, 903
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 5 cut(s) 137, 142, 637, 786, 910
Mph1103I ATGCAT 1 cut(s) 177
MroI TCCGGA 1 cut(s) 708
MseI TTAA 5 cut(s) 96, 135, 203, 347, 426
MslI CAYNNNNRTG 2 cut(s) 314, 846
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 1 cut(s) 709
MunI CAATTG 1 cut(s) 473
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 4 cut(s) 167, 742, 778, 894
NlaIII CATG 8 cut(s) 86, 175, 179, 280, 463, 503, 659, 857
NlaIV GGNNCC 3 cut(s) 169, 624, 780
NmuCI GTSAC 2 cut(s) 251, 581
NsbI TGCGCA 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 2 cut(s) 463, 659
OliI CACNNNNGTG 1 cut(s) 314
PaeI GCATGC 1 cut(s) 659
PaqCI CACCTGC 1 cut(s) 239
PceI AGGCCT 1 cut(s) 523
PfeI GAWTC 2 cut(s) 55, 325
PkrI GCNGC 1 cut(s) 541
PspN4I GGNNCC 3 cut(s) 169, 624, 780
PspPI GGNCC 1 cut(s) 701
PsuI RGATCY 3 cut(s) 167, 742, 778
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 2 cut(s) 314, 846
SaqAI TTAA 5 cut(s) 96, 135, 203, 347, 426
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 4 cut(s) 167, 742, 778, 894
Sau96I GGNCC 1 cut(s) 701
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 701
SmiMI CAYNNNNRTG 2 cut(s) 314, 846
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SphI GCATGC 1 cut(s) 659
Sse9I AATT 6 cut(s) 376, 398, 473, 810, 823, 903
SseBI AGGCCT 1 cut(s) 523
SsiI CCGC 1 cut(s) 9
SspMI CTAG 3 cut(s) 543, 864, 885
StuI AGGCCT 1 cut(s) 523
StyI CCWWGG 1 cut(s) 577
TaiI ACGT 1 cut(s) 296
TaqII GACCGA 1 cut(s) 689
TasI AATT 6 cut(s) 376, 398, 473, 810, 823, 903
TfiI GAWTC 2 cut(s) 55, 325
Tru1I TTAA 5 cut(s) 96, 135, 203, 347, 426
Tru9I TTAA 5 cut(s) 96, 135, 203, 347, 426
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 2 cut(s) 251, 581
TseI GCWGC 1 cut(s) 539
Tsp45I GTSAC 2 cut(s) 251, 581
TspDTI ATGAA 5 cut(s) 17, 381, 659, 698, 864
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 1 cut(s) 169
Vha464I CTTAAG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 701
XapI RAATTY 3 cut(s) 376, 398, 810
XceI RCATGY 2 cut(s) 463, 659
XmiI GTMKAC 1 cut(s) 797
XspI CTAG 3 cut(s) 543, 864, 885
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.