Prupe.7G070100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000268
Physical Location & Seq
Forward (+)
10793040 .. 10796528
3489 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G070100.2

Sequence Viewer

Length: 1230 bp
ATGGTGAAAAAGAACAACGATGTGCATAGTAAGGGCAAAAATCCAAAAACAACAAAAGACGAGTCCAAGATGGTGATTCCTCGGAAGACGGGTTATTTTAACTTTCTGAAAATAAAGGGCCATGAAATGAAGAAACAAAAAATAGTGGACAAAGTGGATACGAAGACAAAGAAAGAAATTGCTAATATGTGGCAAAAGTTGGATGCCACTCAAAAAGCAGAGTATGATTCTAAAACACCTTCAACGAACGCCTCGAACAAGGGTTGTTTGAAGATAAGCACACGATGCAGTCCGAAGGATATCAAGGACACTATAAATGTTTTAAGCGATGAGAAAAAAGCAGCCATTGAAGAAATGGGATTTGTTTCGTTGTTGGAAATGAAGTGCGGAAAATTGTCTCATTCATTGTGTCATTTTTTAGTTGATAAATTGGATCCTGCTGAATCATCAATTGTGCTACATGGAAAAACATTTAAGATATCTGTGGATGACTTCGTGCGCATAATGGGTGTTAAGGATGGAGGAGAGGAAGTTCACTTCACCGGATCCATGGATGACCAAGACATTGTAAATATGCGAAATTCTTTTTTGGGCGGGAAGAAGCTTTTAAAAAATAATGAGTTGAAGCAGATAATGGTGGGGACAGAAGAAGCAAGTGACTTTTTCAAAGTTGGTTTTGTCATGTTTGCTCTATGCACATTGCTATGCCCAACCACTTCCGTGTATGTGAATCTAAAATATCTGCTTCCGTTAAGAGATAGCAAGGCAATAGCAAGGAAAAATTGGGCGAGTTATTCTTTGAGATTTTTATTAGACAGTGTCAGGTCATTTAAGGAGAACAATCAAGTTTACATCGGTGGTTGCTTGTTATTCCTTCAATTATTTTACCTTGATGCTATAGCTCATGGTAGCGTACTTGTGGATAGGTCTGTGCTACCACTTACTGTGTGGGGGAAAGTAGAGACCGAAAAAATGAAGAAGTGGCTACAAAAAAAAGGGGGGTTTGAAAGTGATAAGGTAGTTGTTATGAAAACTGAATATGGAGGCCTCGGAGATGATGCCAAAACAATGACTCACTTTGCTGAAGAGTTAAGTTCAATAAAAAAGGATGTGGCAACTTTGGTGGCCACTGTTGCTCGTATGGACAAATCCCTCTCCAAGATTATGTCTGAGTTATCATCAAGAAATGAAGAGAAAGAAAGAACATTGCGCACTCCATGCCCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

410

Amino Acids

46.08

Weight (kDa)

9.27

Isoelectric Point (pI)

24.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 500, 1211
AciI CCGC 2 cut(s) 387, 594
AclWI GGATC 4 cut(s) 428, 441, 540, 553
AcoI YGGCCR 1 cut(s) 1125
AcsI RAATTY 1 cut(s) 580
AcuI CTGAAG 1 cut(s) 1104
AfaI GTAC 1 cut(s) 915
AgsI TTSAA 8 cut(s) 243, 271, 350, 625, 667, 878, 1007, 1098
AleI CACNNNNGTG 1 cut(s) 719
AloI GAACNNNNNNTCC 2 cut(s) 516, 548
AluBI AGCT 2 cut(s) 604, 902
AluI AGCT 2 cut(s) 604, 902
Alw26I GTCTC 2 cut(s) 402, 956
AlwI GGATC 4 cut(s) 428, 441, 540, 553
AoxI GGCC 3 cut(s) 118, 1045, 1125
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 580
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AspLEI GCGC 2 cut(s) 501, 1212
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 3 cut(s) 16, 85, 532
BalI TGGCCA 1 cut(s) 1127
BamHI GGATCC 2 cut(s) 433, 545
BbsI GAAGAC 2 cut(s) 92, 170
BbvI GCAGC 1 cut(s) 353
BccI CCATC 2 cut(s) 64, 512
BciVI GTATCC 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 402, 956
BfmI CTRYAG 1 cut(s) 897
BfuI GTATCC 1 cut(s) 151
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 435, 547
BmsI GCATC 4 cut(s) 193, 275, 883, 1048
BpiI GAAGAC 2 cut(s) 92, 170
BsaI GGTCTC 1 cut(s) 956
BsaJI CCNNGG 3 cut(s) 80, 549, 1048
BsaWI WCCGGW 1 cut(s) 542
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bse3DI GCAATG 2 cut(s) 698, 1205
BseDI CCNNGG 3 cut(s) 80, 549, 1048
BseGI GGATG 5 cut(s) 208, 493, 523, 559, 1114
BseMI GCAATG 2 cut(s) 698, 1205
BseMII CTCAG 1 cut(s) 1161
BseRI GAGGAG 1 cut(s) 537
BseXI GCAGC 1 cut(s) 353
BshFI GGCC 3 cut(s) 120, 1047, 1127
BsiSI CCGG 1 cut(s) 543
BslFI GGGAC 1 cut(s) 655
BsmAI GTCTC 2 cut(s) 402, 956
BsmFI GGGAC 1 cut(s) 655
BsnI GGCC 3 cut(s) 120, 1047, 1127
Bso31I GGTCTC 1 cut(s) 956
Bsp143I GATC 2 cut(s) 433, 545
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 2 cut(s) 387, 594
BspANI GGCC 3 cut(s) 120, 1047, 1127
BspCNI CTCAG 1 cut(s) 1162
BspLI GGNNCC 2 cut(s) 435, 547
BspPI GGATC 4 cut(s) 428, 441, 540, 553
BspTNI GGTCTC 1 cut(s) 956
BsrDI GCAATG 2 cut(s) 698, 1205
BssECI CCNNGG 3 cut(s) 80, 549, 1048
BssMI GATC 2 cut(s) 433, 545
BssT1I CCWWGG 1 cut(s) 549
Bst4CI ACNGT 3 cut(s) 818, 946, 1132
Bst6I CTCTTC 2 cut(s) 1080, 1185
BstAPI GCANNNNNTGC 2 cut(s) 285, 1218
BstDEI CTNAG 1 cut(s) 1170
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 5 cut(s) 208, 493, 523, 559, 1114
BstHHI GCGC 2 cut(s) 501, 1212
BstKTI GATC 2 cut(s) 436, 548
BstMAI GTCTC 2 cut(s) 402, 956
BstMBI GATC 2 cut(s) 433, 545
BstMWI GCNNNNNNNGC 3 cut(s) 285, 1133, 1218
BstSFI CTRYAG 1 cut(s) 897
BstV1I GCAGC 1 cut(s) 353
BstV2I GAAGAC 2 cut(s) 92, 170
BstX2I RGATCY 2 cut(s) 433, 545
BstYI RGATCY 2 cut(s) 433, 545
BsuI GTATCC 1 cut(s) 151
BsuRI GGCC 3 cut(s) 120, 1047, 1127
BtgI CCRYGG 1 cut(s) 549
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 5 cut(s) 208, 493, 523, 559, 1114
BtsIMutI CAGTG 2 cut(s) 823, 1128
CfoI GCGC 2 cut(s) 501, 1212
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 914
CspCI CAANNNNNGTGG 2 cut(s) 1104, 1139
CviAII CATG 6 cut(s) 122, 461, 550, 682, 905, 1218
CviJI RGCY 7 cut(s) 120, 344, 604, 902, 985, 1047, 1127
CviKI_1 RGCY 7 cut(s) 120, 344, 604, 902, 985, 1047, 1127
CviQI GTAC 1 cut(s) 914
DdeI CTNAG 1 cut(s) 1170
DpnI GATC 2 cut(s) 435, 547
DpnII GATC 2 cut(s) 433, 545
DraI TTTAAA 1 cut(s) 609
EaeI YGGCCR 1 cut(s) 1125
Eam1104I CTCTTC 2 cut(s) 1080, 1185
EarI CTCTTC 2 cut(s) 1080, 1185
Eco130I CCWWGG 1 cut(s) 549
Eco147I AGGCCT 1 cut(s) 1047
Eco31I GGTCTC 1 cut(s) 956
Eco32I GATATC 2 cut(s) 301, 480
Eco57I CTGAAG 1 cut(s) 1104
EcoRV GATATC 2 cut(s) 301, 480
EcoT14I CCWWGG 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 6 cut(s) 125, 464, 553, 685, 908, 1221
FaqI GGGAC 1 cut(s) 655
FatI CATG 6 cut(s) 121, 460, 549, 681, 904, 1217
FauI CCCGC 1 cut(s) 587
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 5 cut(s) 215, 500, 530, 566, 1121
Fsp4HI GCNGC 1 cut(s) 342
FspAI RTGCGCAY 1 cut(s) 500
FspI TGCGCA 2 cut(s) 500, 1211
GlaI GCGC 2 cut(s) 500, 1211
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 3 cut(s) 120, 1047, 1127
HapII CCGG 1 cut(s) 543
HhaI GCGC 2 cut(s) 501, 1212
Hin1II CATG 6 cut(s) 125, 464, 553, 685, 908, 1221
Hin6I GCGC 2 cut(s) 499, 1210
HinP1I GCGC 2 cut(s) 499, 1210
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 6 cut(s) 62, 76, 227, 443, 730, 1072
HpaII CCGG 1 cut(s) 543
HphI GGTGA 3 cut(s) 16, 85, 532
Hpy166II GTNNAC 3 cut(s) 148, 535, 850
Hpy188I TCNGA 5 cut(s) 84, 108, 294, 1052, 1171
Hpy188III TCNNGA 1 cut(s) 1182
Hpy8I GTNNAC 3 cut(s) 148, 535, 850
HpyAV CCTTC 3 cut(s) 249, 289, 884
HpyCH4III ACNGT 3 cut(s) 818, 946, 1132
HpyCH4V TGCA 3 cut(s) 25, 288, 696
HpyF10VI GCNNNNNNNGC 3 cut(s) 285, 1133, 1218
HpyF3I CTNAG 1 cut(s) 1170
Hsp92II CATG 6 cut(s) 125, 464, 553, 685, 908, 1221
HspAI GCGC 2 cut(s) 499, 1210
Kzo9I GATC 2 cut(s) 433, 545
LpnPI CCDG 3 cut(s) 450, 556, 808
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 4 cut(s) 193, 275, 883, 1048
MaeIII GTNAC 1 cut(s) 656
MalI GATC 2 cut(s) 435, 547
MboI GATC 2 cut(s) 433, 545
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 2 cut(s) 433, 545
MlsI TGGCCA 1 cut(s) 1127
MluCI AATT 7 cut(s) 177, 392, 428, 450, 580, 781, 878
MluNI TGGCCA 1 cut(s) 1127
MlyI GAGTC 2 cut(s) 71, 1066
MmeI TCCRAC 2 cut(s) 180, 354
MnlI CCTC 7 cut(s) 90, 262, 515, 520, 1037, 1058, 1163
Mox20I TGGCCA 1 cut(s) 1127
MscI TGGCCA 1 cut(s) 1127
MseI TTAA 9 cut(s) 99, 323, 474, 513, 608, 752, 831, 1091, 1228
MslI CAYNNNNRTG 2 cut(s) 703, 719
Msp20I TGGCCA 1 cut(s) 1127
MspI CCGG 1 cut(s) 543
MunI CAATTG 1 cut(s) 450
MwoI GCNNNNNNNGC 3 cut(s) 285, 1133, 1218
NcoI CCATGG 1 cut(s) 549
NdeII GATC 2 cut(s) 433, 545
NlaIII CATG 6 cut(s) 125, 464, 553, 685, 908, 1221
NlaIV GGNNCC 2 cut(s) 435, 547
NmuCI GTSAC 1 cut(s) 656
NsbI TGCGCA 2 cut(s) 500, 1211
OliI CACNNNNGTG 1 cut(s) 719
PceI AGGCCT 1 cut(s) 1047
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PfeI GAWTC 4 cut(s) 76, 227, 443, 730
PflFI GACNNNGTC 1 cut(s) 818
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 2 cut(s) 70, 1066
PpsI GAGTC 2 cut(s) 70, 1066
PspN4I GGNNCC 2 cut(s) 435, 547
PspPI GGNCC 1 cut(s) 118
PsuI RGATCY 2 cut(s) 433, 545
PsyI GACNNNGTC 1 cut(s) 818
RsaI GTAC 1 cut(s) 915
RsaNI GTAC 1 cut(s) 914
RseI CAYNNNNRTG 2 cut(s) 703, 719
SaqAI TTAA 9 cut(s) 99, 323, 474, 513, 608, 752, 831, 1091, 1228
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 433, 545
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 2 cut(s) 71, 1066
SetI ASST 7 cut(s) 241, 606, 827, 891, 904, 929, 1020
SfaNI GCATC 4 cut(s) 193, 275, 883, 1048
SfcI CTRYAG 1 cut(s) 897
SmiMI CAYNNNNRTG 2 cut(s) 703, 719
Sse9I AATT 7 cut(s) 177, 392, 428, 450, 580, 781, 878
SseBI AGGCCT 1 cut(s) 1047
SsiI CCGC 2 cut(s) 387, 594
StuI AGGCCT 1 cut(s) 1047
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 3 cut(s) 818, 946, 1132
TaqI TCGA 1 cut(s) 254
TaqII GACCGA 1 cut(s) 980
TasI AATT 7 cut(s) 177, 392, 428, 450, 580, 781, 878
TfiI GAWTC 4 cut(s) 76, 227, 443, 730
Tru1I TTAA 9 cut(s) 99, 323, 474, 513, 608, 752, 831, 1091, 1228
Tru9I TTAA 9 cut(s) 99, 323, 474, 513, 608, 752, 831, 1091, 1228
TscAI CASTG 2 cut(s) 823, 1135
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 7 cut(s) 138, 143, 393, 395, 989, 1043, 1203
TspGWI ACGGA 2 cut(s) 709, 738
TspRI CASTG 2 cut(s) 823, 1135
Tth111I GACNNNGTC 1 cut(s) 818
XapI RAATTY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 2 cut(s) 352, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.