Prupe.2G063700_v2.0.a1

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000268
Physical Location & Seq
Reverse (-)
8547981 .. 8548699
719 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G063700.1

Sequence Viewer

Length: 540 bp
ATGTCATTGTGCTCCTATATTTTCATTCCCGTTTTGGATCGAATTGGGAGTCATTGGTATTTGCTAGTGGTGCTTATGGGTGATAAAAAGGTTGAACTATGGGATAGTCTCCCCGCTGCTAAATACAACGCATCTCGTTATCAATTAGTGGAACGAATTATGAAAGTGTTGGACTACATTTATAAAGATGAGATTGTCAAACATTTTGACAAAGGATGGCAGTTTGCAAATTTCAACATTGTGCGAACTGACAAGGCCCGCAGACAACTAAATGGATGCGATTGTGGTATCTTCGTCATGAATTGGCTAGAAGATATTGAATGCACATCACACGGTTCCAATAAATTTCAACATGCAAGCGAGCGGGTTCGCGTTGCACTATCGTTGCTGAAGAACCCAAAAAACAAGCGTCTAAAAGAAGTAAGGGAGTCCGCTCGAAGAGTTGTCGACGAGGAACTTGACATGTTGGCCCAACATGGTCCATCCATCCCTCATCATCCCATCGCAAGGAAGCCAATGACACGCTCCCAGGCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

180

Amino Acids

20.9

Weight (kDa)

9.39

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AccBSI CCGCTC 2 cut(s) 364, 434
AccI GTMKAC 1 cut(s) 447
AccII CGCG 1 cut(s) 372
AciI CCGC 4 cut(s) 114, 259, 364, 432
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 2 cut(s) 229, 344
AcuI CTGAAG 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 507
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 4 cut(s) 95, 235, 320, 350
AjnI CCWGG 1 cut(s) 528
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 45
AoxI GGCC 2 cut(s) 255, 468
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 229, 344
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AspS9I GGNCC 3 cut(s) 256, 469, 479
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 103
BccI CCATC 4 cut(s) 210, 490, 494, 509
BciT130I CCWGG 1 cut(s) 530
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 2 cut(s) 65, 308
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 530
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 3 cut(s) 256, 469, 479
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 530
BmsI GCATC 2 cut(s) 140, 266
BsaJI CCNNGG 1 cut(s) 528
Bsc4I CCNNNNNNNGG 1 cut(s) 507
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 5 cut(s) 221, 281, 482, 486, 496
BseLI CCNNNNNNNGG 1 cut(s) 507
BseXI GCAGC 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 2 cut(s) 257, 470
BsiHKAI GWGCWC 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 507
BsmAI GTCTC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 2 cut(s) 257, 470
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 4 cut(s) 114, 259, 364, 432
BspANI GGCC 2 cut(s) 257, 470
BspFNI CGCG 1 cut(s) 372
BspHI TCATGA 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 337
BspPI GGATC 1 cut(s) 45
BsrBI CCGCTC 2 cut(s) 364, 434
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 433
BstC8I GCNNGC 3 cut(s) 259, 358, 362
BstF5I GGATG 5 cut(s) 221, 281, 482, 486, 496
BstFNI CGCG 1 cut(s) 372
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 530
BstNSI RCATGY 2 cut(s) 356, 466
BstSCI CCNGG 1 cut(s) 528
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 103
BsuRI GGCC 2 cut(s) 257, 470
BtgZI GCGATG 1 cut(s) 487
BtsCI GGATG 5 cut(s) 221, 281, 482, 486, 496
Cac8I GCNNGC 3 cut(s) 259, 358, 362
CciI TCATGA 1 cut(s) 297
Cfr13I GGNCC 3 cut(s) 256, 469, 479
CseI GACGC 1 cut(s) 398
CviAII CATG 4 cut(s) 298, 353, 463, 476
CviJI RGCY 4 cut(s) 257, 307, 470, 514
CviKI_1 RGCY 4 cut(s) 257, 307, 470, 514
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 528
FaeI CATG 4 cut(s) 301, 356, 466, 479
FaiI YATR 9 cut(s) 18, 77, 100, 161, 183, 299, 354, 464, 477
FatI CATG 4 cut(s) 297, 352, 462, 475
FauI CCCGC 3 cut(s) 121, 266, 357
FblI GTMKAC 1 cut(s) 447
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 5 cut(s) 228, 288, 469, 473, 483
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 65, 308
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 257, 470
HgaI GACGC 1 cut(s) 398
Hin1II CATG 4 cut(s) 301, 356, 466, 479
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 2 cut(s) 49, 428
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 448
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 1 cut(s) 448
Hpy99I CGWCG 1 cut(s) 452
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4V TGCA 4 cut(s) 227, 324, 356, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
Hsp92II CATG 4 cut(s) 301, 356, 466, 479
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 2 cut(s) 17, 530
LpnPI CCDG 1 cut(s) 515
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 140, 266
MaeI CTAG 2 cut(s) 65, 308
MalI GATC 1 cut(s) 39
MbiI CCGCTC 2 cut(s) 364, 434
MboI GATC 1 cut(s) 37
MboII GAAGA 4 cut(s) 283, 323, 403, 450
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 6 cut(s) 42, 143, 156, 229, 301, 344
MlyI GAGTC 2 cut(s) 58, 437
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 2 cut(s) 445, 501
MspA1I CMGCKG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 530
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 530
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 1 cut(s) 37
NlaIII CATG 4 cut(s) 301, 356, 466, 479
NlaIV GGNNCC 1 cut(s) 337
NspI RCATGY 2 cut(s) 356, 466
PagI TCATGA 1 cut(s) 297
PciI ACATGT 1 cut(s) 462
PctI GAATGC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 2 cut(s) 57, 436
PpsI GAGTC 2 cut(s) 57, 436
PscI ACATGT 1 cut(s) 462
PsiI TTATAA 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 3 cut(s) 256, 469, 479
SalI GTCGAC 1 cut(s) 446
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 3 cut(s) 256, 469, 479
SchI GAGTC 2 cut(s) 58, 437
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 1 cut(s) 14
SetI ASST 1 cut(s) 93
SfaNI GCATC 2 cut(s) 140, 266
SinI GGWCC 1 cut(s) 479
Sse9I AATT 6 cut(s) 42, 143, 156, 229, 301, 344
SsiI CCGC 4 cut(s) 114, 259, 364, 432
SspMI CTAG 2 cut(s) 65, 308
StyD4I CCNGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 335
TaqI TCGA 3 cut(s) 40, 436, 447
TasI AATT 6 cut(s) 42, 143, 156, 229, 301, 344
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 13, 176, 314
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 2 cut(s) 229, 344
XceI RCATGY 2 cut(s) 356, 466
XmiI GTMKAC 1 cut(s) 447
XspI CTAG 2 cut(s) 65, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.