Rorug07G0305200

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000268
Physical Location & Seq
Forward (+)
30569626 .. 30571084
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0305200.1

Sequence Viewer

Length: 828 bp
ATGGCTACGGTCTTGCTGTCATCTTCAGCCTTCTTCTTCTTCTTCCTCACTACCATCTTTCTTTTCTCCATCTCACCATGGGAAGTTGAGGCTCATCCAGTATCTACTTTGATCAACAAAAAGCTTTACAACAACTTGTTTCTACACAAGGACGACACAGCATGCCCTGCAAATGATTTCTACACCTATCGCTCCTTCATCGAGGCAACCAAATACTTTCCGAGATTCGGCACCACCGGAAGTCTAGCCACTCGAAAGCGTGAAATTGCAGCATTTCTTGCTCAGATCTCTCACGAGACCACAGGCGGGTGGGCTACAGCGCCCGACGGACCATACTCTTGGGGTTTGTGCTTTAAAGAGGAAGTCAATCCGGGAAGCAACTATTGCGACAGCACCAACAAGGAGTGGCCATGCTATCCTGGAAAATCTTACAAAGGAAGAGGACCAATTCAACTATCTTGGAACTATAATTATGGTCAGGCAGGCAAGGCATTAAGGTTTGATGGACTAAAAAATCCAGAAGTAGTAGCAAACAGTTCCTTAATAGCTTTCAAAACAGCTATATGGTTCTGGATGACTGAGCAAAAGCCAAAGCCCTCTTGTCACGATGTCATGGTGGGTCGATATGTGCTCACGCAAGCTGACATGGCTGCTAATAGGACTGTCGGATTCGGGATGGTGACGAACATCATCAACGGTGGACTTGAGTGTGGAATAGGCAGCGATGCACGAGTGAATGATCGAATTGGTTATTTCAAAAGATATGCTAGTCTGTTTGGTGTTCAAACAGGACCAAATTTAGACTGTGAAAATCAAAAGTCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

275

Amino Acids

30.79

Weight (kDa)

8.59

Isoelectric Point (pI)

30.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 37 - 269 3.2e-106 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AciI CCGC 1 cut(s) 306
AcoI YGGCCR 1 cut(s) 407
AcsI RAATTY 1 cut(s) 796
AcuI CTGAAG 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 227, 306
AgsI TTSAA 4 cut(s) 452, 553, 757, 785
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 4 cut(s) 124, 548, 560, 641
AluI AGCT 4 cut(s) 124, 548, 560, 641
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 1 cut(s) 290
AoxI GGCC 1 cut(s) 407
ApeKI GCWGC 3 cut(s) 269, 650, 720
ApoI RAATTY 1 cut(s) 796
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 3 cut(s) 329, 443, 791
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 66, 691
AvaII GGWCC 3 cut(s) 329, 443, 791
BalI TGGCCA 1 cut(s) 409
BanI GGYRCC 1 cut(s) 230
BauI CACGAG 2 cut(s) 293, 729
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 3 cut(s) 281, 637, 732
BccI CCATC 4 cut(s) 62, 77, 497, 670
BciT130I CCWGG 1 cut(s) 420
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 2 cut(s) 245, 768
BfmI CTRYAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 323
BglII AGATCT 1 cut(s) 285
BisI GCNGC 3 cut(s) 270, 651, 721
BlsI GCNGC 3 cut(s) 271, 652, 722
Bme1390I CCNGG 2 cut(s) 372, 420
Bme18I GGWCC 3 cut(s) 329, 443, 791
BmgT120I GGNCC 3 cut(s) 329, 443, 791
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 372, 420
BmsI GCATC 1 cut(s) 715
BpuEI CTTGAG 1 cut(s) 725
BpuMI CCSGG 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 306
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 3 cut(s) 94, 579, 681
BseLI CCNNNNNNNGG 2 cut(s) 227, 306
BseMII CTCAG 2 cut(s) 296, 570
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 3 cut(s) 281, 637, 732
BshFI GGCC 1 cut(s) 409
BshNI GGYRCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 633
BsiSI CCGG 2 cut(s) 237, 371
BslI CCNNNNNNNGG 2 cut(s) 227, 306
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 1 cut(s) 409
Bso31I GGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 3 cut(s) 111, 285, 739
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 1 cut(s) 306
BspANI GGCC 1 cut(s) 409
BspCNI CTCAG 2 cut(s) 295, 571
BspLI GGNNCC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 290
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 3 cut(s) 111, 285, 739
BssSI CACGAG 2 cut(s) 293, 729
BssT1I CCWWGG 1 cut(s) 77
Bst2BI CACGAG 2 cut(s) 293, 729
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 5 cut(s) 10, 536, 664, 698, 806
Bst6I CTCTTC 1 cut(s) 433
BstAPI GCANNNNNTGC 3 cut(s) 167, 278, 384
BstC8I GCNNGC 3 cut(s) 163, 484, 639
BstDEI CTNAG 2 cut(s) 282, 579
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 3 cut(s) 94, 579, 681
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 3 cut(s) 114, 288, 742
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 3 cut(s) 111, 285, 739
BstMWI GCNNNNNNNGC 5 cut(s) 167, 278, 384, 488, 647
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 165
BstSCI CCNGG 2 cut(s) 370, 418
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 3 cut(s) 281, 637, 732
BstX2I RGATCY 1 cut(s) 285
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 1 cut(s) 409
BtgI CCRYGG 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 3 cut(s) 94, 579, 681
Cac8I GCNNGC 3 cut(s) 163, 484, 639
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 3 cut(s) 329, 443, 791
CviAII CATG 5 cut(s) 78, 162, 411, 613, 646
DdeI CTNAG 2 cut(s) 282, 579
DpnI GATC 3 cut(s) 113, 287, 741
DpnII GATC 3 cut(s) 111, 285, 739
DraI TTTAAA 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 290
Eco47I GGWCC 3 cut(s) 329, 443, 791
Eco57I CTGAAG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 5 cut(s) 81, 165, 414, 616, 649
FatI CATG 5 cut(s) 77, 161, 410, 612, 645
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 270, 651, 721
FokI GGATG 3 cut(s) 81, 586, 688
Fsp4HI GCNGC 3 cut(s) 270, 651, 721
FspBI CTAG 2 cut(s) 245, 768
GlaI GCGC 1 cut(s) 321
GluI GCNGC 3 cut(s) 270, 651, 721
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 1 cut(s) 409
HapII CCGG 2 cut(s) 237, 371
HhaI GCGC 1 cut(s) 322
Hin1II CATG 5 cut(s) 81, 165, 414, 616, 649
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 225, 669
HpaII CCGG 2 cut(s) 237, 371
HphI GGTGA 2 cut(s) 66, 691
Hpy166II GTNNAC 1 cut(s) 701
Hpy188I TCNGA 3 cut(s) 222, 285, 668
Hpy188III TCNNGA 5 cut(s) 293, 518, 571, 605, 673
Hpy8I GTNNAC 1 cut(s) 701
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 40, 205
HpyCH4III ACNGT 5 cut(s) 10, 536, 664, 698, 806
HpyCH4V TGCA 3 cut(s) 170, 269, 728
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 278, 384, 488, 647
HpyF3I CTNAG 2 cut(s) 282, 579
Hsp92II CATG 5 cut(s) 81, 165, 414, 616, 649
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 3 cut(s) 111, 285, 739
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 3 cut(s) 281, 637, 732
LweI GCATC 1 cut(s) 715
MaeI CTAG 2 cut(s) 245, 768
MaeIII GTNAC 2 cut(s) 602, 679
MalI GATC 3 cut(s) 113, 287, 741
MboI GATC 3 cut(s) 111, 285, 739
MboII GAAGA 6 cut(s) 15, 25, 28, 31, 34, 450
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 633
MlsI TGGCCA 1 cut(s) 409
MluCI AATT 5 cut(s) 264, 447, 469, 744, 796
MluNI TGGCCA 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 646
MnlI CCTC 6 cut(s) 56, 82, 196, 352, 434, 607
Mox20I TGGCCA 1 cut(s) 409
MscI TGGCCA 1 cut(s) 409
MseI TTAA 4 cut(s) 354, 494, 542, 826
Msp20I TGGCCA 1 cut(s) 409
MspI CCGG 2 cut(s) 237, 371
MspR9I CCNGG 2 cut(s) 372, 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 5 cut(s) 167, 278, 384, 488, 647
NciI CCSGG 1 cut(s) 372
NcoI CCATGG 1 cut(s) 77
NdeII GATC 3 cut(s) 111, 285, 739
NlaIII CATG 5 cut(s) 81, 165, 414, 616, 649
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 602, 679
NspI RCATGY 1 cut(s) 165
PaeI GCATGC 1 cut(s) 165
PfeI GAWTC 2 cut(s) 225, 669
PfoI TCCNGGA 2 cut(s) 370, 418
PkrI GCNGC 3 cut(s) 271, 652, 722
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 3 cut(s) 329, 443, 791
PsuI RGATCY 1 cut(s) 285
SaqAI TTAA 4 cut(s) 354, 494, 542, 826
SatI GCNGC 3 cut(s) 270, 651, 721
Sau3AI GATC 3 cut(s) 111, 285, 739
Sau96I GGNCC 3 cut(s) 329, 443, 791
ScrFI CCNGG 2 cut(s) 372, 420
SduI GDGCHC 1 cut(s) 633
SetI ASST 6 cut(s) 126, 188, 500, 550, 562, 643
SfaNI GCATC 1 cut(s) 715
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 3 cut(s) 329, 443, 791
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
SphI GCATGC 1 cut(s) 165
Sse9I AATT 5 cut(s) 264, 447, 469, 744, 796
SsiI CCGC 1 cut(s) 306
SspMI CTAG 2 cut(s) 245, 768
StyD4I CCNGG 2 cut(s) 370, 418
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 5 cut(s) 10, 536, 664, 698, 806
TaqI TCGA 4 cut(s) 201, 253, 622, 742
TasI AATT 5 cut(s) 264, 447, 469, 744, 796
TfiI GAWTC 2 cut(s) 225, 669
Tru1I TTAA 4 cut(s) 354, 494, 542, 826
Tru9I TTAA 4 cut(s) 354, 494, 542, 826
TseFI GTSAC 2 cut(s) 602, 679
TseI GCWGC 3 cut(s) 269, 650, 720
Tsp45I GTSAC 2 cut(s) 602, 679
TspDTI ATGAA 1 cut(s) 187
TspGWI ACGGA 1 cut(s) 342
VpaK11BI GGWCC 3 cut(s) 329, 443, 791
XapI RAATTY 1 cut(s) 796
XceI RCATGY 1 cut(s) 165
XspI CTAG 2 cut(s) 245, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.