Rroxscaffold_6G00390050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000268
Physical Location & Seq
Reverse (-)
4457005 .. 4458409
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390050.1

Sequence Viewer

Length: 519 bp
ATGCACGTGGAGGAAAAGATTGATGAACTGGGAGGTCGTCTTAGAGGGATAAAAGAAGAATTGTTCAAAGTAGTGAGACAAGATGGTGATCGAGATGTCGGTATAAAAAGGGACGAGGCTAATCATGAAAAGAAGATCGTGGAACTGTCATCAAATGACACTATTGGGCAAAACCATCGGGAAAATGATAACTTCCTAGACCATTTTGAAATAAAATGCTTAGAGCCTTGTCAATATGTCAGCAACAAGGCCAAAGCACTTTCTAAAAAAGAAGGTAAAGTTCTATCAACATTTGCTGCCAAAGCGAAAAAGGAAAACAAAGCCGAGTTCCGGTACTTTGTATTTGAGAAATGCGAAAAGATTTTTATTCCCATCCTAGATGACGGTGTAAAAGGGAACCACCGGTTCCCGATGGTAGTAAAAATAAGAACCAAGGAGGTTGAGATATGGGATAGTTTACCTAGTCGCACATGCAAGATTCCACGAGAGAATCTAGTTTATCATTTGGTAATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

20.03

Weight (kDa)

8.59

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 7
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 330
AgeI ACCGGT 1 cut(s) 402
AgsI TTSAA 2 cut(s) 67, 209
Alw26I GTCTC 1 cut(s) 70
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 296
AsiGI ACCGGT 1 cut(s) 402
AsuHPI GGTGA 1 cut(s) 98
BauI CACGAG 1 cut(s) 483
BbrPI CACGTG 1 cut(s) 7
BbvI GCAGC 1 cut(s) 283
BccI CCATC 4 cut(s) 77, 183, 380, 406
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 4 cut(s) 197, 377, 462, 494
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 398, 407
BmrI ACTGGG 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 7
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 432
BsaWI WCCGGW 2 cut(s) 330, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 33
Bse8I GATNNNNATC 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 1 cut(s) 372
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 251
BshTI ACCGGT 1 cut(s) 402
BsiSI CCGG 2 cut(s) 331, 403
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 251
Bsp143I GATC 2 cut(s) 88, 135
BspANI GGCC 1 cut(s) 251
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 398, 407
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 2 cut(s) 88, 135
BssSI CACGAG 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 147, 386
BstBAI YACGTR 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 41, 220
BstF5I GGATG 1 cut(s) 372
BstKTI GATC 2 cut(s) 91, 138
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 88, 135
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 474
BstV1I GCAGC 1 cut(s) 283
BsuRI GGCC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 372
CciI TCATGA 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 402
Csp6I GTAC 1 cut(s) 334
CspAI ACCGGT 1 cut(s) 402
CviAII CATG 2 cut(s) 125, 471
CviJI RGCY 4 cut(s) 119, 226, 251, 323
CviKI_1 RGCY 4 cut(s) 119, 226, 251, 323
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 2 cut(s) 41, 220
DpnI GATC 2 cut(s) 90, 137
DpnII GATC 2 cut(s) 88, 135
Eco130I CCWWGG 1 cut(s) 432
Eco72I CACGTG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 2 cut(s) 128, 474
FaiI YATR 5 cut(s) 104, 126, 237, 448, 472
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 124, 470
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 4 cut(s) 197, 377, 462, 494
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 251
HapII CCGG 2 cut(s) 331, 403
Hin1II CATG 2 cut(s) 128, 474
HinfI GANTC 2 cut(s) 478, 490
HpaII CCGG 2 cut(s) 331, 403
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 458
Hpy188III TCNNGA 4 cut(s) 92, 125, 179, 409
Hpy8I GTNNAC 1 cut(s) 458
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 147, 386
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 4, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 41, 220
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 2 cut(s) 128, 474
Kzo9I GATC 2 cut(s) 88, 135
LpnPI CCDG 3 cut(s) 14, 344, 416
Lsp1109I GCAGC 1 cut(s) 283
MaeI CTAG 4 cut(s) 197, 377, 462, 494
MaeII ACGT 1 cut(s) 6
MalI GATC 2 cut(s) 90, 137
MboI GATC 2 cut(s) 88, 135
MboII GAAGA 2 cut(s) 68, 145
MluCI AATT 2 cut(s) 59, 514
MnlI CCTC 5 cut(s) 4, 26, 38, 109, 430
MseI TTAA 1 cut(s) 517
MspI CCGG 2 cut(s) 331, 403
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 2 cut(s) 88, 135
NlaIII CATG 2 cut(s) 128, 474
NlaIV GGNNCC 2 cut(s) 398, 407
NmeAIII GCCGAG 1 cut(s) 349
NspI RCATGY 1 cut(s) 474
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 2 cut(s) 478, 490
PinAI ACCGGT 1 cut(s) 402
PkrI GCNGC 1 cut(s) 298
PmaCI CACGTG 1 cut(s) 7
PmlI CACGTG 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 7
PspCI CACGTG 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 398, 407
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 517
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 88, 135
SetI ASST 5 cut(s) 9, 37, 277, 441, 463
Sse9I AATT 2 cut(s) 59, 514
SspMI CTAG 4 cut(s) 197, 377, 462, 494
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 2 cut(s) 147, 386
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 91
TasI AATT 2 cut(s) 59, 514
TfiI GAWTC 2 cut(s) 478, 490
Tru1I TTAA 1 cut(s) 517
Tru9I TTAA 1 cut(s) 517
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 39, 141
XceI RCATGY 1 cut(s) 474
XspI CTAG 4 cut(s) 197, 377, 462, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.