Rroxscaffold_1G00032500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000268
Physical Location & Seq
Forward (+)
46502502 .. 46508157
5656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032500.1

Sequence Viewer

Length: 279 bp
ATGCCGGAATCGGGTCCGGGCTTCCCTTGCGGGTCTCGGACGACGCTAACGAACCTCAAGTCGATATTAGAAACATTAAGAAAGAGATTGCATCTCCGAACTCGGTCGGATCCCCTTTTGGAGTACCGTGATAAAATAGAACGTCTAACCGCACAACTTTTATATGAAAAGCCAAGAATAATACAAGATATTGGTCCTTTGAAAGGGTGTCGTGACCTTTCCAACGAAGAAGTAGATCTAATAGCTTTCATATATCTCAACGTCCGGAATGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.67

Weight (kDa)

7.78

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 264
AciI CCGC 2 cut(s) 30, 150
AclWI GGATC 2 cut(s) 104, 117
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 11, 203
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 104, 117
Aor13HI TCCGGA 1 cut(s) 264
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspS9I GGNCC 2 cut(s) 14, 194
AsuC2I CCSGG 1 cut(s) 18
AvaII GGWCC 2 cut(s) 14, 194
BamHI GGATCC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 39
BglII AGATCT 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 2 cut(s) 14, 194
BmgT120I GGNCC 2 cut(s) 14, 194
BmiI GGNNCC 2 cut(s) 15, 111
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 203
BseAI TCCGGA 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 11, 203
Bsh1285I CGRYCG 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 107
BsiSI CCGG 3 cut(s) 5, 17, 265
BslI CCNNNNNNNGG 2 cut(s) 11, 203
BsmAI GTCTC 1 cut(s) 39
Bso31I GGTCTC 1 cut(s) 39
Bsp13I TCCGGA 1 cut(s) 264
Bsp143I GATC 2 cut(s) 109, 235
BspACI CCGC 2 cut(s) 30, 150
BspEI TCCGGA 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 15, 111
BspPI GGATC 2 cut(s) 104, 117
BspTNI GGTCTC 1 cut(s) 39
BssMI GATC 2 cut(s) 109, 235
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 201
BstKTI GATC 2 cut(s) 112, 238
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 2 cut(s) 109, 235
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 16
BstX2I RGATCY 2 cut(s) 109, 235
BstYI RGATCY 2 cut(s) 109, 235
Cfr13I GGNCC 2 cut(s) 14, 194
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 3 cut(s) 21, 172, 245
CviKI_1 RGCY 3 cut(s) 21, 172, 245
CviQI GTAC 1 cut(s) 124
DpnI GATC 2 cut(s) 111, 237
DpnII GATC 2 cut(s) 109, 235
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 14, 194
EcoNI CCTNNNNNAGG 1 cut(s) 201
FaiI YATR 4 cut(s) 163, 165, 251, 253
FauI CCCGC 1 cut(s) 23
HapII CCGG 3 cut(s) 5, 17, 265
HgaI GACGC 1 cut(s) 52
HinfI GANTC 1 cut(s) 8
HpaII CCGG 3 cut(s) 5, 17, 265
Hpy188I TCNGA 3 cut(s) 39, 98, 109
Hpy188III TCNNGA 2 cut(s) 212, 265
Hpy99I CGWCG 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 2 cut(s) 142, 261
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpySE526I ACGT 2 cut(s) 142, 261
Kpn2I TCCGGA 1 cut(s) 264
Kzo9I GATC 2 cut(s) 109, 235
LpnPI CCDG 2 cut(s) 18, 30
LweI GCATC 1 cut(s) 100
MaeII ACGT 2 cut(s) 142, 261
MaeIII GTNAC 1 cut(s) 212
MalI GATC 2 cut(s) 111, 237
MboI GATC 2 cut(s) 109, 235
MboII GAAGA 1 cut(s) 239
MflI RGATCY 2 cut(s) 109, 235
MmeI TCCRAC 2 cut(s) 87, 246
MnlI CCTC 1 cut(s) 65
MroI TCCGGA 1 cut(s) 264
MseI TTAA 1 cut(s) 77
MspI CCGG 3 cut(s) 5, 17, 265
MspR9I CCNGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 27
NciI CCSGG 1 cut(s) 18
NdeII GATC 2 cut(s) 109, 235
NlaIV GGNNCC 2 cut(s) 15, 111
NmuCI GTSAC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 15, 111
PspPI GGNCC 2 cut(s) 14, 194
PsuI RGATCY 2 cut(s) 109, 235
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 77
Sau3AI GATC 2 cut(s) 109, 235
Sau96I GGNCC 2 cut(s) 14, 194
ScrFI CCNGG 1 cut(s) 18
SetI ASST 5 cut(s) 57, 145, 219, 247, 264
SfaNI GCATC 1 cut(s) 100
SinI GGWCC 2 cut(s) 14, 194
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SsiI CCGC 2 cut(s) 30, 150
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 2 cut(s) 145, 264
TaqI TCGA 1 cut(s) 62
TaqII GACCGA 1 cut(s) 93
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 180, 238
VpaK11BI GGWCC 2 cut(s) 14, 194
XagI CCTNNNNNAGG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.